Literature DB >> 21360187

Effect of metal Ions (Ni²⁺, Cu²⁺ and Zn²⁺) and water coordination on the structure of L-phenylalanine, L-tyrosine, L-tryptophan and their zwitterionic forms.

Milan Remko1, Daniel Fitz, Ria Broer, Bernd Michael Rode.   

Abstract

Methods of quantum chemistry have been applied to double-charged complexes involving the transition metals Ni(2+), Cu(2+) and Zn(2+) with the aromatic amino acids (AAA) phenylalanine, tyrosine and tryptophan. The effect of hydration on the relative stability and geometry of the individual species studied has been evaluated within the supermolecule approach. The interaction enthalpies, entropies and Gibbs energies of nine complexes Phe•M, Tyr•M, Trp•M, (M = Ni(2+), Cu(2+) and Zn(2+)) were determined at the Becke3LYP density functional level of theory. Of the transition metals studied the bivalent copper cation forms the strongest complexes with AAAs. For Ni(2+)and Cu(2+) the most stable species are the NO coordinated cations in the AAA metal complexes, Zn(2+)cation prefers a binding to the aromatic part of the AAA (complex II). Some complexes energetically unfavored in the gas-phase are stabilized upon microsolvation.

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Year:  2011        PMID: 21360187      PMCID: PMC3224218          DOI: 10.1007/s00894-011-1000-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  30 in total

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Authors:  F M Siu; N L Ma; C W Tsang
Journal:  J Am Chem Soc       Date:  2001-04-11       Impact factor: 15.419

Review 2.  Principles governing Mg, Ca, and Zn binding and selectivity in proteins.

Authors:  Todor Dudev; Carmay Lim
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3.  Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+ and Zn2+) and water coordination on the structure and properties of L-histidine and zwitterionic L-histidine.

Authors:  Milan Remko; Daniel Fitz; Bernd Michael Rode
Journal:  Amino Acids       Date:  2010-04-03       Impact factor: 3.520

Review 4.  Crystal structures of metal-peptide complexes.

Authors:  H C Freeman
Journal:  Adv Protein Chem       Date:  1967

5.  Cation-pi interactions in structural biology.

Authors:  J P Gallivan; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

6.  Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure of glycine and zwitterionic glycine.

Authors:  Milan Remko; Bernd Michael Rode
Journal:  J Phys Chem A       Date:  2006-02-09       Impact factor: 2.781

7.  Cation-pi interactions: structures and energetics of complexation of Na+ and K+ with the aromatic amino acids, phenylalanine, tyrosine, and tryptophan.

Authors:  Chunhai Ruan; M T Rodgers
Journal:  J Am Chem Soc       Date:  2004-11-10       Impact factor: 15.419

8.  Cation-pi Interactions and oxidative effects on Cu+ and Cu2+ binding to Phe, Tyr, Trp, and His amino acids in the gas phase. Insights from first-principles calculations.

Authors:  Albert Rimola; Luis Rodríguez-Santiago; Mariona Sodupe
Journal:  J Phys Chem B       Date:  2006-11-30       Impact factor: 2.991

9.  Lysine point mutations in Na+ channel D4-S6 reduce inactivated channel block by local anesthetics.

Authors:  S N Wright; S Y Wang; G K Wang
Journal:  Mol Pharmacol       Date:  1998-10       Impact factor: 4.436

10.  Structure of cationized arginine (arg.m, m = h, li, na, k, rb, and cs) in the gas phase: further evidence for zwitterionic arginine.

Authors:  R A Jockusch; W D Price; E R Williams
Journal:  J Phys Chem A       Date:  1999-11-18       Impact factor: 2.781

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  7 in total

1.  Affinity of Smectite and Divalent Metal Ions (Mg(2+), Ca(2+), Cu(2+)) with L-leucine: An Experimental and Theoretical Approach Relevant to Astrobiology.

Authors:  Pramod Pandey; Chandra Kala Pant; Kavita Gururani; Priyanka Arora; Neetu Pandey; Preeti Bhatt; Yogesh Sharma; Jagmohan Singh Negi; Mohan Singh Mehata
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2.  Effect of water coordination on competition between π and non-π cation binding sites in aromatic amino acids: L-phenylalanine, L-tyrosine, and L-tryptophan Li+, Na +, and K+ complexes.

Authors:  Milan Remko; Stanislava Šoralová
Journal:  J Biol Inorg Chem       Date:  2012-02-12       Impact factor: 3.358

3.  Interaction of Cysteine with Li+ and LiF in the Presence of (H2O) n (n = 0-6) Clusters.

Authors:  Liang Lu; Ren-Zhong Li; Xiao-Yang Xu
Journal:  ACS Omega       Date:  2022-05-27

4.  Zwitterionic conformers of pyrrolysine and their interactions with metal ions--a theoretical study.

Authors:  Gunajyoti Das
Journal:  J Mol Model       Date:  2013-04-07       Impact factor: 1.810

5.  An insight into the interaction of L-proline with the transition metal cations Fe(2+), Co(2+), Ni(2+): a gas phase theoretical study.

Authors:  Behzad Khalili
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

6.  Colorimetric detection of magnesium (II) ions using tryptophan functionalized gold nanoparticles.

Authors:  Dae-Young Kim; Surendra Shinde; Gajanan Ghodake
Journal:  Sci Rep       Date:  2017-06-21       Impact factor: 4.379

7.  A computational study of calcium(II) and copper(II) ion binding to the hyaluronate molecule.

Authors:  Elizabeta Tratar Pirc; Jernej Zidar; Peter Bukovec
Journal:  Int J Mol Sci       Date:  2012-09-20       Impact factor: 6.208

  7 in total

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