Literature DB >> 21339856

Translational systems biology of inflammation: potential applications to personalized medicine.

Qi Mi1, Nicole Yee-Key Li, Cordelia Ziraldo, Ali Ghuma, Maxim Mikheev, Robert Squires, David O Okonkwo, Katherine Verdolini-Abbott, Gregory Constantine, Gary An, Yoram Vodovotz.   

Abstract

A central goal of industrialized nations is to provide personalized, preemptive and predictive medicine, while maintaining healthcare costs at a minimum. To do so, we must confront and gain an understanding of inflammation, a complex, nonlinear process central to many diseases that affect both industrialized and developing nations. Herein, we describe the work aimed at creating a rational, engineering-oriented and evidence-based synthesis of inflammation geared towards rapid clinical application. This comprehensive approach, which we call 'Translational Systems Biology', to date has been utilized for in silico studies of sepsis, trauma/hemorrhage/traumatic brain injury, acute liver failure and wound healing. This framework has now allowed us to suggest how to modulate acute inflammation in a rational and individually optimized fashion using engineering principles applied to a biohybrid device. We suggest that we are on the cusp of fulfilling the promise of in silico modeling for personalized medicine for inflammatory disease.

Entities:  

Year:  2010        PMID: 21339856      PMCID: PMC3041597          DOI: 10.2217/pme.10.45

Source DB:  PubMed          Journal:  Per Med        ISSN: 1741-0541            Impact factor:   2.512


  85 in total

Review 1.  Anti-inflammatory cytokines.

Authors:  S M Opal; V A DePalo
Journal:  Chest       Date:  2000-04       Impact factor: 9.410

Review 2.  Posttraumatic inflammation is a complex response based on the pathological expression of the nervous, immune, and endocrine functional systems.

Authors:  M A Aller; J L Arias; M P Nava; J Arias
Journal:  Exp Biol Med (Maywood)       Date:  2004-02

3.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

4.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

5.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

Review 6.  Pharmacological approaches for the discovery and development of new anti-inflammatory agents for the treatment of cystic fibrosis.

Authors:  Michael W Konstan; Pamela B Davis
Journal:  Adv Drug Deliv Rev       Date:  2002-12-05       Impact factor: 15.470

Review 7.  Anti-inflammatory therapies in sepsis and septic shock.

Authors:  B D Freeman; C Natanson
Journal:  Expert Opin Investig Drugs       Date:  2000-07       Impact factor: 6.206

8.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

Review 9.  Hemorrhagic shock.

Authors:  A B Peitzman; T R Billiar; B G Harbrecht; E Kelly; A O Udekwu; R L Simmons
Journal:  Curr Probl Surg       Date:  1995-11       Impact factor: 1.909

10.  Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation.

Authors:  A G Wilson; J A Symons; T L McDowell; H O McDevitt; G W Duff
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-01       Impact factor: 11.205

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  26 in total

Review 1.  From data patterns to mechanistic models in acute critical illness.

Authors:  Jean-Marie Aerts; Wassim M Haddad; Gary An; Yoram Vodovotz
Journal:  J Crit Care       Date:  2014-03-29       Impact factor: 3.425

2.  A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.

Authors:  Gary Nieman; David Brown; Joydeep Sarkar; Brian Kubiak; Cordelia Ziraldo; Joyeeta Dutta-Moscato; Christopher Vieau; Derek Barclay; Louis Gatto; Kristopher Maier; Gregory Constantine; Timothy R Billiar; Ruben Zamora; Qi Mi; Steve Chang; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2012-04       Impact factor: 7.598

Review 3.  Systems biology: personalized medicine for the future?

Authors:  Rui Chen; Michael Snyder
Journal:  Curr Opin Pharmacol       Date:  2012-07-31       Impact factor: 5.547

4.  In Situ Visualization for 3D Agent-Based Vocal Fold Inflammation and Repair Simulation.

Authors:  Nuttiiya Seekhao; Joseph JaJa; Luc Mongeau; Nicole Y K Li-Jessen
Journal:  Supercomput Front Innov       Date:  2017 Jul-Sep

5.  Computational Modeling of Inflammation and Wound Healing.

Authors:  Cordelia Ziraldo; Qi Mi; Gary An; Yoram Vodovotz
Journal:  Adv Wound Care (New Rochelle)       Date:  2013-11       Impact factor: 4.730

Review 6.  Augmenting Surgery via Multi-scale Modeling and Translational Systems Biology in the Era of Precision Medicine: A Multidisciplinary Perspective.

Authors:  Ghassan S Kassab; Gary An; Edward A Sander; Michael I Miga; Julius M Guccione; Songbai Ji; Yoram Vodovotz
Journal:  Ann Biomed Eng       Date:  2016-03-25       Impact factor: 3.934

Review 7.  Sepsis: from pattern to mechanism and back.

Authors:  Gary An; Rami A Namas; Yoram Vodovotz
Journal:  Crit Rev Biomed Eng       Date:  2012

8.  In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.

Authors:  Gary An; John Bartels; Yoram Vodovotz
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

9.  Intravenous N-acetylcysteine in pediatric patients with nonacetaminophen acute liver failure: a placebo-controlled clinical trial.

Authors:  Robert H Squires; Anil Dhawan; Estella Alonso; Michael R Narkewicz; Benjamin L Shneider; Norberto Rodriguez-Baez; Dominic Dell Olio; Saul Karpen; John Bucuvalas; Steven Lobritto; Elizabeth Rand; Philip Rosenthal; Simon Horslen; Vicky Ng; Girish Subbarao; Nanda Kerkar; David Rudnick; M James Lopez; Kathleen Schwarz; Rene Romero; Scott Elisofon; Edward Doo; Patricia R Robuck; Sharon Lawlor; Steven H Belle
Journal:  Hepatology       Date:  2013-02-04       Impact factor: 17.425

Review 10.  In silico modeling: methods and applications to trauma and sepsis.

Authors:  Yoram Vodovotz; Timothy R Billiar
Journal:  Crit Care Med       Date:  2013-08       Impact factor: 7.598

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