Literature DB >> 21325130

RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria.

Teppei Morita1, Hiroji Aiba.   

Abstract

A major class of bacterial small RNAs (sRNAs), along with RNA-binding protein Hfq and endoribonuclease RNase E, acts on target mRNAs through base-pairing, leading to translational repression and rapid degradation of the mRNAs. In this issue of Genes & Development, Prévost and colleagues (pp. 385-396) demonstrate by using the well-characterized sRNA RyhB that RNase E cleavage at sites distal from the pairing region triggers degradation of target mRNAs. The study has provided an important insight into the initial events of sRNA-induced degradation of target mRNAs.

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Year:  2011        PMID: 21325130      PMCID: PMC3042153          DOI: 10.1101/gad.2030311

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  32 in total

1.  Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction.

Authors:  Thorleif Møller; Thomas Franch; Peter Højrup; Douglas R Keene; Hans Peter Bächinger; Richard G Brennan; Poul Valentin-Hansen
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

2.  A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli.

Authors:  Eric Massé; Susan Gottesman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

Review 3.  Controlling mRNA stability and translation with small, noncoding RNAs.

Authors:  Gisela Storz; Jason A Opdyke; Aixia Zhang
Journal:  Curr Opin Microbiol       Date:  2004-04       Impact factor: 7.934

Review 4.  The bacterial Sm-like protein Hfq: a key player in RNA transactions.

Authors:  Poul Valentin-Hansen; Maiken Eriksen; Christina Udesen
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

5.  The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein.

Authors:  A Zhang; S Altuvia; A Tiwari; L Argaman; R Hengge-Aronis; G Storz
Journal:  EMBO J       Date:  1998-10-15       Impact factor: 11.598

Review 6.  Gene regulation by proteins acting nearby and at a distance.

Authors:  M Ptashne
Journal:  Nature       Date:  1986 Aug 21-27       Impact factor: 49.962

7.  A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA).

Authors:  T Mizuno; M Y Chou; M Inouye
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

8.  Accumulation of glucose 6-phosphate or fructose 6-phosphate is responsible for destabilization of glucose transporter mRNA in Escherichia coli.

Authors:  Teppei Morita; Waleed El-Kazzaz; Yuya Tanaka; Toshifumi Inada; Hiroji Aiba
Journal:  J Biol Chem       Date:  2003-02-10       Impact factor: 5.157

9.  Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli.

Authors:  Eric Massé; Freddy E Escorcia; Susan Gottesman
Journal:  Genes Dev       Date:  2003-09-15       Impact factor: 12.890

Review 10.  The small RNA regulators of Escherichia coli: roles and mechanisms*.

Authors:  Susan Gottesman
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 16.232

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  25 in total

1.  Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition.

Authors:  Evelyn Sauer; Steffen Schmidt; Oliver Weichenrieder
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

2.  A small RNA activates CFA synthase by isoform-specific mRNA stabilization.

Authors:  Kathrin Sophie Fröhlich; Kai Papenfort; Agnes Fekete; Jörg Vogel
Journal:  EMBO J       Date:  2013-10-18       Impact factor: 11.598

3.  A small RNA serving both the Hfq and CsrA regulons.

Authors:  Erik Holmqvist; Jörg Vogel
Journal:  Genes Dev       Date:  2013-05-15       Impact factor: 11.361

4.  Two-level inhibition of galK expression by Spot 42: Degradation of mRNA mK2 and enhanced transcription termination before the galK gene.

Authors:  Xun Wang; Sang Chun Ji; Heung Jin Jeon; Yonho Lee; Heon M Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-04       Impact factor: 11.205

Review 5.  Structure and RNA-binding properties of the bacterial LSm protein Hfq.

Authors:  Evelyn Sauer
Journal:  RNA Biol       Date:  2013-03-27       Impact factor: 4.652

Review 6.  RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view.

Authors:  José I Jiménez-Zurdo; Marta Robledo
Journal:  RNA Biol       Date:  2017-09-13       Impact factor: 4.652

7.  Expression of each cistron in the gal operon can be regulated by transcription termination and generation of a galk-specific mRNA, mK2.

Authors:  Xun Wang; Sang Chun Ji; Sang Hoon Yun; Heung Jin Jeon; Si Wouk Kim; Heon M Lim
Journal:  J Bacteriol       Date:  2014-05-02       Impact factor: 3.490

8.  RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.

Authors:  Yulia Redko; Eloïse Galtier; Hélène Arnion; Fabien Darfeuille; Odile Sismeiro; Jean-Yves Coppée; Claudine Médigue; Marion Weiman; Stéphane Cruveiller; Hilde De Reuse
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

9.  Cooperation of Escherichia coli Hfq hexamers in DsrA binding.

Authors:  Weiwei Wang; Lijun Wang; Yang Zou; Jiahai Zhang; Qingguo Gong; Jihui Wu; Yunyu Shi
Journal:  Genes Dev       Date:  2011-10-01       Impact factor: 11.361

10.  Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella.

Authors:  Divya Balasubramanian; Carin K Vanderpool
Journal:  J Bacteriol       Date:  2013-08-09       Impact factor: 3.490

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