Literature DB >> 23699406

A small RNA serving both the Hfq and CsrA regulons.

Erik Holmqvist1, Jörg Vogel.   

Abstract

The abundant RNA-binding proteins CsrA and Hfq each impact bacterial physiology by working in conjunction with small RNAs to control large post-transcriptional regulons. The small RNAs involved were considered mechanistically distinct, regulating mRNAs either directly through Hfq-mediated base-pairing or indirectly by sequestering the global translational repressor CsrA. In this issue of Genes & Development, Jørgensen and colleagues (pp. 1132-1145) blur these distinctions with a dual-mechanism small RNA that acts through both Hfq and CsrA to regulate the formation of bacterial biofilms.

Keywords:  CsrA; CsrB; Hfq; PGA; c-di-GMP

Mesh:

Substances:

Year:  2013        PMID: 23699406      PMCID: PMC3672642          DOI: 10.1101/gad.220178.113

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  54 in total

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Authors:  Hans-Curt Flemming; Jost Wingender
Journal:  Nat Rev Microbiol       Date:  2010-08-02       Impact factor: 60.633

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Authors:  Erik Holmqvist; Johan Reimegård; Maaike Sterk; Nina Grantcharova; Ute Römling; Eduard Gerhart Heinrich Wagner
Journal:  EMBO J       Date:  2010-04-20       Impact factor: 11.598

Review 3.  Biofilms.

Authors:  Daniel López; Hera Vlamakis; Roberto Kolter
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-02       Impact factor: 10.005

4.  A conserved small RNA promotes silencing of the outer membrane protein YbfM.

Authors:  Anders Aamann Rasmussen; Jesper Johansen; Jesper S Nielsen; Martin Overgaard; Birgitte Kallipolitis; Poul Valentin-Hansen
Journal:  Mol Microbiol       Date:  2009-05       Impact factor: 3.501

5.  RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria.

Authors:  Teppei Morita; Hiroji Aiba
Journal:  Genes Dev       Date:  2011-02-15       Impact factor: 11.361

6.  Circuitry linking the Csr and stringent response global regulatory systems.

Authors:  Adrianne N Edwards; Laura M Patterson-Fortin; Christopher A Vakulskas; Jeffrey W Mercante; Katarzyna Potrykus; Daniel Vinella; Martha I Camacho; Joshua A Fields; Stuart A Thompson; Dimitris Georgellis; Michael Cashel; Paul Babitzke; Tony Romeo
Journal:  Mol Microbiol       Date:  2011-05-05       Impact factor: 3.501

Review 7.  Hfq and its constellation of RNA.

Authors:  Jörg Vogel; Ben F Luisi
Journal:  Nat Rev Microbiol       Date:  2011-08-15       Impact factor: 60.633

8.  Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors.

Authors:  Hiroshi Ogasawara; Kayoko Yamada; Ayako Kori; Kaneyoshi Yamamoto; Akira Ishihama
Journal:  Microbiology (Reading)       Date:  2010-05-13       Impact factor: 2.777

9.  Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium.

Authors:  Kristina Jonas; Adrianne N Edwards; Irfan Ahmad; Tony Romeo; Ute Römling; Ojar Melefors
Journal:  Environ Microbiol       Date:  2009-11-17       Impact factor: 5.491

10.  Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa.

Authors:  Elisabeth Sonnleitner; Laetitia Abdou; Dieter Haas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

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  10 in total

Review 1.  Post-transcriptional RNA regulons affecting cell cycle and proliferation.

Authors:  Jeff G Blackinton; Jack D Keene
Journal:  Semin Cell Dev Biol       Date:  2014-06-02       Impact factor: 7.727

2.  Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq.

Authors:  Kotaro Chihara; Lars Barquist; Kenichi Takasugi; Naohiro Noda; Satoshi Tsuneda
Journal:  RNA Biol       Date:  2021-04-27       Impact factor: 4.652

Review 3.  Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli.

Authors:  Franziska Mika; Regine Hengge
Journal:  RNA Biol       Date:  2014-04-25       Impact factor: 4.652

4.  Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors.

Authors:  Pritha Ghosh; Ramanathan Sowdhamini
Journal:  BMC Genomics       Date:  2017-08-24       Impact factor: 3.969

5.  A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.

Authors:  Sinan Ugur Umu; Paul P Gardner
Journal:  Bioinformatics       Date:  2017-04-01       Impact factor: 6.937

6.  The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition.

Authors:  Saskia Bauriedl; Milan Gerovac; Nadja Heidrich; Thorsten Bischler; Lars Barquist; Jörg Vogel; Christoph Schoen
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

Review 7.  Mechanisms of post-transcriptional gene regulation in bacterial biofilms.

Authors:  Luary C Martínez; Viveka Vadyvaloo
Journal:  Front Cell Infect Microbiol       Date:  2014-03-25       Impact factor: 5.293

8.  Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo.

Authors:  Erik Holmqvist; Patrick R Wright; Lei Li; Thorsten Bischler; Lars Barquist; Richard Reinhardt; Rolf Backofen; Jörg Vogel
Journal:  EMBO J       Date:  2016-04-04       Impact factor: 11.598

9.  An sRNA Screen for Reversal of Quinolone Resistance in Escherichia coli.

Authors:  Kamya Bhatnagar; Aaron Hinz; Melissa Kohlman; Alex Wong
Journal:  G3 (Bethesda)       Date:  2020-01-07       Impact factor: 3.154

Review 10.  The Multiple Regulatory Relationship Between RNA-Chaperone Hfq and the Second Messenger c-di-GMP.

Authors:  Yang Fu; Zhaoqing Yu; Li Zhu; Zhou Li; Wen Yin; Xiaodong Shang; Shan-Ho Chou; Qi Tan; Jin He
Journal:  Front Microbiol       Date:  2021-07-14       Impact factor: 5.640

  10 in total

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