Literature DB >> 28805544

RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view.

José I Jiménez-Zurdo1, Marta Robledo1.   

Abstract

Extensive work in model enterobacteria has evidenced that the RNA chaperone Hfq and several endoribonucleases, such as RNase E or RNase III, serve pivotal roles in small RNA-mediated post-transcriptional silencing of gene expression. Characterization of these protein hubs commonly provide global functional and mechanistic insights into complex sRNA regulatory networks. The legume endosymbiont Sinorhizobium meliloti is a non-classical model bacterium with a very complex lifestyle in which riboregulation is expected to play important adaptive functions. Here, we discuss current knowledge about RNA silencing in S. meliloti from the perspective of the activity of Hfq and a recently discovered endoribonuclease (YbeY) exhibiting unprecedented catalytic versatility for the cleavage of single- and double-stranded RNA molecules.

Entities:  

Keywords:  RNA-binding proteins; rhizobia; riboregulation; sRNA; α-proteobacteria

Mesh:

Substances:

Year:  2017        PMID: 28805544      PMCID: PMC5731808          DOI: 10.1080/15476286.2017.1356565

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  59 in total

1.  RNase E and RNase J are needed for S-adenosylmethionine homeostasis in Sinorhizobium meliloti.

Authors:  Kathrin Baumgardt; Hendrik Melior; Ramakanth Madhugiri; Sebastian Thalmann; Adam Schikora; Matthew McIntosh; Anke Becker; Elena Evguenieva-Hackenberg
Journal:  Microbiology (Reading)       Date:  2017-04-26       Impact factor: 2.777

2.  Disruption of sitA compromises Sinorhizobium meliloti for manganese uptake required for protection against oxidative stress.

Authors:  Bryan W Davies; Graham C Walker
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

Review 3.  Target activation by regulatory RNAs in bacteria.

Authors:  Kai Papenfort; Carin K Vanderpool
Journal:  FEMS Microbiol Rev       Date:  2015-04-30       Impact factor: 16.408

Review 4.  The critical role of RNA processing and degradation in the control of gene expression.

Authors:  Cecília M Arraiano; José M Andrade; Susana Domingues; Inês B Guinote; Michal Malecki; Rute G Matos; Ricardo N Moreira; Vânia Pobre; Filipa P Reis; Margarida Saramago; Inês J Silva; Sandra C Viegas
Journal:  FEMS Microbiol Rev       Date:  2010-06-24       Impact factor: 16.408

Review 5.  Manganese transport and the role of manganese in virulence.

Authors:  Krisztina M Papp-Wallace; Michael E Maguire
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

6.  Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing.

Authors:  Bryan W Davies; Caroline Köhrer; Asha I Jacob; Lyle A Simmons; Jianyu Zhu; Lourdes M Aleman; Uttam L Rajbhandary; Graham C Walker
Journal:  Mol Microbiol       Date:  2010-09-16       Impact factor: 3.501

7.  Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308.

Authors:  Clayton C Caswell; Jennifer M Gaines; Pawel Ciborowski; Derek Smith; Christoph H Borchers; Christelle M Roux; Khalid Sayood; Paul M Dunman; R Martin Roop Ii
Journal:  Mol Microbiol       Date:  2012-06-12       Impact factor: 3.501

8.  The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa.

Authors:  Lise Barra-Bily; Shree P Pandey; Annie Trautwetter; Carlos Blanco; Graham C Walker
Journal:  J Bacteriol       Date:  2010-01-15       Impact factor: 3.490

9.  A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.

Authors:  Jan-Philip Schlüter; Jan Reinkensmeier; Svenja Daschkey; Elena Evguenieva-Hackenberg; Stefan Janssen; Sebastian Jänicke; Jörg D Becker; Robert Giegerich; Anke Becker
Journal:  BMC Genomics       Date:  2010-04-17       Impact factor: 3.969

10.  Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA.

Authors:  Masatoshi Miyakoshi; Yanjie Chao; Jörg Vogel
Journal:  EMBO J       Date:  2015-01-28       Impact factor: 11.598

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  5 in total

1.  The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens.

Authors:  Philip Möller; Philip Busch; Beate Sauerbrei; Alexander Kraus; Konrad U Förstner; Tuan-Nan Wen; Aaron Overlöper; Erh-Min Lai; Franz Narberhaus
Journal:  J Bacteriol       Date:  2019-05-08       Impact factor: 3.490

2.  Endoribonuclease YbeY Is Linked to Proper Cellular Morphology and Virulence in Brucella abortus.

Authors:  James A Budnick; Lauren M Sheehan; Jennifer M Colquhoun; Paul M Dunman; Graham C Walker; R Martin Roop; Clayton C Caswell
Journal:  J Bacteriol       Date:  2018-05-24       Impact factor: 3.490

Review 3.  Riboregulation in Nitrogen-Fixing Endosymbiotic Bacteria.

Authors:  Marta Robledo; Natalia I García-Tomsig; José I Jiménez-Zurdo
Journal:  Microorganisms       Date:  2020-03-10

4.  Sinorhizobium meliloti YbeY is a zinc-dependent single-strand specific endoribonuclease that plays an important role in 16S ribosomal RNA processing.

Authors:  Vignesh M P Babu; Siva Sankari; James A Budnick; Clayton C Caswell; Graham C Walker
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

5.  Pervasive RNA Regulation of Metabolism Enhances the Root Colonization Ability of Nitrogen-Fixing Symbiotic α-Rhizobia.

Authors:  Natalia I García-Tomsig; Marta Robledo; George C diCenzo; Alessio Mengoni; Vicenta Millán; Alexandra Peregrina; Alejandro Uceta; José I Jiménez-Zurdo
Journal:  mBio       Date:  2022-02-15       Impact factor: 7.867

  5 in total

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