Literature DB >> 21324671

Cohesin: genomic insights into controlling gene transcription and development.

Dale Dorsett1.   

Abstract

Over the past decade it has emerged that the cohesin protein complex, which functions in sister chromatid cohesion, chromosome segregation, and DNA repair, also regulates gene expression and development. Even minor changes in cohesin activity alter several aspects of development. Genome-wide analysis indicates that cohesin directly regulates transcription of genes involved in cell proliferation, pluripotency, and differentiation through multiple mechanisms. These mechanisms are poorly understood, but involve both partial gene repression in concert with Polycomb group proteins, and facilitating long-range looping, both between enhancers and promoters, and between CTCF protein binding sites.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21324671      PMCID: PMC3070859          DOI: 10.1016/j.gde.2011.01.018

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  44 in total

Review 1.  Condensin and cohesin complexity: the expanding repertoire of functions.

Authors:  Andrew J Wood; Aaron F Severson; Barbara J Meyer
Journal:  Nat Rev Genet       Date:  2010-05-05       Impact factor: 53.242

2.  Buck the establishment: reinventing sister chromatid cohesion.

Authors:  Robert V Skibbens
Journal:  Trends Cell Biol       Date:  2010-09       Impact factor: 20.808

3.  Cell type specificity of chromatin organization mediated by CTCF and cohesin.

Authors:  Chunhui Hou; Ryan Dale; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

4.  Positive regulation of c-Myc by cohesin is direct, and evolutionarily conserved.

Authors:  Jenny M Rhodes; Fiona K Bentley; Cristin G Print; Dale Dorsett; Ziva Misulovin; Emma J Dickinson; Kathryn E Crosier; Philip S Crosier; Julia A Horsfield
Journal:  Dev Biol       Date:  2010-05-27       Impact factor: 3.582

5.  A CTCF-independent role for cohesin in tissue-specific transcription.

Authors:  Dominic Schmidt; Petra C Schwalie; Caryn S Ross-Innes; Antoni Hurtado; Gordon D Brown; Jason S Carroll; Paul Flicek; Duncan T Odom
Journal:  Genome Res       Date:  2010-03-10       Impact factor: 9.043

Review 6.  CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin.

Authors:  Rolf Ohlsson; Marek Bartkuhn; Rainer Renkawitz
Journal:  Chromosoma       Date:  2010-02-20       Impact factor: 4.316

7.  Systematic reduction of cohesin differentially affects chromosome segregation, condensation, and DNA repair.

Authors:  Jill M Heidinger-Pauli; Ozlem Mert; Carol Davenport; Vincent Guacci; Douglas Koshland
Journal:  Curr Biol       Date:  2010-05-06       Impact factor: 10.834

8.  Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome.

Authors:  Shimako Kawauchi; Anne L Calof; Rosaysela Santos; Martha E Lopez-Burks; Clint M Young; Michelle P Hoang; Abigail Chua; Taotao Lao; Mark S Lechner; Jeremy A Daniel; Andre Nussenzweig; Leonard Kitzes; Kyoko Yokomori; Benedikt Hallgrimsson; Arthur D Lander
Journal:  PLoS Genet       Date:  2009-09-18       Impact factor: 5.917

9.  Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus.

Authors:  Raffaella Nativio; Kerstin S Wendt; Yoko Ito; Joanna E Huddleston; Santiago Uribe-Lewis; Kathryn Woodfine; Christel Krueger; Wolf Reik; Jan-Michael Peters; Adele Murrell
Journal:  PLoS Genet       Date:  2009-11-26       Impact factor: 5.917

10.  Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.

Authors:  Suzana Hadjur; Luke M Williams; Natalie K Ryan; Bradley S Cobb; Tom Sexton; Peter Fraser; Amanda G Fisher; Matthias Merkenschlager
Journal:  Nature       Date:  2009-05-20       Impact factor: 49.962

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  109 in total

1.  Stromalin Constrains Memory Acquisition by Developmentally Limiting Synaptic Vesicle Pool Size.

Authors:  Anna Phan; Connon I Thomas; Molee Chakraborty; Jacob A Berry; Naomi Kamasawa; Ronald L Davis
Journal:  Neuron       Date:  2018-11-28       Impact factor: 17.173

Review 2.  Mutation spectrum and genotype-phenotype correlation in Cornelia de Lange syndrome.

Authors:  Linda Mannini; Francesco Cucco; Valentina Quarantotti; Ian D Krantz; Antonio Musio
Journal:  Hum Mutat       Date:  2013-09-16       Impact factor: 4.878

3.  A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.

Authors:  Zhong Deng; Zhuo Wang; Nick Stong; Robert Plasschaert; Aliah Moczan; Horng-Shen Chen; Sufeng Hu; Priyankara Wikramasinghe; Ramana V Davuluri; Marisa S Bartolomei; Harold Riethman; Paul M Lieberman
Journal:  EMBO J       Date:  2012-09-25       Impact factor: 11.598

4.  Wt1 flip-flops chromatin in a CTCF domain.

Authors:  B V Gurudatta; Victor G Corces
Journal:  Dev Cell       Date:  2011-09-13       Impact factor: 12.270

Review 5.  Eukaryotic enhancers: common features, regulation, and participation in diseases.

Authors:  Maksim Erokhin; Yegor Vassetzky; Pavel Georgiev; Darya Chetverina
Journal:  Cell Mol Life Sci       Date:  2015-02-26       Impact factor: 9.261

Review 6.  Cohesin codes - interpreting chromatin architecture and the many facets of cohesin function.

Authors:  Soumya Rudra; Robert V Skibbens
Journal:  J Cell Sci       Date:  2013-01-01       Impact factor: 5.285

7.  Transcriptional regulation of FoxO3 gene by glucocorticoids in murine myotubes.

Authors:  Taiyi Kuo; Patty H Liu; Tzu-Chieh Chen; Rebecca A Lee; Jenny New; Danyun Zhang; Cassandra Lei; Andy Chau; Yicheng Tang; Edna Cheung; Jen-Chywan Wang
Journal:  Am J Physiol Endocrinol Metab       Date:  2016-01-12       Impact factor: 4.310

8.  Wapl antagonizes cohesin binding and promotes Polycomb-group silencing in Drosophila.

Authors:  Melissa D Cunningham; Maria Gause; Yuzhong Cheng; Amanda Noyes; Dale Dorsett; James A Kennison; Judith A Kassis
Journal:  Development       Date:  2012-10-03       Impact factor: 6.868

9.  Cell cycle-specific cleavage of Scc2 regulates its cohesin deposition activity.

Authors:  Julie Woodman; Tyler Fara; Monika Dzieciatkowska; Michael Trejo; Nancy Luong; Kirk C Hansen; Paul C Megee
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

Review 10.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

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