Literature DB >> 23516328

Cohesin codes - interpreting chromatin architecture and the many facets of cohesin function.

Soumya Rudra1, Robert V Skibbens.   

Abstract

Sister chromatid tethering is maintained by cohesin complexes that minimally contain Smc1, Smc3, Mcd1 and Scc3. During S-phase, chromatin-associated cohesins are modified by the Eco1/Ctf7 family of acetyltransferases. Eco1 proteins function during S phase in the context of replicated sister chromatids to convert chromatin-bound cohesins to a tethering-competent state, but also during G2 and M phases in response to double-stranded breaks to promote error-free DNA repair. Cohesins regulate transcription and are essential for ribosome biogenesis and complete chromosome condensation. Little is known, however, regarding the mechanisms through which cohesin functions are directed. Recent findings reveal that Eco1-mediated acetylation of different lysine residues in Smc3 during S phase promote either cohesion or condensation. Phosphorylation and SUMOylation additionally impact cohesin functions. Here, we posit the existence of a cohesin code, analogous to the histone code introduced over a decade ago, and speculate that there is a symphony of post-translational modifications that direct cohesins to function across a myriad of cellular processes. We also discuss evidence that outdate the notion that cohesion defects are singularly responsible for cohesion-mutant-cell inviability. We conclude by proposing that cohesion establishment is linked to chromatin formation.

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Year:  2013        PMID: 23516328      PMCID: PMC3603509          DOI: 10.1242/jcs.116566

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  149 in total

Review 1.  Holding your own: establishing sister chromatid cohesion.

Authors:  R V Skibbens
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

2.  Molecular architecture of SMC proteins and the yeast cohesin complex.

Authors:  Christian H Haering; Jan Löwe; Andreas Hochwagen; Kim Nasmyth
Journal:  Mol Cell       Date:  2002-04       Impact factor: 17.970

3.  Requirement of heterochromatin for cohesion at centromeres.

Authors:  P Bernard; J F Maure; J F Partridge; S Genier; J P Javerzat; R C Allshire
Journal:  Science       Date:  2001-10-11       Impact factor: 47.728

4.  Establishment and maintenance of sister chromatid cohesion in fission yeast by a unique mechanism.

Authors:  K Tanaka; Z Hao; M Kai; H Okayama
Journal:  EMBO J       Date:  2001-10-15       Impact factor: 11.598

Review 5.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

6.  Pds5 cooperates with cohesin in maintaining sister chromatid cohesion.

Authors:  S Panizza; T Tanaka; A Hochwagen; F Eisenhaber; K Nasmyth
Journal:  Curr Biol       Date:  2000 Dec 14-28       Impact factor: 10.834

7.  Recruitment of cohesin to heterochromatic regions by Swi6/HP1 in fission yeast.

Authors:  Nobuhiro Nonaka; Tomoya Kitajima; Shihori Yokobayashi; Guoping Xiao; Masayuki Yamamoto; Shiv I S Grewal; Yoshinori Watanabe
Journal:  Nat Cell Biol       Date:  2002-01       Impact factor: 28.824

8.  Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion.

Authors:  Dmitri Ivanov; Alexander Schleiffer; Frank Eisenhaber; Karl Mechtler; Christian H Haering; Kim Nasmyth
Journal:  Curr Biol       Date:  2002-02-19       Impact factor: 10.834

9.  PCNA connects DNA replication to epigenetic inheritance in yeast.

Authors:  Z Zhang; K Shibahara; B Stillman
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

Review 10.  The diversity of acetylated proteins.

Authors:  Bogdan Polevoda; Fred Sherman
Journal:  Genome Biol       Date:  2002-04-30       Impact factor: 13.583

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  24 in total

1.  H2A.Z-dependent regulation of cohesin dynamics on chromosome arms.

Authors:  Claudia Tapia-Alveal; Su-Jiun Lin; Aaron Yeoh; Omar J Jabado; Matthew J O'Connell
Journal:  Mol Cell Biol       Date:  2014-03-31       Impact factor: 4.272

2.  Rtt101-Mms1-Mms22 coordinates replication-coupled sister chromatid cohesion and nucleosome assembly.

Authors:  Jingjing Zhang; Di Shi; Xiaoli Li; Lin Ding; Jun Tang; Cong Liu; Katsuhiko Shirahige; Qinhong Cao; Huiqiang Lou
Journal:  EMBO Rep       Date:  2017-06-14       Impact factor: 8.807

Review 3.  Condensins and cohesins - one of these things is not like the other!

Authors:  Robert V Skibbens
Journal:  J Cell Sci       Date:  2019-02-07       Impact factor: 5.285

4.  Reduced activity of Arabidopsis chromosome-cohesion regulator gene CTF7/ECO1 alters cytosine methylation status and retrotransposon expression.

Authors:  Pablo Bolaños-Villegas; Guang-Yuh Jauh
Journal:  Plant Signal Behav       Date:  2015

Review 5.  The Epigenetic Pathways to Ribosomal DNA Silencing.

Authors:  Rakesh Srivastava; Rashmi Srivastava; Seong Hoon Ahn
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-01       Impact factor: 11.056

6.  Glioblastoma cells containing mutations in the cohesin component STAG2 are sensitive to PARP inhibition.

Authors:  Melanie L Bailey; Nigel J O'Neil; Derek M van Pel; David A Solomon; Todd Waldman; Philip Hieter
Journal:  Mol Cancer Ther       Date:  2013-12-19       Impact factor: 6.261

Review 7.  Molecular functions and cellular roles of the ChlR1 (DDX11) helicase defective in the rare cohesinopathy Warsaw breakage syndrome.

Authors:  Sanjay Kumar Bharti; Irfan Khan; Taraswi Banerjee; Joshua A Sommers; Yuliang Wu; Robert M Brosh
Journal:  Cell Mol Life Sci       Date:  2014-02-01       Impact factor: 9.261

8.  Degradation of the Separase-cleaved Rec8, a Meiotic Cohesin Subunit, by the N-end Rule Pathway.

Authors:  Yu-Jiao Liu; Chao Liu; ZeNan Chang; Brandon Wadas; Christopher S Brower; Zhen-Hua Song; Zhi-Liang Xu; Yong-Liang Shang; Wei-Xiao Liu; Li-Na Wang; Wen Dong; Alexander Varshavsky; Rong-Gui Hu; Wei Li
Journal:  J Biol Chem       Date:  2016-02-08       Impact factor: 5.157

9.  Pds5 regulators segregate cohesion and condensation pathways in Saccharomyces cerevisiae.

Authors:  Kevin Tong; Robert V Skibbens
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

10.  Chl1 DNA helicase regulates Scc2 deposition specifically during DNA-replication in Saccharomyces cerevisiae.

Authors:  Soumya Rudra; Robert V Skibbens
Journal:  PLoS One       Date:  2013-09-26       Impact factor: 3.240

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