Literature DB >> 22922795

DExD/H-box RNA helicases in ribosome biogenesis.

Roman Martin1, Annika U Straub, Carmen Doebele, Markus T Bohnsack.   

Abstract

Ribosome synthesis requires a multitude of cofactors, among them DExD/H-box RNA helicases. Bacterial RNA helicases involved in ribosome assembly are not essential, while eukaryotes strictly require multiple DExD/H-box proteins that are involved in the much more complex ribosome biogenesis pathway. Here, RNA helicases are thought to act in structural remodeling of the RNPs including the modulation of protein binding, and they are required for allowing access or the release of specific snoRNPs from pre-ribosomes. Interestingly, helicase action is modulated by specific cofactors that can regulate recruitment and enzymatic activity. This review summarizes the current knowledge and focuses on recent findings and open questions on RNA helicase function and regulation in ribosome synthesis.

Entities:  

Keywords:  ATPase; RNA unwinding; RNP; snoRNA; translation

Mesh:

Substances:

Year:  2012        PMID: 22922795      PMCID: PMC3590236          DOI: 10.4161/rna.21879

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  179 in total

1.  Dhr1p, a putative DEAH-box RNA helicase, is associated with the box C+D snoRNP U3.

Authors:  A Colley; J D Beggs; D Tollervey; D L Lafontaine
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

2.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.

Authors:  Jorge Pérez-Fernández; Angel Román; Javier De Las Rivas; Xosé R Bustelo; Mercedes Dosil
Journal:  Mol Cell Biol       Date:  2007-05-21       Impact factor: 4.272

4.  Potential interface between ribosomal protein production and pre-rRNA processing.

Authors:  Dipayan Rudra; Jaideep Mallick; Yu Zhao; Jonathan R Warner
Journal:  Mol Cell Biol       Date:  2007-04-23       Impact factor: 4.272

5.  A novel helicase-type protein in the nucleolus: protein NOH61.

Authors:  R F Zirwes; J Eilbracht; S Kneissel; M S Schmidt-Zachmann
Journal:  Mol Biol Cell       Date:  2000-04       Impact factor: 4.138

6.  Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis.

Authors:  F Burger; M C Daugeron; P Linder
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

7.  DEAD-box RNA helicase subunits of the Drosha complex are required for processing of rRNA and a subset of microRNAs.

Authors:  Toru Fukuda; Kaoru Yamagata; Sally Fujiyama; Takahiro Matsumoto; Iori Koshida; Kimihiro Yoshimura; Masatomo Mihara; Masanori Naitou; Hideki Endoh; Takashi Nakamura; Chihiro Akimoto; Yoko Yamamoto; Takenobu Katagiri; Charles Foulds; Shinichiro Takezawa; Hirochika Kitagawa; Ken-ichi Takeyama; Bert W O'Malley; Shigeaki Kato
Journal:  Nat Cell Biol       Date:  2007-04-15       Impact factor: 28.824

Review 8.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

9.  C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing.

Authors:  Geurt Schilders; Erwin van Dijk; Ger J M Pruijn
Journal:  Nucleic Acids Res       Date:  2007-04-04       Impact factor: 16.971

10.  Redundant role of DEAD box proteins p68 (Ddx5) and p72/p82 (Ddx17) in ribosome biogenesis and cell proliferation.

Authors:  Carolin Jalal; Heike Uhlmann-Schiffler; Hans Stahl
Journal:  Nucleic Acids Res       Date:  2007-05-07       Impact factor: 16.971

View more
  57 in total

1.  RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2'-O-methylation.

Authors:  Gerald Ryan R Aquino; Nicolai Krogh; Philipp Hackert; Roman Martin; Jimena Davila Gallesio; Robert W van Nues; Claudia Schneider; Nicholas J Watkins; Henrik Nielsen; Katherine E Bohnsack; Markus T Bohnsack
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

Review 2.  Mitochondrial ribosome assembly in health and disease.

Authors:  Dasmanthie De Silva; Ya-Ting Tu; Alexey Amunts; Flavia Fontanesi; Antoni Barrientos
Journal:  Cell Cycle       Date:  2015-06-01       Impact factor: 4.534

Review 3.  RNA helicase proteins as chaperones and remodelers.

Authors:  Inga Jarmoskaite; Rick Russell
Journal:  Annu Rev Biochem       Date:  2014-03-12       Impact factor: 23.643

Review 4.  Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.

Authors:  Stefanie Gerstberger; Markus Hafner; Manuel Ascano; Thomas Tuschl
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

Review 5.  The multiple functions of RNA helicases as drivers and regulators of gene expression.

Authors:  Cyril F Bourgeois; Franck Mortreux; Didier Auboeuf
Journal:  Nat Rev Mol Cell Biol       Date:  2016-06-02       Impact factor: 94.444

6.  The G-patch activators Pfa1 and PINX1 exhibit different modes of interaction with the Prp43 RNA helicase.

Authors:  Saïda Mouffok; Régine Capeyrou; Kamila Belhabich-Baumas; Clément Joret; Anthony K Henras; Odile Humbert; Yves Henry
Journal:  RNA Biol       Date:  2020-10-30       Impact factor: 4.652

7.  Comprehensive analysis of the pre-ribosomal RNA maturation pathway in a methanoarchaeon exposes the conserved circularization and linearization mode in archaea.

Authors:  Lei Qi; Jie Li; Jia Jia; Lei Yue; Xiuzhu Dong
Journal:  RNA Biol       Date:  2020-06-19       Impact factor: 4.652

8.  Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16.

Authors:  Richa Sardana; Jieyi Zhu; Michael Gill; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2014-04-07       Impact factor: 4.272

Review 9.  Fitting CRISPR-associated Cas3 into the helicase family tree.

Authors:  Ryan N Jackson; Matthew Lavin; Joshua Carter; Blake Wiedenheft
Journal:  Curr Opin Struct Biol       Date:  2014-01-28       Impact factor: 6.809

Review 10.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.