Literature DB >> 21309707

Radiation metabolomics. 4. UPLC-ESI-QTOFMS-Based metabolomics for urinary biomarker discovery in gamma-irradiated rats.

Caroline H Johnson1, Andrew D Patterson, Kristopher W Krausz, Christian Lanz, Dong Wook Kang, Hans Luecke, Frank J Gonzalez, Jeffrey R Idle.   

Abstract

Radiation metabolomics has aided in the identification of a number of biomarkers in cells and mice by ultra-performance liquid chromatography-coupled time-of-flight mass spectrometry (UPLC-ESI-QTOFMS) and in rats by gas chromatography-coupled mass spectrometry (GCMS). These markers have been shown to be both dose- and time-dependent. Here UPLC-ESI-QTOFMS was used to analyze rat urine samples taken from 12 rats over 7 days; they were either sham-irradiated or γ-irradiated with 3 Gy after 4 days of metabolic cage acclimatization. Using multivariate data analysis, nine urinary biomarkers of γ radiation in rats were identified, including a novel mammalian metabolite, N-acetyltaurine. These upregulated urinary biomarkers were confirmed through tandem mass spectrometry and comparisons with authentic standards. They include thymidine, 2'-deoxyuridine, 2'deoxyxanthosine, N(1)-acetylspermidine, N-acetylglucosamine/galactosamine-6-sulfate, N-acetyltaurine, N-hexanoylglycine, taurine and, tentatively, isethionic acid. Of these metabolites, 2'-deoxyuridine and thymidine were previously identified in the rat by GCMS (observed as uridine and thymine) and in the mouse by UPLC-ESI-QTOFMS. 2'Deoxyxanthosine, taurine and N-hexanoylglycine were also seen in the mouse by UPLC-ESI-QTOFMS. These are now unequivocal cross-species biomarkers for ionizing radiation exposure. Downregulated biomarkers were shown to be related to food deprivation and starvation mechanisms. The UPLC-ESI-QTOFMS approach has aided in the advance for finding common biomarkers of ionizing radiation exposure.
© 2011 by Radiation Research Society

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Year:  2011        PMID: 21309707      PMCID: PMC3089756          DOI: 10.1667/RR2437.1

Source DB:  PubMed          Journal:  Radiat Res        ISSN: 0033-7587            Impact factor:   2.841


  27 in total

1.  Induction of stress genes by low doses of gamma rays.

Authors:  S A Amundson; K T Do; A J Fornace
Journal:  Radiat Res       Date:  1999-09       Impact factor: 2.841

2.  N-acetyltaurine dissimilated via taurine by Delftia acidovorans NAT.

Authors:  Jutta Mayer; Karin Denger; Theo H M Smits; Klaus Hollemeyer; Ulrich Groth; Alasdair M Cook
Journal:  Arch Microbiol       Date:  2006-06-21       Impact factor: 2.552

3.  UPLC-ESI-TOFMS-based metabolomics and gene expression dynamics inspector self-organizing metabolomic maps as tools for understanding the cellular response to ionizing radiation.

Authors:  Andrew D Patterson; Henghong Li; Gabriel S Eichler; Kristopher W Krausz; John N Weinstein; Albert J Fornace; Frank J Gonzalez; Jeffrey R Idle
Journal:  Anal Chem       Date:  2008-01-04       Impact factor: 6.986

4.  Radiation metabolomics. 1. Identification of minimally invasive urine biomarkers for gamma-radiation exposure in mice.

Authors:  John B Tyburski; Andrew D Patterson; Kristopher W Krausz; Josef Slavík; Albert J Fornace; Frank J Gonzalez; Jeffrey R Idle
Journal:  Radiat Res       Date:  2008-07       Impact factor: 2.841

5.  Effects of X irradiation on metabolism of proteoglycans.

Authors:  A Jikko; H Hiranuma; M Iwamoto; Y Kato; Y Okada; H Fuchihata
Journal:  Radiat Res       Date:  1996-07       Impact factor: 2.841

6.  Dodecanedioic acid overcomes metabolic inflexibility in type 2 diabetic subjects.

Authors:  Serenella Salinari; Alessandro Bertuzzi; Alberto Gandolfi; Aldo V Greco; Antonino Scarfone; Melania Manco; Geltrude Mingrone
Journal:  Am J Physiol Endocrinol Metab       Date:  2006-06-20       Impact factor: 4.310

7.  Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses.

Authors:  S A Amundson; M Bittner; Y Chen; J Trent; P Meltzer; A J Fornace
Journal:  Oncogene       Date:  1999-06-17       Impact factor: 9.867

8.  Effect of diet on the urinary excretion of hippuric acid and other dietary-derived aromatics in rat. A complex interaction between diet, gut microflora and substrate specificity.

Authors:  A N Phipps; J Stewart; B Wright; I D Wilson
Journal:  Xenobiotica       Date:  1998-05       Impact factor: 1.908

9.  In vitro radiation-induced expression of XPC mRNA as a possible biomarker for developing adverse reactions during radiotherapy.

Authors:  Katrin Wiebalk; Peter Schmezer; Silke Kropp; Jenny Chang-Claude; Oktay Celebi; Jürgen Debus; Helmut Bartsch; Odilia Popanda
Journal:  Int J Cancer       Date:  2007-11-15       Impact factor: 7.396

10.  Urinary N1-acetylspermidine and N8-acetylspermidine excretion in normal humans and in patients with colorectal cancer.

Authors:  B L O'Brien; M Hankewych; D McCormick; R Jacoby; T A Brasitus; A G Halline
Journal:  Dig Dis Sci       Date:  1995-06       Impact factor: 3.199

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  52 in total

1.  Comparison of mouse urinary metabolic profiles after exposure to the inflammatory stressors γ radiation and lipopolysaccharide.

Authors:  Evagelia C Laiakis; Daniel R Hyduke; Albert J Fornace
Journal:  Radiat Res       Date:  2011-11-30       Impact factor: 2.841

2.  Rapid and High-Throughput Detection and Quantitation of Radiation Biomarkers in Human and Nonhuman Primates by Differential Mobility Spectrometry-Mass Spectrometry.

Authors:  Zhidan Chen; Stephen L Coy; Evan L Pannkuk; Evagelia C Laiakis; Adam B Hall; Albert J Fornace; Paul Vouros
Journal:  J Am Soc Mass Spectrom       Date:  2016-07-08       Impact factor: 3.109

3.  CD47 Receptor Globally Regulates Metabolic Pathways That Control Resistance to Ionizing Radiation.

Authors:  Thomas W Miller; David R Soto-Pantoja; Anthony L Schwartz; John M Sipes; William G DeGraff; Lisa A Ridnour; David A Wink; David D Roberts
Journal:  J Biol Chem       Date:  2015-08-26       Impact factor: 5.157

Review 4.  Effects of ionizing radiation on biological molecules--mechanisms of damage and emerging methods of detection.

Authors:  Julie A Reisz; Nidhi Bansal; Jiang Qian; Weiling Zhao; Cristina M Furdui
Journal:  Antioxid Redox Signal       Date:  2014-02-21       Impact factor: 8.401

5.  Intestinal microbiota-derived metabolomic blood plasma markers for prior radiation injury.

Authors:  Pilib Ó Broin; Bhavapriya Vaitheesvaran; Subhrajit Saha; Kirsten Hartil; Emily I Chen; Devorah Goldman; William Harv Fleming; Irwin J Kurland; Chandan Guha; Aaron Golden
Journal:  Int J Radiat Oncol Biol Phys       Date:  2015-02-01       Impact factor: 7.038

Review 6.  Metabolomic applications in radiation biodosimetry: exploring radiation effects through small molecules.

Authors:  Evan L Pannkuk; Albert J Fornace; Evagelia C Laiakis
Journal:  Int J Radiat Biol       Date:  2017-01-12       Impact factor: 2.694

7.  Development of a metabolomic radiation signature in urine from patients undergoing total body irradiation.

Authors:  Evagelia C Laiakis; Tytus D Mak; Sebastien Anizan; Sally A Amundson; Christopher A Barker; Suzanne L Wolden; David J Brenner; Albert J Fornace
Journal:  Radiat Res       Date:  2014-03-27       Impact factor: 2.841

8.  A study on the effect of the internal exposure to (210)Po on the excretion of urinary proteins in rats.

Authors:  Baki Sadi; Chunsheng Li; Raymond Ko; Joseph Daka; Hamdi Yusuf; Heather Wyatt; Joel Surette; Nick Priest; Nobuyuki Hamada
Journal:  Radiat Environ Biophys       Date:  2016-03-09       Impact factor: 1.925

9.  Metabolomics reveals aging-associated attenuation of noninvasive radiation biomarkers in mice: potential role of polyamine catabolism and incoherent DNA damage-repair.

Authors:  Soumen K Manna; Kristopher W Krausz; Jessica A Bonzo; Jeffrey R Idle; Frank J Gonzalez
Journal:  J Proteome Res       Date:  2013-04-24       Impact factor: 4.466

10.  Metabolomics: beyond biomarkers and towards mechanisms.

Authors:  Caroline H Johnson; Julijana Ivanisevic; Gary Siuzdak
Journal:  Nat Rev Mol Cell Biol       Date:  2016-03-16       Impact factor: 94.444

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