Literature DB >> 26979502

Metabolomics: beyond biomarkers and towards mechanisms.

Caroline H Johnson1, Julijana Ivanisevic2, Gary Siuzdak3.   

Abstract

Metabolomics, which is the profiling of metabolites in biofluids, cells and tissues, is routinely applied as a tool for biomarker discovery. Owing to innovative developments in informatics and analytical technologies, and the integration of orthogonal biological approaches, it is now possible to expand metabolomic analyses to understand the systems-level effects of metabolites. Moreover, because of the inherent sensitivity of metabolomics, subtle alterations in biological pathways can be detected to provide insight into the mechanisms that underlie various physiological conditions and aberrant processes, including diseases.

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Year:  2016        PMID: 26979502      PMCID: PMC5729912          DOI: 10.1038/nrm.2016.25

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  90 in total

1.  MetFusion: integration of compound identification strategies.

Authors:  Michael Gerlich; Steffen Neumann
Journal:  J Mass Spectrom       Date:  2013-03       Impact factor: 1.982

2.  Glycine and a glycine dehydrogenase (GLDC) SNP as citalopram/escitalopram response biomarkers in depression: pharmacometabolomics-informed pharmacogenomics.

Authors:  Y Ji; S Hebbring; H Zhu; G D Jenkins; J Biernacka; K Snyder; M Drews; O Fiehn; Z Zeng; D Schaid; D A Mrazek; R Kaddurah-Daouk; R M Weinshilboum
Journal:  Clin Pharmacol Ther       Date:  2010-11-24       Impact factor: 6.875

3.  Microbiota organization is a distinct feature of proximal colorectal cancers.

Authors:  Christine M Dejea; Elizabeth C Wick; Elizabeth M Hechenbleikner; James R White; Jessica L Mark Welch; Blair J Rossetti; Scott N Peterson; Erik C Snesrud; Gary G Borisy; Mark Lazarev; Ellen Stein; Jamuna Vadivelu; April C Roslani; Ausuma A Malik; Jane W Wanyiri; Khean L Goh; Iyadorai Thevambiga; Kai Fu; Fengyi Wan; Nicolas Llosa; Franck Housseau; Katharine Romans; XinQun Wu; Florencia M McAllister; Shaoguang Wu; Bert Vogelstein; Kenneth W Kinzler; Drew M Pardoll; Cynthia L Sears
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

4.  Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B.

Authors:  William R Wikoff; Samir Hanash; Brian DeFelice; Suzanne Miyamoto; Matt Barnett; Yang Zhao; Gary Goodman; Ziding Feng; David Gandara; Oliver Fiehn; Ayumu Taguchi
Journal:  J Clin Oncol       Date:  2015-08-17       Impact factor: 44.544

5.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

6.  Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota.

Authors:  Marie Vétizou; Jonathan M Pitt; Romain Daillère; Patricia Lepage; Nadine Waldschmitt; Caroline Flament; Sylvie Rusakiewicz; Bertrand Routy; Maria P Roberti; Connie P M Duong; Vichnou Poirier-Colame; Antoine Roux; Sonia Becharef; Silvia Formenti; Encouse Golden; Sascha Cording; Gerard Eberl; Andreas Schlitzer; Florent Ginhoux; Sridhar Mani; Takahiro Yamazaki; Nicolas Jacquelot; David P Enot; Marion Bérard; Jérôme Nigou; Paule Opolon; Alexander Eggermont; Paul-Louis Woerther; Elisabeth Chachaty; Nathalie Chaput; Caroline Robert; Christina Mateus; Guido Kroemer; Didier Raoult; Ivo Gomperts Boneca; Franck Carbonnel; Mathias Chamaillard; Laurence Zitvogel
Journal:  Science       Date:  2015-11-05       Impact factor: 47.728

7.  Radiation metabolomics. 5. Identification of urinary biomarkers of ionizing radiation exposure in nonhuman primates by mass spectrometry-based metabolomics.

Authors:  Caroline H Johnson; Andrew D Patterson; Kristopher W Krausz; John F Kalinich; John B Tyburski; Dong Wook Kang; Hans Luecke; Frank J Gonzalez; William F Blakely; Jeffrey R Idle
Journal:  Radiat Res       Date:  2012-09-06       Impact factor: 2.841

8.  Metabolic profiling detects early effects of environmental and lifestyle exposure to cadmium in a human population.

Authors:  James K Ellis; Toby J Athersuch; Laura D K Thomas; Friederike Teichert; Miriam Pérez-Trujillo; Claus Svendsen; David J Spurgeon; Rajinder Singh; Lars Järup; Jacob G Bundy; Hector C Keun
Journal:  BMC Med       Date:  2012-06-19       Impact factor: 8.775

Review 9.  Bioinformatics: the next frontier of metabolomics.

Authors:  Caroline H Johnson; Julijana Ivanisevic; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2014-11-20       Impact factor: 6.986

10.  Fat, fibre and cancer risk in African Americans and rural Africans.

Authors:  Stephen J D O'Keefe; Jia V Li; Leo Lahti; Junhai Ou; Franck Carbonero; Khaled Mohammed; Joram M Posma; James Kinross; Elaine Wahl; Elizabeth Ruder; Kishore Vipperla; Vasudevan Naidoo; Lungile Mtshali; Sebastian Tims; Philippe G B Puylaert; James DeLany; Alyssa Krasinskas; Ann C Benefiel; Hatem O Kaseb; Keith Newton; Jeremy K Nicholson; Willem M de Vos; H Rex Gaskins; Erwin G Zoetendal
Journal:  Nat Commun       Date:  2015-04-28       Impact factor: 14.919

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  513 in total

1.  Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults.

Authors:  Elaine A Yu; Tianwei Yu; Dean P Jones; Reynaldo Martorell; Manuel Ramirez-Zea; Aryeh D Stein
Journal:  J Nutr       Date:  2020-08-01       Impact factor: 4.798

2.  Metabolomics activity screening for identifying metabolites that modulate phenotype.

Authors:  Carlos Guijas; J Rafael Montenegro-Burke; Benedikt Warth; Mary E Spilker; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2018-04-05       Impact factor: 54.908

Review 3.  Metabolomics: A Primer.

Authors:  Xiaojing Liu; Jason W Locasale
Journal:  Trends Biochem Sci       Date:  2017-02-11       Impact factor: 13.807

4.  Serum metabolic signatures of subclinical atherosclerosis in patients with type 2 diabetes mellitus: a preliminary study.

Authors:  Jiaorong Su; Qing Zhao; Aihua Zhao; Wei Jia; Wei Zhu; Jingyi Lu; Xiaojing Ma
Journal:  Acta Diabetol       Date:  2021-04-19       Impact factor: 4.280

Review 5.  Targeted Therapy for Severe Asthma: Identifying the Right Patients.

Authors:  Kathy Low; Philip G Bardin
Journal:  Mol Diagn Ther       Date:  2017-06       Impact factor: 4.074

6.  Mass Spectrometry Fingerprints of Small-Molecule Metabolites in Biofluids: Building a Spectral Library of Recurrent Spectra for Urine Analysis.

Authors:  Yamil Simón-Manso; Ramesh Marupaka; Xinjian Yan; Yuxue Liang; Kelly H Telu; Yuri Mirokhin; Stephen E Stein
Journal:  Anal Chem       Date:  2019-08-30       Impact factor: 6.986

Review 7.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

8.  Liver metabolomics in a mouse model of erythropoietic protoporphyria.

Authors:  Pengcheng Wang; Madhav Sachar; Grace L Guo; Amina I Shehu; Jie Lu; Xiao-Bo Zhong; Xiaochao Ma
Journal:  Biochem Pharmacol       Date:  2018-06-12       Impact factor: 5.858

Review 9.  A review of applications of metabolomics in osteoarthritis.

Authors:  Jie-Ting Li; Ni Zeng; Zhi-Peng Yan; Tao Liao; Guo-Xin Ni
Journal:  Clin Rheumatol       Date:  2020-11-20       Impact factor: 2.980

Review 10.  Untargeted Metabolomics Strategies-Challenges and Emerging Directions.

Authors:  Alexandra C Schrimpe-Rutledge; Simona G Codreanu; Stacy D Sherrod; John A McLean
Journal:  J Am Soc Mass Spectrom       Date:  2016-09-13       Impact factor: 3.109

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