Literature DB >> 21308002

Concept Systems and Ontologies: Recommendations for Basic Terminology.

Gunnar O Klein1, Barry Smith.   

Abstract

This essay concerns the problems surrounding the use of the term "concept" in current ontology and terminology research. It is based on the constructive dialogue between realist ontology on the one hand and the world of formal standardization of health informatics on the other, but its conclusions are not restricted to the domain of medicine. The term "concept" is one of the most misused even in literature and technical standards which attempt to bring clarity. In this paper we propose to use the term "concept" in the context of producing defined professional terminologies with one specific and consistent meaning which we propose for adoption as the agreed meaning of the term in future terminological research, and specifically in the development of formal terminologies to be used in computer systems. We also discuss and propose new definitions of a set of cognate terms. We describe the relations governing the realm of concepts, and compare these to the richer and more complex set of relations obtaining between entities in the real world. On this basis we also summarize an associated terminology for ontologies as representations of the real world and a partial mapping between the world of concepts and the world of reality.

Entities:  

Year:  2010        PMID: 21308002      PMCID: PMC3034144          DOI: 10.1527/tjsai.25.433

Source DB:  PubMed          Journal:  Trans Jpn Soc Artif Intell        ISSN: 1346-0714


  9 in total

1.  From concepts to clinical reality: an essay on the benchmarking of biomedical terminologies.

Authors:  Barry Smith
Journal:  J Biomed Inform       Date:  2005-11-02       Impact factor: 6.317

2.  Wüsteria.

Authors:  Barry Smith; Werner Ceusters; Rita Temmerman
Journal:  Stud Health Technol Inform       Date:  2005

3.  HL7 RIM: an incoherent standard.

Authors:  Barry Smith; Werner Ceusters
Journal:  Stud Health Technol Inform       Date:  2006

4.  Referent tracking: the problem of negative findings.

Authors:  Werner Ceusters; Peter Elkin; Barry Smith
Journal:  Stud Health Technol Inform       Date:  2006

5.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

6.  The Ontology-Epistemology Divide: A Case Study in Medical Terminology.

Authors:  Olivier Bodenreider; Barry Smith; Anita Burgun
Journal:  Form Ontol Inf Syst       Date:  2004

7.  Relations in biomedical ontologies.

Authors:  Barry Smith; Werner Ceusters; Bert Klagges; Jacob Köhler; Anand Kumar; Jane Lomax; Chris Mungall; Fabian Neuhaus; Alan L Rector; Cornelius Rosse
Journal:  Genome Biol       Date:  2005-04-28       Impact factor: 13.583

8.  In defense of the Desiderata.

Authors:  James J Cimino
Journal:  J Biomed Inform       Date:  2005-12-09       Impact factor: 6.317

9.  On carcinomas and other pathological entities.

Authors:  Barry Smith; Anand Kumar; Werner Ceusters; Cornelius Rosse
Journal:  Comp Funct Genomics       Date:  2005
  9 in total
  1 in total

Review 1.  From concept representations to ontologies: a paradigm shift in health informatics?

Authors:  Stefan Schulz; Laszlo Balkanyi; Ronald Cornet; Olivier Bodenreider
Journal:  Healthc Inform Res       Date:  2013-12-31
  1 in total

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