Literature DB >> 16293444

From concepts to clinical reality: an essay on the benchmarking of biomedical terminologies.

Barry Smith1.   

Abstract

It is only by fixing on agreed meanings of terms in biomedical terminologies that we will be in a position to achieve that accumulation and integration of knowledge that is indispensable to progress at the frontiers of biomedicine. Standardly, the goal of fixing meanings is seen as being realized through the alignment of terms on what are called 'concepts.' Part I addresses three versions of the concept-based approach--by Cimino, by Wüster, and by Campbell and associates--and surveys some of the problems to which they give rise, all of which have to do with a failure to anchor the terms in terminologies to corresponding referents in reality. Part II outlines a new, realist solution to this anchorage problem, which sees terminology construction as being motivated by the goal of alignment not on concepts but on the universals (kinds, types) in reality and thereby also on the corresponding instances (individuals, tokens). We outline the realist approach and show how on its basis we can provide a benchmark of correctness for terminologies which will at the same time allow a new type of integration of terminologies and electronic health records. We conclude by outlining ways in which the framework thus defined might be exploited for purposes of diagnostic decision-support.

Mesh:

Year:  2005        PMID: 16293444     DOI: 10.1016/j.jbi.2005.09.005

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  21 in total

1.  Ontological realism: A methodology for coordinated evolution of scientific ontologies.

Authors:  Barry Smith; Werner Ceusters
Journal:  Appl Ontol       Date:  2010-11-15       Impact factor: 1.115

Review 2.  Advances in electronic-nose technologies developed for biomedical applications.

Authors:  Alphus D Wilson; Manuela Baietto
Journal:  Sensors (Basel)       Date:  2011-01-19       Impact factor: 3.576

Review 3.  Natural Language Processing methods and systems for biomedical ontology learning.

Authors:  Kaihong Liu; William R Hogan; Rebecca S Crowley
Journal:  J Biomed Inform       Date:  2010-07-18       Impact factor: 6.317

4.  Comparative analysis of two methods for wound bed area measurement.

Authors:  Sven Van Poucke; Roald Nelissen; Philippe Jorens; Yves Vander Haeghen
Journal:  Int Wound J       Date:  2010-10       Impact factor: 3.315

Review 5.  Bio-ontologies: current trends and future directions.

Authors:  Olivier Bodenreider; Robert Stevens
Journal:  Brief Bioinform       Date:  2006-08-09       Impact factor: 11.622

6.  A realism-based approach to the evolution of biomedical ontologies.

Authors:  Werner Ceusters; Barry Smith
Journal:  AMIA Annu Symp Proc       Date:  2006

7.  Concept Systems and Ontologies: Recommendations for Basic Terminology.

Authors:  Gunnar O Klein; Barry Smith
Journal:  Trans Jpn Soc Artif Intell       Date:  2010-01-01

Review 8.  From concept representations to ontologies: a paradigm shift in health informatics?

Authors:  Stefan Schulz; Laszlo Balkanyi; Ronald Cornet; Olivier Bodenreider
Journal:  Healthc Inform Res       Date:  2013-12-31

9.  Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms.

Authors:  Werner Ceusters; Barry Smith
Journal:  Web Semant       Date:  2006-07-11       Impact factor: 1.897

10.  Concepts and synonymy in the UMLS Metathesaurus.

Authors:  Gary H Merrill
Journal:  J Biomed Discov Collab       Date:  2009-10-14
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.