Literature DB >> 17108603

Referent tracking: the problem of negative findings.

Werner Ceusters1, Peter Elkin, Barry Smith.   

Abstract

The paradigm of referent tracking is based on a realist presupposition which rejects so-called negative entities (congenital absent nipple, and the like) as spurious. How, then, can a referent tracking-based Electronic Health Record deal with what are standardly called 'negative findings'? To answer this question we carried out an analysis of some 748 sentences drawn from patient charts and containing some form of negation. Our analysis shows that to deal with these sentences we need to introduce a new ontological relationship between a particular and a universal, which holds when no instance of the universal has a specific qualified ontological relation with the particular. This relation is found to be able to accommodate nearly all occurrences of negative findings in the examined sample, in ways which involve no reference to negative entities.

Entities:  

Mesh:

Year:  2006        PMID: 17108603

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  9 in total

1.  What particulars are referred to in Electronic Health Record data? A case study in integrating Referent Tracking into an EHR application.

Authors:  Ron Rudnicki; Werner Ceusters; Shahid Manzoor; Barry Smith
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

2.  Concept Systems and Ontologies: Recommendations for Basic Terminology.

Authors:  Gunnar O Klein; Barry Smith
Journal:  Trans Jpn Soc Artif Intell       Date:  2010-01-01

3.  A common layer of interoperability for biomedical ontologies based on OWL EL.

Authors:  Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala Wimalaratne; Dietrich Rebholz-Schuhmann; Paul Schofield; Georgios V Gkoutos
Journal:  Bioinformatics       Date:  2011-02-21       Impact factor: 6.937

Review 4.  Computational tools for comparative phenomics: the role and promise of ontologies.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Mamm Genome       Date:  2012-07-20       Impact factor: 2.957

5.  Applying the functional abnormality ontology pattern to anatomical functions.

Authors:  Robert Hoehndorf; Axel-Cyrille Ngonga Ngomo; Janet Kelso
Journal:  J Biomed Semantics       Date:  2010-03-31

6.  Relations as patterns: bridging the gap between OBO and OWL.

Authors:  Robert Hoehndorf; Anika Oellrich; Michel Dumontier; Janet Kelso; Dietrich Rebholz-Schuhmann; Heinrich Herre
Journal:  BMC Bioinformatics       Date:  2010-08-31       Impact factor: 3.169

7.  Unintended consequences of existential quantifications in biomedical ontologies.

Authors:  Martin Boeker; Ilinca Tudose; Janna Hastings; Daniel Schober; Stefan Schulz
Journal:  BMC Bioinformatics       Date:  2011-11-24       Impact factor: 3.169

8.  Framework for a protein ontology.

Authors:  Darren A Natale; Cecilia N Arighi; Winona C Barker; Judith Blake; Ti-Cheng Chang; Zhangzhi Hu; Hongfang Liu; Barry Smith; Cathy H Wu
Journal:  BMC Bioinformatics       Date:  2007-11-27       Impact factor: 3.169

9.  The anatomy of phenotype ontologies: principles, properties and applications.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Brief Bioinform       Date:  2018-09-28       Impact factor: 11.622

  9 in total

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