Literature DB >> 21298303

A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification.

Jotaro Igarashi1, Kazuo Kobayashi, Ariki Matsuoka.   

Abstract

Truncated hemoglobins (trHbs) are distributed from bacteria to unicellular eukaryotes and have roles in oxygen transport and nitric oxide detoxification. It is known that trHbs exist in ciliates of the Tetrahymena group, but trHb structure and function remain poorly understood. To investigate trHb function with respect to stability of bound oxygen and protein structure, we measured the oxygen binding kinetics of Tetrahymena pyriformis trHb, and determined the crystal structure of the protein. The O(2) association and dissociation rate constants of T. pyriformis trHb were 5.5 μM(-1 )s(-1) and 0.18 s(-1), respectively. The autooxidation rate constant was 3.8 × 10(-3) h(-1). These values are similar to those of HbN from Mycobacterium tuberculosis. The three-dimensional structure of an Fe(II)-O(2) complex of T. pyriformis trHb was determined at 1.73-Å resolution. Tyr25 (B10) and Gln46 (E7) were hydrogen-bonded to a heme-bound O(2) molecule. Tyr25 donated a hydrogen bond to the terminal oxygen atom, whereas Gln46 hydrogen-bonded to the proximal oxygen atom. Furthermore, Tyr25 was hydrogen-bonded to the Gln46 and Gln50 (E11) residues. Mutations at Tyr25, Gln46, and Gln50 increased the O(2) dissociation and autooxidation rate constants. An Fe(III)-H(2)O complex of T. pyriformis trHb was formed following reaction of the Fe(II)-O(2) complex of T. pyriformis trHb, in a crystal state, with nitric oxide. This suggests that T. pyriformis trHb functions in nitric oxide detoxification.

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Year:  2011        PMID: 21298303     DOI: 10.1007/s00775-011-0761-3

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  61 in total

1.  Crystal structure and ligand binding properties of the truncated hemoglobin from Geobacillus stearothermophilus.

Authors:  Andrea Ilari; Peter Kjelgaard; Claes von Wachenfeldt; Bruno Catacchio; Emilia Chiancone; Alberto Boffi
Journal:  Arch Biochem Biophys       Date:  2006-10-30       Impact factor: 4.013

2.  Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water.

Authors:  Yannick H Ouellet; Richard Daigle; Patrick Lagüe; David Dantsker; Mario Milani; Martino Bolognesi; Joel M Friedman; Michel Guertin
Journal:  J Biol Chem       Date:  2008-08-02       Impact factor: 5.157

3.  Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life.

Authors:  Serge N Vinogradov; David Hoogewijs; Xavier Bailly; Raúl Arredondo-Peter; Michel Guertin; Julian Gough; Sylvia Dewilde; Luc Moens; Jacques R Vanfleteren
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

4.  The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties.

Authors:  Laura Giangiacomo; Andrea Ilari; Alberto Boffi; Veronica Morea; Emilia Chiancone
Journal:  J Biol Chem       Date:  2004-12-07       Impact factor: 5.157

5.  Structural determinants in the group III truncated hemoglobin from Campylobacter jejuni.

Authors:  Marco Nardini; Alessandra Pesce; Marie Labarre; Christian Richard; Alessandro Bolli; Paolo Ascenzi; Michel Guertin; Martino Bolognesi
Journal:  J Biol Chem       Date:  2006-10-05       Impact factor: 5.157

6.  The structure of Ascaris hemoglobin domain I at 2.2 A resolution: molecular features of oxygen avidity.

Authors:  J Yang; A P Kloek; D E Goldberg; F S Mathews
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

7.  Ligand binding in the ferric and ferrous states of Paramecium hemoglobin.

Authors:  T K Das; R E Weber; S Dewilde; J B Wittenberg; B A Wittenberg; K Yamauchi; M L Van Hauwaert; L Moens; D L Rousseau
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

8.  A cyanobacterial hemoglobin with unusual ligand binding kinetics and stability properties.

Authors:  M V Thorsteinsson; D R Bevan; M Potts; Y Dou; R F Eich; M S Hargrove; Q H Gibson; J S Olson
Journal:  Biochemistry       Date:  1999-02-16       Impact factor: 3.162

9.  Myoglobin in a cyanobacterium.

Authors:  M Potts; S V Angeloni; R E Ebel; D Bassam
Journal:  Science       Date:  1992-06-19       Impact factor: 47.728

10.  Chlamydomonas chloroplast ferrous hemoglobin. Heme pocket structure and reactions with ligands.

Authors:  M Couture; T K Das; H C Lee; J Peisach; D L Rousseau; B A Wittenberg; J B Wittenberg; M Guertin
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

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  11 in total

1.  Structure of Chlamydomonas reinhardtii THB1, a group 1 truncated hemoglobin with a rare histidine-lysine heme ligation.

Authors:  Selena L Rice; Lauren E Boucher; Jamie L Schlessman; Matthew R Preimesberger; Jürgen Bosch; Juliette T J Lecomte
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-20       Impact factor: 1.056

2.  Replacement of the heme axial lysine as a test of conformational adaptability in the truncated hemoglobin THB1.

Authors:  Dillon B Nye; Eric A Johnson; Melissa H Mai; Juliette T J Lecomte
Journal:  J Inorg Biochem       Date:  2019-09-04       Impact factor: 4.155

3.  Lysine as a heme iron ligand: A property common to three truncated hemoglobins from Chlamydomonas reinhardtii.

Authors:  Eric A Johnson; Miranda M Russo; Dillon B Nye; Jamie L Schlessman; Juliette T J Lecomte
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-08-10       Impact factor: 3.770

4.  Covalent attachment of the heme to Synechococcus hemoglobin alters its reactivity toward nitric oxide.

Authors:  Matthew R Preimesberger; Eric A Johnson; Dillon B Nye; Juliette T J Lecomte
Journal:  J Inorg Biochem       Date:  2017-09-22       Impact factor: 4.155

5.  Lucina pectinata oxyhemoglobin (II-III) heterodimer pH susceptibility.

Authors:  Darya Marchany-Rivera; Clyde A Smith; Josiris D Rodriguez-Perez; Juan López-Garriga
Journal:  J Inorg Biochem       Date:  2020-03-07       Impact factor: 4.155

6.  Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins.

Authors:  Chiara Ciaccio; Francisco Ocaña-Calahorro; Enrica Droghetti; Grazia R Tundo; Emanuel Sanz-Luque; Fabio Polticelli; Paolo Visca; Giulietta Smulevich; Paolo Ascenzi; Massimo Coletta
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

Review 7.  Hemoglobin: a nitric-oxide dioxygenase.

Authors:  Paul R Gardner
Journal:  Scientifica (Cairo)       Date:  2012-12-19

8.  Characterization of THB1, a Chlamydomonas reinhardtii truncated hemoglobin: linkage to nitrogen metabolism and identification of lysine as the distal heme ligand.

Authors:  Eric A Johnson; Selena L Rice; Matthew R Preimesberger; Dillon B Nye; Lukas Gilevicius; Belinda B Wenke; Jason M Brown; George B Witman; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2014-07-09       Impact factor: 3.162

9.  Evolutionary and Functional Relationships in the Truncated Hemoglobin Family.

Authors:  Juan P Bustamante; Leandro Radusky; Leonardo Boechi; Darío A Estrin; Arjen Ten Have; Marcelo A Martí
Journal:  PLoS Comput Biol       Date:  2016-01-20       Impact factor: 4.475

10.  A bioinformatics insight to rhizobial globins: gene identification and mapping, polypeptide sequence and phenetic analysis, and protein modeling.

Authors:  Reinier Gesto-Borroto; Miriam Sánchez-Sánchez; Raúl Arredondo-Peter
Journal:  F1000Res       Date:  2015-05-13
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