Literature DB >> 32217352

Lucina pectinata oxyhemoglobin (II-III) heterodimer pH susceptibility.

Darya Marchany-Rivera1, Clyde A Smith2, Josiris D Rodriguez-Perez3, Juan López-Garriga4.   

Abstract

Lucina pectinata live in high concentrations of hydrogen sulfide (H2S) and contains one hemoglobin, Hemoglobin I (HbI), transporting H2S and two hemoglobins, Hemoglobin II (HbII) and Hemoglobin (HbIII), transferring dioxygen to symbionts. HbII and HbIII contain B10 tyrosine (Tyr) and E7 glutamine (Gln) in the heme pocket generating an efficient hydrogen bonding network with the (HbII-HbIII)-O2 species, leading to very low ligand dissociation rates. The results indicate that the oxy-hemeprotein is susceptible to pH from 4 to 9, at acidic conditions, and as a function of the potassium ferricyanide concentration, 100% of the met-aquo derivative is produced. Without a strong oxidant, pH 5 generates a small concentration of the met-aquo complex. The process is accelerated by the presence of salts, as indicated by the crystallization structures and UV-Vis spectra. The results suggest that acidic pH generates conformational changes associated with B10 and E7 heme pocket amino acids, weakening the (HbII-HbIII)-O2 hydrogen bond network. The observation is supported by X-ray crystallography, since at pH 4 and 5, the heme-Fe tends to oxidize, while at pH 7, the oxy-heterodimer is present. Conformational changes also are observed at higher pH by the presence of a 605 nm transition associated with the iron heme-Tyr interaction. Therefore, pH is one crucial factor regulating the (HbII-HbIII)-O2 complex hydrogen-bonding network. Thus, it can be proposed that the hydrogen bonding adjustments between the heme bound O2 and the Tyr and Gln amino acids contribute to oxygen dissociation from the (HbII-HbIII)-O2 system.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Glutamine; Hemeprotein; Oxygen release; Tyrosine; pH susceptibility

Mesh:

Substances:

Year:  2020        PMID: 32217352      PMCID: PMC7247926          DOI: 10.1016/j.jinorgbio.2020.111055

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  52 in total

1.  A cooperative oxygen-binding hemoglobin from Mycobacterium tuberculosis.

Authors:  M Couture; S R Yeh; B A Wittenberg; J B Wittenberg; Y Ouellet; D L Rousseau; M Guertin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use.

Authors:  Alexei A Vagin; Roberto A Steiner; Andrey A Lebedev; Liz Potterton; Stuart McNicholas; Fei Long; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 3.  Protein ionizable groups: pK values and their contribution to protein stability and solubility.

Authors:  C Nick Pace; Gerald R Grimsley; J Martin Scholtz
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

4.  A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification.

Authors:  Jotaro Igarashi; Kazuo Kobayashi; Ariki Matsuoka
Journal:  J Biol Inorg Chem       Date:  2011-02-05       Impact factor: 3.358

Review 5.  Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.

Authors:  Thomas K Harris; George J Turner
Journal:  IUBMB Life       Date:  2002-02       Impact factor: 3.885

6.  Tyrosine B10 and heme-ligand interactions of Lucina pectinata hemoglobin II: control of heme reactivity.

Authors:  Ruth Pietri; Laura Granell; Anthony Cruz; Walleska De Jesús; Ariel Lewis; Ruth Leon; Carmen L Cadilla; Juan López Garriga
Journal:  Biochim Biophys Acta       Date:  2004-12-19

7.  The mechanism of autooxidation of myoglobin.

Authors:  R E Brantley; S J Smerdon; A J Wilkinson; E W Singleton; J S Olson
Journal:  J Biol Chem       Date:  1993-04-05       Impact factor: 5.157

8.  Characterization of the full length mRNA coding for Lucina pectinata HbIII revealed an alternative polyadenylation site.

Authors:  Linda Rivera; Juán López-Garriga; Carmen L Cadilla
Journal:  Gene       Date:  2008-01-28       Impact factor: 3.688

9.  Structural analysis of heme proteins: implications for design and prediction.

Authors:  Ting Li; Herbert L Bonkovsky; Jun-tao Guo
Journal:  BMC Struct Biol       Date:  2011-03-03

10.  Nitrosylation mechanisms of Mycobacterium tuberculosis and Campylobacter jejuni truncated hemoglobins N, O, and P.

Authors:  Paolo Ascenzi; Alessandra di Masi; Grazia R Tundo; Alessandra Pesce; Paolo Visca; Massimo Coletta
Journal:  PLoS One       Date:  2014-07-22       Impact factor: 3.240

View more
  2 in total

1.  Fluoride binding to characteristic heme-pocket centers: Insights into ligand stability.

Authors:  Kaitlyn Frankenfield; Darya Marchany-Rivera; Kayla G Flanders; Anthony Cruz-Balberdy; Juan Lopez-Garriga; Jose F Cerda
Journal:  J Inorg Biochem       Date:  2021-08-17       Impact factor: 4.155

2.  SAXS structure of homodimeric oxyHemoglobin III from bivalve Lucina pectinata.

Authors:  Darya Marchany-Rivera; Rafael A Estremera-Andújar; Carlos Nieves-Marrero; Carlos R Ruiz-Martínez; William Bauer; Juan López-Garriga
Journal:  Biopolymers       Date:  2021-04-01       Impact factor: 2.240

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.