Literature DB >> 30251657

Lysine as a heme iron ligand: A property common to three truncated hemoglobins from Chlamydomonas reinhardtii.

Eric A Johnson1, Miranda M Russo1, Dillon B Nye1, Jamie L Schlessman2, Juliette T J Lecomte3.   

Abstract

BACKGROUND: The nuclear genome of Chlamydomonas reinhardtii encodes a dozen hemoglobins of the truncated lineage. Four of these, named THB1-4, contain a single ~130-residue globin unit. THB1, which is cytoplasmic and capable of nitric oxide dioxygenation activity, uses a histidine and a lysine as axial ligands to the heme iron. In the present report, we compared THB2, THB3, and THB4 to THB1 to gain structural and functional insights into algal globins.
METHODS: We inspected properties of the globin domains prepared by recombinant means through site-directed mutagenesis, electronic absorption, CD, and NMR spectroscopies, and X-ray crystallography.
RESULTS: Recombinant THB3, which lacks the proximal histidine but has a distal histidine, binds heme weakly. NMR data demonstrate that the recombinant domains of THB2 and THB4 coordinate the ferrous heme iron with the proximal histidine and a lysine from the distal helix. An X-ray structure of ferric THB4 confirms lysine coordination. THB1, THB2, and THB4 have reduction potentials between -65 and -100 mV, are capable of nitric oxide dioxygenation, are reduced at different rates by the diaphorase domain of C. reinhardtii nitrate reductase, and show different response to peroxide treatment.
CONCLUSIONS: Three single-domain C. reinhardtii hemoglobins use lysine as a distal heme ligand in both Fe(III) and Fe(II) oxidation states. This common feature is likely related to enzymatic activity in the management of reactive oxygen species. GENERAL SIGNIFICANCE: Primary structure analysis of hemoglobins has limited power in the prediction of heme ligation. Experimental determination reveals variations in this essential property across the superfamily.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  2-over-2 hemoglobin; Heme reduction potential; Nitric oxide dioxygenase; Nuclear magnetic resonance

Mesh:

Substances:

Year:  2018        PMID: 30251657      PMCID: PMC6214630          DOI: 10.1016/j.bbagen.2018.08.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gen Subj        ISSN: 0304-4165            Impact factor:   3.770


  73 in total

1.  A phylogenetic and structural analysis of truncated hemoglobins.

Authors:  David A Vuletich; Juliette T J Lecomte
Journal:  J Mol Evol       Date:  2006-02-10       Impact factor: 2.395

2.  Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions.

Authors:  Ryan Sturms; Alan A DiSpirito; Mark S Hargrove
Journal:  Biochemistry       Date:  2011-04-20       Impact factor: 3.162

3.  Copper response regulator1-dependent and -independent responses of the Chlamydomonas reinhardtii transcriptome to dark anoxia.

Authors:  Anja Hemschemeier; David Casero; Bensheng Liu; Christoph Benning; Matteo Pellegrini; Thomas Happe; Sabeeha S Merchant
Journal:  Plant Cell       Date:  2013-09-06       Impact factor: 11.277

4.  Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates.

Authors:  Dillon B Nye; Matthew R Preimesberger; Ananya Majumdar; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2018-01-10       Impact factor: 3.162

5.  Bacterial and archaeal globins - a revised perspective.

Authors:  Serge N Vinogradov; Mariana Tinajero-Trejo; Robert K Poole; David Hoogewijs
Journal:  Biochim Biophys Acta       Date:  2013-03-27

6.  Chlamydomonas chloroplast ferrous hemoglobin. Heme pocket structure and reactions with ligands.

Authors:  M Couture; T K Das; H C Lee; J Peisach; D L Rousseau; B A Wittenberg; J B Wittenberg; M Guertin
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

7.  Structural characterization of the tunnels of Mycobacterium tuberculosis truncated hemoglobin N from molecular dynamics simulations.

Authors:  Richard Daigle; Michel Guertin; Patrick Lagüe
Journal:  Proteins       Date:  2009-05-15

8.  Analysis of the electrochemistry of hemes with E(m)s spanning 800 mV.

Authors:  Zhong Zheng; M R Gunner
Journal:  Proteins       Date:  2009-05-15

9.  Characterization of THB1, a Chlamydomonas reinhardtii truncated hemoglobin: linkage to nitrogen metabolism and identification of lysine as the distal heme ligand.

Authors:  Eric A Johnson; Selena L Rice; Matthew R Preimesberger; Dillon B Nye; Lukas Gilevicius; Belinda B Wenke; Jason M Brown; George B Witman; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2014-07-09       Impact factor: 3.162

10.  A simple method for the determination of reduction potentials in heme proteins.

Authors:  Igor Efimov; Gary Parkin; Elizabeth S Millett; Jennifer Glenday; Cheuk K Chan; Holly Weedon; Harpreet Randhawa; Jaswir Basran; Emma L Raven
Journal:  FEBS Lett       Date:  2014-01-17       Impact factor: 4.124

View more
  4 in total

1.  Replacement of the heme axial lysine as a test of conformational adaptability in the truncated hemoglobin THB1.

Authors:  Dillon B Nye; Eric A Johnson; Melissa H Mai; Juliette T J Lecomte
Journal:  J Inorg Biochem       Date:  2019-09-04       Impact factor: 4.155

2.  Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.

Authors:  Hiro Nakamura; Tamao Hisano; Md Mahfuzur Rahman; Takehiko Tosha; Mikako Shirouzu; Yoshitsugu Shiro
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-29       Impact factor: 12.779

3.  Truncated Hemoglobins 1 and 2 Are Implicated in the Modulation of Phosphorus Deficiency-Induced Nitric Oxide Levels in Chlamydomonas.

Authors:  Valentina Filina; Alexandra Grinko; Elena Ermilova
Journal:  Cells       Date:  2019-08-21       Impact factor: 6.600

4.  Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.

Authors:  Dennis Huwald; Sabrina Duda; Raphael Gasper; Vincent Olieric; Eckhard Hofmann; Anja Hemschemeier
Journal:  J Biol Inorg Chem       Date:  2020-02-11       Impact factor: 3.358

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.