Literature DB >> 21297641

Rapid and efficient clathrin-mediated endocytosis revealed in genome-edited mammalian cells.

Jeffrey B Doyon1, Bryan Zeitler, Jackie Cheng, Aaron T Cheng, Jennifer M Cherone, Yolanda Santiago, Andrew H Lee, Thuy D Vo, Yannick Doyon, Jeffrey C Miller, David E Paschon, Lei Zhang, Edward J Rebar, Philip D Gregory, Fyodor D Urnov, David G Drubin.   

Abstract

Clathrin-mediated endocytosis (CME) is the best-studied pathway by which cells selectively internalize molecules from the plasma membrane and surrounding environment. Previous live-cell imaging studies using ectopically overexpressed fluorescent fusions of endocytic proteins indicated that mammalian CME is a highly dynamic but inefficient and heterogeneous process. In contrast, studies of endocytosis in budding yeast using fluorescent protein fusions expressed at physiological levels from native genomic loci have revealed a process that is very regular and efficient. To analyse endocytic dynamics in mammalian cells in which endogenous protein stoichiometry is preserved, we targeted zinc finger nucleases (ZFNs) to the clathrin light chain A and dynamin-2 genomic loci and generated cell lines expressing fluorescent protein fusions from each locus. The genome-edited cells exhibited enhanced endocytic function, dynamics and efficiency when compared with previously studied cells, indicating that CME is highly sensitive to the levels of its protein components. Our study establishes that ZFN-mediated genome editing is a robust tool for expressing protein fusions at endogenous levels to faithfully report subcellular localization and dynamics.
© 2011 Macmillan Publishers Limited. All rights reserved

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Year:  2011        PMID: 21297641      PMCID: PMC4113319          DOI: 10.1038/ncb2175

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  37 in total

Review 1.  Biological basket weaving: formation and function of clathrin-coated vesicles.

Authors:  F M Brodsky; C Y Chen; C Knuehl; M C Towler; D E Wakeham
Journal:  Annu Rev Cell Dev Biol       Date:  2001       Impact factor: 13.827

2.  Endocytosis by random initiation and stabilization of clathrin-coated pits.

Authors:  Marcelo Ehrlich; Werner Boll; Antoine Van Oijen; Ramesh Hariharan; Kartik Chandran; Max L Nibert; Tomas Kirchhausen
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

3.  Transient cold shock enhances zinc-finger nuclease-mediated gene disruption.

Authors:  Yannick Doyon; Vivian M Choi; Danny F Xia; Thuy D Vo; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

4.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

5.  Dynamics of clathrin and adaptor proteins during endocytosis.

Authors:  Joshua Z Rappoport; Shahrnaz Kemal; Alexandre Benmerah; Sanford M Simon
Journal:  Am J Physiol Cell Physiol       Date:  2006-11       Impact factor: 4.249

Review 6.  Replication of hepatitis C virus.

Authors:  Darius Moradpour; François Penin; Charles M Rice
Journal:  Nat Rev Microbiol       Date:  2007-05-08       Impact factor: 60.633

7.  Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits.

Authors:  Marcel Mettlen; Miriam Stoeber; Dinah Loerke; Costin N Antonescu; Gaudenz Danuser; Sandra L Schmid
Journal:  Mol Biol Cell       Date:  2009-05-20       Impact factor: 4.138

8.  Cargo- and adaptor-specific mechanisms regulate clathrin-mediated endocytosis.

Authors:  Marcel Mettlen; Dinah Loerke; Defne Yarar; Gaudenz Danuser; Sandra L Schmid
Journal:  J Cell Biol       Date:  2010-03-15       Impact factor: 10.539

9.  Multiple proteolytic systems, including the proteasome, contribute to CFTR processing.

Authors:  T J Jensen; M A Loo; S Pind; D B Williams; A L Goldberg; J R Riordan
Journal:  Cell       Date:  1995-10-06       Impact factor: 41.582

10.  Clathrin exchange during clathrin-mediated endocytosis.

Authors:  X Wu; X Zhao; L Baylor; S Kaushal; E Eisenberg; L E Greene
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539

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  124 in total

1.  Functional analysis of interaction sites on the N-terminal domain of clathrin heavy chain.

Authors:  Anna K Willox; Stephen J Royle
Journal:  Traffic       Date:  2011-10-20       Impact factor: 6.215

2.  Gene editing: not just for translation anymore.

Authors:  Moira A McMahon; Meghdad Rahdar; Matthew Porteus
Journal:  Nat Methods       Date:  2011-12-28       Impact factor: 28.547

3.  Spatial organization of EphA2 at the cell-cell interface modulates trans-endocytosis of ephrinA1.

Authors:  Adrienne C Greene; Samuel J Lord; Aiwei Tian; Christopher Rhodes; Hiroyuki Kai; Jay T Groves
Journal:  Biophys J       Date:  2014-05-20       Impact factor: 4.033

4.  An unbiased genome-wide analysis of zinc-finger nuclease specificity.

Authors:  Richard Gabriel; Angelo Lombardo; Anne Arens; Jeffrey C Miller; Pietro Genovese; Christine Kaeppel; Ali Nowrouzi; Cynthia C Bartholomae; Jianbin Wang; Geoffrey Friedman; Michael C Holmes; Philip D Gregory; Hanno Glimm; Manfred Schmidt; Luigi Naldini; Christof von Kalle
Journal:  Nat Biotechnol       Date:  2011-08-07       Impact factor: 54.908

Review 5.  Imaging methodologies for systems biology.

Authors:  Sarah E Smith; Brian D Slaughter; Jay R Unruh
Journal:  Cell Adh Migr       Date:  2014-11-01       Impact factor: 3.405

6.  Sequence-Specific Regulation of Endocytic Lifetimes Modulates Arrestin-Mediated Signaling at the µ Opioid Receptor.

Authors:  Zara Y Weinberg; Amanda S Zajac; Tiffany Phan; Daniel J Shiwarski; Manojkumar A Puthenveedu
Journal:  Mol Pharmacol       Date:  2017-02-02       Impact factor: 4.436

Review 7.  Advances in targeted genome editing.

Authors:  Pablo Perez-Pinera; David G Ousterout; Charles A Gersbach
Journal:  Curr Opin Chem Biol       Date:  2012-07-20       Impact factor: 8.822

Review 8.  2D Nanoclay for Biomedical Applications: Regenerative Medicine, Therapeutic Delivery, and Additive Manufacturing.

Authors:  Akhilesh K Gaharwar; Lauren M Cross; Charles W Peak; Karli Gold; James K Carrow; Anna Brokesh; Kanwar Abhay Singh
Journal:  Adv Mater       Date:  2019-04-03       Impact factor: 30.849

9.  Rab10-mediated endocytosis of the hyaluronan synthase HAS3 regulates hyaluronan synthesis and cell adhesion to collagen.

Authors:  Ashik Jawahar Deen; Kirsi Rilla; Sanna Oikari; Riikka Kärnä; Genevieve Bart; Jukka Häyrinen; Avinash Rahul Bathina; Antti Ropponen; Katri Makkonen; Raija H Tammi; Markku I Tammi
Journal:  J Biol Chem       Date:  2014-02-07       Impact factor: 5.157

10.  The Sla1 adaptor-clathrin interaction regulates coat formation and progression of endocytosis.

Authors:  Thomas O Tolsma; Lena M Cuevas; Santiago M Di Pietro
Journal:  Traffic       Date:  2018-04-11       Impact factor: 6.215

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