Literature DB >> 25482526

Imaging methodologies for systems biology.

Sarah E Smith1, Brian D Slaughter, Jay R Unruh.   

Abstract

Systems biology has recently achieved significant success in the understanding of complex interconnected phenomena such as cell polarity and migration. In this context, the definition of systems biology has come to encompass the integration of quantitative measurements with sophisticated modeling approaches. This article will review recent progress in live cell imaging technologies that have expanded the possibilities of quantitative in vivo measurements, particularly in regards to molecule counting and quantitative measurements of protein concentration and dynamics. These methods have gained and continue to gain popularity with the biological community. In general, we will discuss three broad categories: protein interactions, protein quantitation, and protein dynamics.

Keywords:  FRAP; calibrated imaging; cell migration; cell polarization; fluorescence correlation spectroscopy; stoichiometry

Mesh:

Year:  2014        PMID: 25482526      PMCID: PMC4594334          DOI: 10.4161/cam.29152

Source DB:  PubMed          Journal:  Cell Adh Migr        ISSN: 1933-6918            Impact factor:   3.405


  48 in total

1.  Fluorescence-intensity distribution analysis and its application in biomolecular detection technology.

Authors:  P Kask; K Palo; D Ullmann; K Gall
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Fluorescence correlation spectroscopy with single-molecule sensitivity on cell and model membranes.

Authors:  P Schwille; J Korlach; W W Webb
Journal:  Cytometry       Date:  1999-07-01

Review 3.  Cdc42--the centre of polarity.

Authors:  Sandrine Etienne-Manneville
Journal:  J Cell Sci       Date:  2004-03-15       Impact factor: 5.285

4.  Spatial mapping of integrin interactions and dynamics during cell migration by image correlation microscopy.

Authors:  Paul W Wiseman; Claire M Brown; Donna J Webb; Benedict Hebert; Natalie L Johnson; Jeff A Squier; Mark H Ellisman; A F Horwitz
Journal:  J Cell Sci       Date:  2004-10-12       Impact factor: 5.285

5.  Spatiotemporal image correlation spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells.

Authors:  Benedict Hebert; Santiago Costantino; Paul W Wiseman
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

6.  Forward-backward non-linear filtering technique for extracting small biological signals from noise.

Authors:  S H Chung; R A Kennedy
Journal:  J Neurosci Methods       Date:  1991-11       Impact factor: 2.390

7.  Scanning two-photon fluctuation correlation spectroscopy: particle counting measurements for detection of molecular aggregation.

Authors:  K M Berland; P T So; Y Chen; W W Mantulin; E Gratton
Journal:  Biophys J       Date:  1996-07       Impact factor: 4.033

8.  Flippase-mediated phospholipid asymmetry promotes fast Cdc42 recycling in dynamic maintenance of cell polarity.

Authors:  Arupratan Das; Brian D Slaughter; Jay R Unruh; William D Bradford; Richard Alexander; Boris Rubinstein; Rong Li
Journal:  Nat Cell Biol       Date:  2012-02-19       Impact factor: 28.824

9.  Counting cytokinesis proteins globally and locally in fission yeast.

Authors:  Jian-Qiu Wu; Thomas D Pollard
Journal:  Science       Date:  2005-10-14       Impact factor: 47.728

10.  Robust cell polarity is a dynamic state established by coupling transport and GTPase signaling.

Authors:  Roland Wedlich-Soldner; Stephanie C Wai; Thomas Schmidt; Rong Li
Journal:  J Cell Biol       Date:  2004-09-07       Impact factor: 10.539

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  3 in total

1.  An Object-Oriented Regression for Building Disease Predictive Models with Multiallelic HLA Genes.

Authors:  Lue Ping Zhao; Hamid Bolouri; Michael Zhao; Daniel E Geraghty; Åke Lernmark
Journal:  Genet Epidemiol       Date:  2016-05       Impact factor: 2.135

2.  Structural plasticity of the living kinetochore.

Authors:  Karthik Dhatchinamoorthy; Manjunatha Shivaraju; Jeffrey J Lange; Boris Rubinstein; Jay R Unruh; Brian D Slaughter; Jennifer L Gerton
Journal:  J Cell Biol       Date:  2017-09-22       Impact factor: 10.539

Review 3.  Quantitative dynamics of VE-cadherin at endothelial cell junctions at a glance: basic requirements and current concepts.

Authors:  Jochen Seebach; Jiahui Cao; Hans Joachim Schnittler
Journal:  Discoveries (Craiova)       Date:  2016-08-24
  3 in total

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