Literature DB >> 21293879

A dynamic model for genome-wide association studies.

Kiranmoy Das1, Jiahan Li, Zhong Wang, Chunfa Tong, Guifang Fu, Yao Li, Meng Xu, Kwangmi Ahn, David Mauger, Runze Li, Rongling Wu.   

Abstract

Although genome-wide association studies (GWAS) are widely used to identify the genetic and environmental etiology of a trait, several key issues related to their statistical power and biological relevance have remained unexplored. Here, we describe a novel statistical approach, called functional GWAS or fGWAS, to analyze the genetic control of traits by integrating biological principles of trait formation into the GWAS framework through mathematical and statistical bridges. fGWAS can address many fundamental questions, such as the patterns of genetic control over development, the duration of genetic effects, as well as what causes developmental trajectories to change or stop changing. In statistics, fGWAS displays increased power for gene detection by capitalizing on cumulative phenotypic variation in a longitudinal trait over time and increased robustness for manipulating sparse longitudinal data.

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Year:  2011        PMID: 21293879      PMCID: PMC3103104          DOI: 10.1007/s00439-011-0960-6

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  42 in total

1.  Functional mapping of quantitative trait loci underlying the character process: a theoretical framework.

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2.  Functional mapping for genetic control of programmed cell death.

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3.  Nonparametric functional mapping of quantitative trait loci.

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4.  Semiparametric estimation of covariance matrices for longitudinal data.

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5.  Functional clustering of periodic transcriptional profiles through ARMA(p,q).

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6.  Genome-wide association study identifies five susceptibility loci for glioma.

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Review 8.  Genomewide association studies: history, rationale, and prospects for psychiatric disorders.

Authors:  Sven Cichon; Nick Craddock; Mark Daly; Stephen V Faraone; Pablo V Gejman; John Kelsoe; Thomas Lehner; Douglas F Levinson; Audra Moran; Pamela Sklar; Patrick F Sullivan
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Review 9.  Genome-wide association studies provide new insights into type 2 diabetes aetiology.

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Journal:  Nat Rev Genet       Date:  2007-09       Impact factor: 53.242

10.  Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.

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Journal:  PLoS Genet       Date:  2007-07       Impact factor: 5.917

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  34 in total

1.  Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models.

Authors:  Liang He; Mikko J Sillanpää; Karri Silventoinen; Jaakko Kaprio; Janne Pitkäniemi
Journal:  Genetics       Date:  2016-02-11       Impact factor: 4.562

2.  A FAST ALGORITHM FOR DETECTING GENE-GENE INTERACTIONS IN GENOME-WIDE ASSOCIATION STUDIES.

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3.  Using a system of differential equations that models cattle growth to uncover the genetic basis of complex traits.

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4.  BAYESIAN GROUP LASSO FOR NONPARAMETRIC VARYING-COEFFICIENT MODELS WITH APPLICATION TO FUNCTIONAL GENOME-WIDE ASSOCIATION STUDIES.

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Review 5.  Asthma Genetics in the Post-GWAS Era.

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6.  A time-varying group sparse additive model for genome-wide association studies of dynamic complex traits.

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7.  Longitudinal SNP-set association analysis of quantitative phenotypes.

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8.  Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice.

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9.  Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.

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Review 10.  Bringing a developmental perspective to anxiety genetics.

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