Literature DB >> 27027959

Asthma Genetics in the Post-GWAS Era.

Carole Ober1.   

Abstract

Genome-wide association studies (GWAS) of asthma have yielded exciting results and identified novel risk alleles and loci. But, like other common complex diseases, asthma-associated alleles have small effect sizes and account for little of the prevalence of asthma. In this review, I discuss the limitations of GWAS approaches and the major challenges facing geneticists in the post-GWAS era and propose alternative strategies to address these challenges. In particular, I propose that focusing on genetic variations that influences gene expression and using cell models of gene-environment interactions in cell types that are relevant to asthma will allow us to more completely characterize the genetic architecture of asthma.

Entities:  

Keywords:  asthma; epigenomics; gene-environment interaction; genetic variation; quantitative trait loci

Mesh:

Year:  2016        PMID: 27027959      PMCID: PMC5015734          DOI: 10.1513/AnnalsATS.201507-459MG

Source DB:  PubMed          Journal:  Ann Am Thorac Soc        ISSN: 2325-6621


  72 in total

1.  Reduced risk of hay fever and asthma among children of farmers.

Authors:  O S Von Ehrenstein; E Von Mutius; S Illi; L Baumann; O Böhm; R von Kries
Journal:  Clin Exp Allergy       Date:  2000-02       Impact factor: 5.018

2.  A Polymorphism* in the 5' flanking region of the CD14 gene is associated with circulating soluble CD14 levels and with total serum immunoglobulin E.

Authors:  M Baldini; I C Lohman; M Halonen; R P Erickson; P G Holt; F D Martinez
Journal:  Am J Respir Cell Mol Biol       Date:  1999-05       Impact factor: 6.914

3.  Opposite effects of CD 14/-260 on serum IgE levels in children raised in different environments.

Authors:  Waltraud Eder; Walt Klimecki; Lizhi Yu; Erika von Mutius; Josef Riedler; Charlotte Braun-Fahrländer; Dennis Nowak; Fernando D Martinez
Journal:  J Allergy Clin Immunol       Date:  2005-09       Impact factor: 10.793

4.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

5.  Effect of 17q21 variants and smoking exposure in early-onset asthma.

Authors:  Emmanuelle Bouzigon; Eve Corda; Hugues Aschard; Marie-Hélène Dizier; Anne Boland; Jean Bousquet; Nicolas Chateigner; Frédéric Gormand; Jocelyne Just; Nicole Le Moual; Pierre Scheinmann; Valérie Siroux; Daniel Vervloet; Diana Zelenika; Isabelle Pin; Francine Kauffmann; Mark Lathrop; Florence Demenais
Journal:  N Engl J Med       Date:  2008-10-15       Impact factor: 91.245

6.  Cross-tissue and tissue-specific eQTLs: partitioning the heritability of a complex trait.

Authors:  Jason M Torres; Eric R Gamazon; Esteban J Parra; Jennifer E Below; Adan Valladares-Salgado; Niels Wacher; Miguel Cruz; Craig L Hanis; Nancy J Cox
Journal:  Am J Hum Genet       Date:  2014-10-30       Impact factor: 11.025

7.  Exposure to farming in early life and development of asthma and allergy: a cross-sectional survey.

Authors:  J Riedler; C Braun-Fahrländer; W Eder; M Schreuer; M Waser; S Maisch; D Carr; R Schierl; D Nowak; E von Mutius
Journal:  Lancet       Date:  2001-10-06       Impact factor: 79.321

Review 8.  Gene-environment interactions in human disease: nuisance or opportunity?

Authors:  Carole Ober; Donata Vercelli
Journal:  Trends Genet       Date:  2011-01-07       Impact factor: 11.639

9.  Respiratory syncytial virus in early life and risk of wheeze and allergy by age 13 years.

Authors:  R T Stein; D Sherrill; W J Morgan; C J Holberg; M Halonen; L M Taussig; A L Wright; F D Martinez
Journal:  Lancet       Date:  1999-08-14       Impact factor: 79.321

10.  Rhinovirus-induced wheezing in infancy--the first sign of childhood asthma?

Authors:  Anne Kotaniemi-Syrjänen; Raija Vainionpää; Tiina M Reijonen; Matti Waris; Kaj Korhonen; Matti Korppi
Journal:  J Allergy Clin Immunol       Date:  2003-01       Impact factor: 10.793

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  26 in total

1.  The neonatal methylome as a gatekeeper in the trajectory to childhood asthma.

Authors:  Avery DeVries; Donata Vercelli
Journal:  Epigenomics       Date:  2017-03-21       Impact factor: 4.778

2.  The SETDB2 locus: evidence for a genetic link between handedness and atopic disease.

Authors:  Bernard Crespi; Silven Read; Peter Hurd
Journal:  Heredity (Edinb)       Date:  2017-11-10       Impact factor: 3.821

Review 3.  Are We Meeting the Promise of Endotypes and Precision Medicine in Asthma?

Authors:  Anuradha Ray; Matthew Camiolo; Anne Fitzpatrick; Marc Gauthier; Sally E Wenzel
Journal:  Physiol Rev       Date:  2020-01-09       Impact factor: 37.312

Review 4.  Etiology of epithelial barrier dysfunction in patients with type 2 inflammatory diseases.

Authors:  Robert P Schleimer; Sergejs Berdnikovs
Journal:  J Allergy Clin Immunol       Date:  2017-06       Impact factor: 10.793

5.  A polygenic risk score for asthma in a large racially diverse population.

Authors:  Joanne E Sordillo; Sharon M Lutz; Eric Jorgenson; Carlos Iribarren; Michael McGeachie; Amber Dahlin; Kelan Tantisira; Rachel Kelly; Jessica Lasky-Su; Phuwanat Sakornsakolpat; Matthew Moll; Michael H Cho; Ann Chen Wu
Journal:  Clin Exp Allergy       Date:  2021-09-05       Impact factor: 5.018

6.  Genetics of Asthma and Allergic Diseases.

Authors:  Sadia Haider; Angela Simpson; Adnan Custovic
Journal:  Handb Exp Pharmacol       Date:  2022

7.  Inducible expression quantitative trait locus analysis of the MUC5AC gene in asthma in urban populations of children.

Authors:  Matthew C Altman; Kaitlin Flynn; Mario G Rosasco; Matthew Dapas; Meyer Kattan; Stephanie Lovinsky-Desir; George T O'Connor; Michelle A Gill; Rebecca S Gruchalla; Andrew H Liu; Jacqueline A Pongracic; Gurjit K Khurana Hershey; Edward M Zoratti; Stephen J Teach; Deepa Rastrogi; Robert A Wood; Leonard B Bacharier; Petra LeBeau; Peter J Gergen; Alkis Togias; William W Busse; Scott Presnell; James E Gern; Carole Ober; Daniel J Jackson
Journal:  J Allergy Clin Immunol       Date:  2021-05-18       Impact factor: 10.793

8.  SIGNAL: A web-based iterative analysis platform integrating pathway and network approaches optimizes hit selection from genome-scale assays.

Authors:  Samuel Katz; Jian Song; Kyle P Webb; Nicolas W Lounsbury; Clare E Bryant; Iain D C Fraser
Journal:  Cell Syst       Date:  2021-03-24       Impact factor: 11.091

9.  Coupling of spatial and directional functional network connectivity reveals a physiological basis for salience network hubs in asthma.

Authors:  Yuqun Zhang; Yuan Yang; Xiaomin Xu; Yonggui Yuan
Journal:  Brain Imaging Behav       Date:  2021-07-21       Impact factor: 3.978

Review 10.  Exploring the evidence for epigenetic regulation of environmental influences on child health across generations.

Authors:  Carrie V Breton; Remy Landon; Linda G Kahn; Michelle Bosquet Enlow; Alicia K Peterson; Theresa Bastain; Joseph Braun; Sarah S Comstock; Cristiane S Duarte; Alison Hipwell; Hong Ji; Janine M LaSalle; Rachel L Miller; Rashelle Musci; Jonathan Posner; Rebecca Schmidt; Shakira F Suglia; Irene Tung; Daniel Weisenberger; Yeyi Zhu; Rebecca Fry
Journal:  Commun Biol       Date:  2021-06-22
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