Literature DB >> 19578367

Genome-wide association study identifies five susceptibility loci for glioma.

Sanjay Shete1, Fay J Hosking, Lindsay B Robertson, Sara E Dobbins, Marc Sanson, Beatrice Malmer, Matthias Simon, Yannick Marie, Blandine Boisselier, Jean-Yves Delattre, Khe Hoang-Xuan, Soufiane El Hallani, Ahmed Idbaih, Diana Zelenika, Ulrika Andersson, Roger Henriksson, A Tommy Bergenheim, Maria Feychting, Stefan Lönn, Anders Ahlbom, Johannes Schramm, Michael Linnebank, Kari Hemminki, Rajiv Kumar, Sarah J Hepworth, Amy Price, Georgina Armstrong, Yanhong Liu, Xiangjun Gu, Robert Yu, Ching Lau, Minouk Schoemaker, Kenneth Muir, Anthony Swerdlow, Mark Lathrop, Melissa Bondy, Richard S Houlston.   

Abstract

To identify risk variants for glioma, we conducted a meta-analysis of two genome-wide association studies by genotyping 550K tagging SNPs in a total of 1,878 cases and 3,670 controls, with validation in three additional independent series totaling 2,545 cases and 2,953 controls. We identified five risk loci for glioma at 5p15.33 (rs2736100, TERT; P = 1.50 x 10(-17)), 8q24.21 (rs4295627, CCDC26; P = 2.34 x 10(-18)), 9p21.3 (rs4977756, CDKN2A-CDKN2B; P = 7.24 x 10(-15)), 20q13.33 (rs6010620, RTEL1; P = 2.52 x 10(-12)) and 11q23.3 (rs498872, PHLDB1; P = 1.07 x 10(-8)). These data show that common low-penetrance susceptibility alleles contribute to the risk of developing glioma and provide insight into disease causation of this primary brain tumor.

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Year:  2009        PMID: 19578367      PMCID: PMC4501476          DOI: 10.1038/ng.407

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  37 in total

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Journal:  Science       Date:  2008-09-04       Impact factor: 47.728

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  418 in total

1.  Survey of familial glioma and role of germline p16INK4A/p14ARF and p53 mutation.

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6.  Using Ascertainment for Targeted Resequencing to Increase Power to Identify Causal Variants.

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7.  Distribution of allele frequencies and effect sizes and their interrelationships for common genetic susceptibility variants.

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8.  Association of BCL2-938C>A genetic polymorphism with glioma risk in Chinese Han population.

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9.  Germline mutations of regulator of telomere elongation helicase 1, RTEL1, in Dyskeratosis congenita.

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Journal:  Hum Genet       Date:  2013-01-18       Impact factor: 4.132

10.  A functional polymorphism in XRCC1 is associated with glioma risk: evidence from a meta-analysis.

Authors:  Xiangtai Wei; Duo Chen; Tao Lv
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