Literature DB >> 19627094

Dependence of the AmII'p proline Raman band on peptide conformation.

Zeeshan Ahmed1, Nataliya S Myshakina, Sanford A Asher.   

Abstract

We utilized UV resonance Raman (UVRR) measurements and density functional theory (DFT) calculations to relate the AmII'p frequency to the psi angle. The AmII'p frequency shifts by approximately 25 cm(-1) as the psi angle is varied over allowed angles of the Pro peptide bond. The AmII'p frequency does not show any significant dependence on the phi dihedral angle. The conformation sensitivity of the AmII'p frequency derives from conformation-induced changes in the planarity of the Pro peptide bond; psi angle changes push the amide nitrogen out of the peptide bond plane. We use this AmII'p frequency dependence on the psi angle to track temperature-induced conformation changes in a polyproline peptide. The temperature-induced 7 cm(-1) downshift in the AmII'p frequency of the polyproline peptide results from an approximately 45 degrees rotation of the psi dihedral angle from psi = 145 degrees (ideal PPII conformation) to psi = 100 degrees (collapsed PPII conformation).

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19627094      PMCID: PMC2742972          DOI: 10.1021/jp809857y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  45 in total

Review 1.  The hunchback and its neighbours: proline as an environmental modulator.

Authors:  H Reiersen; A R Rees
Journal:  Trends Biochem Sci       Date:  2001-11       Impact factor: 13.807

2.  Left-handed polyproline II helix formation is (very) locally driven.

Authors:  T P Creamer
Journal:  Proteins       Date:  1998-11-01

3.  The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides.

Authors:  C Grathwohl; K Wüthrich
Journal:  Biopolymers       Date:  1976-10       Impact factor: 2.505

4.  Deviations from planarity of the peptide bond in peptides and proteins.

Authors:  M W MacArthur; J M Thornton
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

5.  Ultraviolet resonance Raman spectroscopy of biopolymers.

Authors:  B Hudson; L Mayne
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

6.  Proline-induced constraints in alpha-helices.

Authors:  L Piela; G Némethy; H A Scheraga
Journal:  Biopolymers       Date:  1987-09       Impact factor: 2.505

7.  Need for nonplanar peptide units in polypeptide chains.

Authors:  G N Ramachandran
Journal:  Biopolymers       Date:  1968-10       Impact factor: 2.505

8.  Raman spectroscopy of proline oligomers and poly-L-proline.

Authors:  W B Rippon; J L Koenig; A G Walton
Journal:  J Am Chem Soc       Date:  1970-12-16       Impact factor: 15.419

9.  Synthetic fragments and analogues of elastin. II. Conformational studies.

Authors:  A M Tamburro; V Guantieri; L Pandolfo; A Scopa
Journal:  Biopolymers       Date:  1990 Mar-Apr       Impact factor: 2.505

10.  Conformations of proline residues in membrane environments.

Authors:  C M Deber; M Glibowicka; G A Woolley
Journal:  Biopolymers       Date:  1990-01       Impact factor: 2.505

View more
  4 in total

1.  DFT and MP2 investigations of L-proline and its hydrated complexes.

Authors:  Xiao-Jun Li; Zhi-Jian Zhong; Hai-Zhen Wu
Journal:  J Mol Model       Date:  2011-01-25       Impact factor: 1.810

2.  Glutamine and Asparagine Side Chain Hyperconjugation-Induced Structurally Sensitive Vibrations.

Authors:  David Punihaole; Zhenmin Hong; Ryan S Jakubek; Elizabeth M Dahlburg; Steven Geib; Sanford A Asher
Journal:  J Phys Chem B       Date:  2015-09-30       Impact factor: 2.991

3.  Direct observations of conformational distributions of intrinsically disordered p53 peptides using UV Raman and explicit solvent simulations.

Authors:  Kan Xiong; Matthew C Zwier; Nataliya S Myshakina; Virginia M Burger; Sanford A Asher; Lillian T Chong
Journal:  J Phys Chem A       Date:  2011-04-29       Impact factor: 2.781

4.  Spectroscopic and computational study of melittin, cecropin A, and the hybrid peptide CM15.

Authors:  Diana E Schlamadinger; Yi Wang; J Andrew McCammon; Judy E Kim
Journal:  J Phys Chem B       Date:  2012-07-30       Impact factor: 2.991

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.