Literature DB >> 21216913

Thermodynamics of microbial growth coupled to metabolism of glucose, ethanol, short-chain organic acids, and hydrogen.

Eric E Roden1, Qusheng Jin.   

Abstract

A literature compilation demonstrated a linear relationship between microbial growth yield and the free energy of aerobic and anaerobic (respiratory and/or fermentative) metabolism of glucose, ethanol, formate, acetate, lactate, propionate, butyrate, and H(2). This relationship provides a means to estimate growth yields for modeling microbial redox metabolism in soil and sedimentary environments.

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Year:  2011        PMID： 21216913      PMCID： PMC3067288          DOI： 10.1128/AEM.02425-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  13 in total

1.  Bioremediation. Anaerobes to the rescue.

Authors:  D R Lovley
Journal:  Science       Date:  2001-08-24       Impact factor: 47.728

2.  Evaluation of methods to predict bacterial yield using thermodynamics.

Authors:  Jeanne M VanBriesen
Journal:  Biodegradation       Date:  2002       Impact factor: 3.909

3.  Thermodynamic electron equivalents model for bacterial yield prediction: modifications and comparative evaluations.

Authors:  Perry L McCarty
Journal:  Biotechnol Bioeng       Date:  2007-06-01       Impact factor: 4.530

4.  A thermodynamically-based model for predicting microbial growth and community composition coupled to system geochemistry: Application to uranium bioreduction.

Authors:  J D Istok; M Park; M Michalsen; A M Spain; L R Krumholz; C Liu; J McKinley; P Long; E Roden; A D Peacock; B Baldwin
Journal:  J Contam Hydrol       Date:  2009-07-15       Impact factor: 3.188

5.  Intermediary metabolism of organic matter in the sediments of a eutrophic lake.

Authors:  D R Lovley; M J Klug
Journal:  Appl Environ Microbiol       Date:  1982-03       Impact factor: 4.792

Review 6.  Energetics of syntrophic cooperation in methanogenic degradation.

Authors:  B Schink
Journal:  Microbiol Mol Biol Rev       Date:  1997-06       Impact factor: 11.056

7.  Energy conservation in chemotrophic anaerobic bacteria.

Authors:  R K Thauer; K Jungermann; K Decker
Journal:  Bacteriol Rev       Date:  1977-03

8.  The maintenance energy of bacteria in growing cultures.

Authors:  S J Pirt
Journal:  Proc R Soc Lond B Biol Sci       Date:  1965-10-12

Review 9.  Dissimilatory Fe(III) and Mn(IV) reduction.

Authors:  D R Lovley
Journal:  Microbiol Rev       Date:  1991-06

10.  In search of a thermodynamic description of biomass yields for the chemotrophic growth of microorganisms.

Authors:  J J Heijnen; J P Van Dijken
Journal:  Biotechnol Bioeng       Date:  1992-04-05       Impact factor: 4.530
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  10 in total

1.  Aerobically respiring prokaryotic strains exhibit a broader temperature-pH-salinity space for cell division than anaerobically respiring and fermentative strains.

Authors:  Jesse P Harrison; Luke Dobinson; Kenneth Freeman; Ross McKenzie; Dale Wyllie; Sophie L Nixon; Charles S Cockell
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

2.  Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents.

Authors:  Daniel C Reed; John A Breier; Houshuo Jiang; Karthik Anantharaman; Christopher A Klausmeier; Brandy M Toner; Cathrine Hancock; Kevin Speer; Andreas M Thurnherr; Gregory J Dick
Journal:  ISME J       Date:  2015-02-06       Impact factor: 10.302

3.  Gene-centric approach to integrating environmental genomics and biogeochemical models.

Authors:  Daniel C Reed; Christopher K Algar; Julie A Huber; Gregory J Dick
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

4.  Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone.

Authors:  Stilianos Louca; Alyse K Hawley; Sergei Katsev; Monica Torres-Beltran; Maya P Bhatia; Sam Kheirandish; Céline C Michiels; David Capelle; Gaute Lavik; Michael Doebeli; Sean A Crowe; Steven J Hallam
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-21       Impact factor: 11.205

5.  Syntrophic pathways for microbial mercury methylation.

Authors:  Ri-Qing Yu; John R Reinfelder; Mark E Hines; Tamar Barkay
Journal:  ISME J       Date:  2018-03-29       Impact factor: 10.302

6.  Leaching of cadmium and tellurium from cadmium telluride (CdTe) thin-film solar panels under simulated landfill conditions.

Authors:  Adriana Ramos-Ruiz; Jean V Wilkening; James A Field; Reyes Sierra-Alvarez
Journal:  J Hazard Mater       Date:  2017-04-24       Impact factor: 10.588

7.  Efficient metabolic exchange and electron transfer within a syntrophic trichloroethene-degrading coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei.

Authors:  Xinwei Mao; Benoit Stenuit; Alexandra Polasko; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2015-01-09       Impact factor: 4.792

8.  Energetic scaling in microbial growth.

Authors:  Salvatore Calabrese; Arjun Chakrawal; Stefano Manzoni; Philippe Van Cappellen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

9.  Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example.

Authors:  Wilfred F M Röling; Peter M van Bodegom
Journal:  Front Microbiol       Date:  2014-03-26       Impact factor: 5.640

Review 10.  Redox-informed models of global biogeochemical cycles.

Authors:  Emily J Zakem; Martin F Polz; Michael J Follows
Journal:  Nat Commun       Date:  2020-11-10       Impact factor: 14.919
  10 in total

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