Literature DB >> 25658053

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents.

Daniel C Reed1, John A Breier2, Houshuo Jiang2, Karthik Anantharaman1, Christopher A Klausmeier3, Brandy M Toner4, Cathrine Hancock5, Kevin Speer6, Andreas M Thurnherr7, Gregory J Dick1.   

Abstract

Submarine hydrothermal vents perturb the deep-ocean microbiome by injecting reduced chemical species into the water column that act as an energy source for chemosynthetic organisms. These systems thus provide excellent natural laboratories for studying the response of microbial communities to shifts in marine geochemistry. The present study explores the processes that regulate coupled microbial-geochemical dynamics in hydrothermal plumes by means of a novel mathematical model, which combines thermodynamics, growth and reaction kinetics, and transport processes derived from a fluid dynamics model. Simulations of a plume located in the ABE vent field of the Lau basin were able to reproduce metagenomic observations well and demonstrated that the magnitude of primary production and rate of autotrophic growth are largely regulated by the energetics of metabolisms and the availability of electron donors, as opposed to kinetic parameters. Ambient seawater was the dominant source of microbes to the plume and sulphur oxidisers constituted almost 90% of the modelled community in the neutrally-buoyant plume. Data from drifters deployed in the region allowed the different time scales of metabolisms to be cast in a spatial context, which demonstrated spatial succession in the microbial community. While growth was shown to occur over distances of tens of kilometers, microbes persisted over hundreds of kilometers. Given that high-temperature hydrothermal systems are found less than 100 km apart on average, plumes may act as important vectors between different vent fields and other environments that are hospitable to similar organisms, such as oil spills and oxygen minimum zones.

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Year:  2015        PMID: 25658053      PMCID: PMC4511942          DOI: 10.1038/ismej.2015.4

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  29 in total

1.  Time-series analysis of two hydrothermal plumes at 9°50'N East Pacific Rise reveals distinct, heterogeneous bacterial populations.

Authors:  J B Sylvan; B C Pyenson; O Rouxel; C R German; K J Edwards
Journal:  Geobiology       Date:  2012-01-04       Impact factor: 4.407

2.  Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.

Authors:  G E Flores; M Shakya; J Meneghin; Z K Yang; J S Seewald; C Geoff Wheat; M Podar; A-L Reysenbach
Journal:  Geobiology       Date:  2012-03-23       Impact factor: 4.407

Review 3.  The microbial engines that drive Earth's biogeochemical cycles.

Authors:  Paul G Falkowski; Tom Fenchel; Edward F Delong
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

4.  Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade.

Authors:  Katharine T Marshall; Robert M Morris
Journal:  ISME J       Date:  2012-08-09       Impact factor: 10.302

Review 5.  Anthropogenic perturbations in marine microbial communities.

Authors:  Balbina Nogales; Mariana P Lanfranconi; Juana M Piña-Villalonga; Rafael Bosch
Journal:  FEMS Microbiol Rev       Date:  2011-03       Impact factor: 16.408

6.  Thermodynamics of microbial growth coupled to metabolism of glucose, ethanol, short-chain organic acids, and hydrogen.

Authors:  Eric E Roden; Qusheng Jin
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

7.  Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume.

Authors:  Gregory J Dick; Bradley M Tebo
Journal:  Environ Microbiol       Date:  2010-02-25       Impact factor: 5.491

8.  Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume.

Authors:  Brett J Baker; Ryan A Lesniewski; Gregory J Dick
Journal:  ISME J       Date:  2012-06-14       Impact factor: 10.302

9.  Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume.

Authors:  Michinari Sunamura; Yowsuke Higashi; Chiwaka Miyako; Jun-ichiro Ishibashi; Akihiko Maruyama
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

10.  Calculation of the relative metastabilities of proteins using the CHNOSZ software package.

Authors:  Jeffrey M Dick
Journal:  Geochem Trans       Date:  2008-10-03       Impact factor: 4.737

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  13 in total

1.  Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center.

Authors:  Karthik Anantharaman; John A Breier; Gregory J Dick
Journal:  ISME J       Date:  2015-06-05       Impact factor: 10.302

2.  Microbial ecology: Here, there and everywhere.

Authors:  Peter Girguis
Journal:  Nat Microbiol       Date:  2016-07-26       Impact factor: 17.745

3.  Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone.

Authors:  Stilianos Louca; Alyse K Hawley; Sergei Katsev; Monica Torres-Beltran; Maya P Bhatia; Sam Kheirandish; Céline C Michiels; David Capelle; Gaute Lavik; Michael Doebeli; Sean A Crowe; Steven J Hallam
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-21       Impact factor: 11.205

Review 4.  Microbial invasions in sludge anaerobic digesters.

Authors:  Nuria Fernandez-Gonzalez; G H R Braz; L Regueiro; J M Lema; M Carballa
Journal:  Appl Microbiol Biotechnol       Date:  2020-11-18       Impact factor: 4.813

Review 5.  The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally.

Authors:  Gregory J Dick
Journal:  Nat Rev Microbiol       Date:  2019-05       Impact factor: 60.633

6.  Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes.

Authors:  Bledina Dede; Christian T Hansen; Rene Neuholz; Bernhard Schnetger; Charlotte Kleint; Sharon Walker; Wolfgang Bach; Rudolf Amann; Anke Meyerdierks
Journal:  ISME J       Date:  2022-01-26       Impact factor: 11.217

Review 7.  From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality.

Authors:  Jan-Ulrich Kreft; Caroline M Plugge; Clara Prats; Johan H J Leveau; Weiwen Zhang; Ferdi L Hellweger
Journal:  Front Microbiol       Date:  2017-11-27       Impact factor: 5.640

8.  The Energetic Potential for Undiscovered Manganese Metabolisms in Nature.

Authors:  Douglas E LaRowe; Harold K Carlson; Jan P Amend
Journal:  Front Microbiol       Date:  2021-06-09       Impact factor: 5.640

9.  Does It Pay Off to Explicitly Link Functional Gene Expression to Denitrification Rates in Reaction Models?

Authors:  Anna Störiko; Holger Pagel; Adrian Mellage; Olaf A Cirpka
Journal:  Front Microbiol       Date:  2021-06-18       Impact factor: 5.640

10.  Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea.

Authors:  Meng Li; Brett J Baker; Karthik Anantharaman; Sunit Jain; John A Breier; Gregory J Dick
Journal:  Nat Commun       Date:  2015-11-17       Impact factor: 14.919

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