Literature DB >> 21205332

A clinical specimen collection and transport medium for molecular diagnostic and genomic applications.

L T Daum1, S A Worthy, K C Yim, M Nogueras, R F Schuman, Y W Choi, G W Fischer.   

Abstract

Pathogen detection and genetic characterization has dramatically changed in recent years. Clinical laboratories are transitioning from traditional culture and primer-specific sequencing to more robust and rapid nucleic acid testing such as real-time PCR and meta-genomic characterization, respectively. Specimen collection is the first step in any downstream molecular diagnostic procedure. PrimeStore Molecular Transport Medium (MTM) is an optimized blend of nucleic acid stabilizing reagents that includes a non-specific internal positive control that can be amplified using real-time RT-PCR for tracking the integrity of a specimen from the point of collection to detection. PrimeStore MTM is shown here to effectively kill pathogens, including highly pathogenic H5 influenza virus, inactivate nucleases and to protect and preserve released RNA at ambient temperature for up to 30 days for downstream real-time and traditional RT-PCR detection and genetic characterization. PrimeStore MTM is also compatible with a variety of commercial extraction kits. PrimeStore is suited for routine clinical specimens and has added utility for field collection in remote areas, triage centres, border crossings and during pandemics where cold-chain, transport, and dissemination of potentially infectious pathogens are a concern.

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Year:  2010        PMID: 21205332     DOI: 10.1017/S0950268810002384

Source DB:  PubMed          Journal:  Epidemiol Infect        ISSN: 0950-2688            Impact factor:   2.451


  17 in total

1.  Next-generation ion torrent sequencing of drug resistance mutations in Mycobacterium tuberculosis strains.

Authors:  Luke T Daum; John D Rodriguez; Sue A Worthy; Nazir A Ismail; Shaheed V Omar; Andries W Dreyer; P Bernard Fourie; Anwar A Hoosen; James P Chambers; Gerald W Fischer
Journal:  J Clin Microbiol       Date:  2012-09-12       Impact factor: 5.948

2.  Best practices for performance of real-time PCR assays in veterinary diagnostic laboratories.

Authors:  Kathy L Toohey-Kurth; Donna M Mulrooney; Susanne Hinkley; Mary Lea Killian; Janice C Pedersen; Mangkey A Bounpheng; Roman Pogranichniy; Steve Bolin; Roger Maes; Rebecca L Tallmadge; Laura B Goodman; Beate M Crossley
Journal:  J Vet Diagn Invest       Date:  2020-09-30       Impact factor: 1.279

3.  Improved Detection by Next-Generation Sequencing of Pyrazinamide Resistance in Mycobacterium tuberculosis Isolates.

Authors:  Nontuthuko E Maningi; Luke T Daum; John D Rodriguez; Matsie Mphahlele; Remco P H Peters; Gerald W Fischer; James P Chambers; P Bernard Fourie
Journal:  J Clin Microbiol       Date:  2015-09-16       Impact factor: 5.948

4.  Rapid and low-cost sampling for detection of airborne SARS-CoV-2 in dehumidifier condensate.

Authors:  Parikshit Moitra; Maha Alafeef; Ketan Dighe; Priyanka Ray; James Chang; Aaron Thole; Benjamin Punshon-Smith; Michael Tolosa; Sai Sathish Ramamurthy; Xudong Ge; Douglas D Frey; Dipanjan Pan; Govind Rao
Journal:  Biotechnol Bioeng       Date:  2021-05-15       Impact factor: 4.395

5.  Use of guanidine thiocyanate-based nucleic acid extraction buffers to inactivate poliovirus in potentially infectious materials.

Authors:  Michelle J Honeywood; Stacey Jeffries-Miles; Kimberly Wong; Chelsea Harrington; Cara C Burns; M Steven Oberste; Michael D Bowen; Everardo Vega
Journal:  J Virol Methods       Date:  2021-08-09       Impact factor: 2.623

6.  Transcriptome analysis of mycobacteria in sputum samples of pulmonary tuberculosis patients.

Authors:  Sumedha Sharma; Michelle B Ryndak; Ashutosh N Aggarwal; Rakesh Yadav; Sunil Sethi; Shet Masih; Suman Laal; Indu Verma
Journal:  PLoS One       Date:  2017-03-10       Impact factor: 3.240

7.  Impact of sampling and storage stress on the recovery of airborne SARS-CoV-2 virus surrogate captured by filtration.

Authors:  Nirmala T Myers; Taewon T Han; Mei-Ling Li; Gary Brewer; Martin Harper; Gediminas Mainelis
Journal:  J Occup Environ Hyg       Date:  2021-08-17       Impact factor: 3.359

8.  It is health that is real wealth & not pieces of gold & silver.

Authors:  Akos Somoskovi; Sevim Ahmedov; Max Salfinger
Journal:  Indian J Med Res       Date:  2013-03       Impact factor: 2.375

9.  Comparison of a new transport medium with universal transport medium at a tropical field site.

Authors:  Elizabeth P Schlaudecker; Joan P Heck; Elizabeth T MacIntyre; Ruben Martinez; Caitlin N Dodd; Monica M McNeal; Mary A Staat; Jeffery E Heck; Mark C Steinhoff
Journal:  Diagn Microbiol Infect Dis       Date:  2014-05-21       Impact factor: 2.803

10.  Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens.

Authors:  Shantelle Claassen-Weitz; Sugnet Gardner-Lubbe; Kilaza S Mwaikono; Elloise du Toit; Heather J Zar; Mark P Nicol
Journal:  BMC Microbiol       Date:  2020-05-12       Impact factor: 3.605

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