Literature DB >> 21203957

How to make a minimal genome for synthetic minimal cell.

Liu-Yan Zhang1, Su-Hua Chang, Jing Wang.   

Abstract

As a key focus of synthetic biology, building a minimal artificial cell has given rise to many discussions. A synthetic minimal cell will provide an appropriate chassis to integrate functional synthetic parts, devices and systems with functions that cannot generally be found in nature. The design and construction of a functional minimal genome is a key step while building such a cell/chassis since all the cell functions can be traced back to the genome. Kinds of approaches, based on bioinformatics and molecular biology, have been developed and proceeded to derive essential genes and minimal gene sets for the synthetic minimal genome. Experiments about streamlining genomes of model bacteria revealed genome reduction led to unanticipated beneficial properties, such as high electroporation efficiency and accurate propagation of recombinant genes and plasmids that were unstable in other strains. Recent achievements in chemical synthesis technology for large DNA segments together with the rapid development of the whole-genome sequencing, have transferred synthesis of genes to assembly of the whole genomes based on oligonucleotides, and thus created strong preconditions for synthesis of artificial minimal genome. Here in this article, we review briefly the history and current state of research in this field and summarize the main methods for making a minimal genome. We also discuss the impacts of minimized genome on metabolism and regulation of artificial cell.

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Year:  2010        PMID: 21203957      PMCID: PMC4875141          DOI: 10.1007/s13238-010-0064-4

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  57 in total

1.  Unlocking the secrets of another minimal genome.

Authors: 
Journal:  Trends Microbiol       Date:  2000-12-01       Impact factor: 17.079

2.  Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA.

Authors:  Y Ji; B Zhang; S F Van; P Warren; G Woodnutt; M K Burnham; M Rosenberg
Journal:  Science       Date:  2001-09-21       Impact factor: 47.728

3.  Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural template.

Authors:  Jeronimo Cello; Aniko V Paul; Eckard Wimmer
Journal:  Science       Date:  2002-07-11       Impact factor: 47.728

Review 4.  The microbial pan-genome.

Authors:  Duccio Medini; Claudio Donati; Hervé Tettelin; Vega Masignani; Rino Rappuoli
Journal:  Curr Opin Genet Dev       Date:  2005-09-26       Impact factor: 5.578

5.  How essential are nonessential genes?

Authors:  Gang Fang; Eduardo Rocha; Antoine Danchin
Journal:  Mol Biol Evol       Date:  2005-07-13       Impact factor: 16.240

Review 6.  Systematic genome reductions: theoretical and experimental approaches.

Authors:  Tamas Fehér; Balazs Papp; Csaba Pal; György Pósfai
Journal:  Chem Rev       Date:  2007-07-18       Impact factor: 60.622

7.  Large-scale transposon mutagenesis of Mycoplasma pulmonis.

Authors:  Christopher T French; Ping Lao; Ann E Loraine; Brian T Matthews; Huilan Yu; Kevin Dybvig
Journal:  Mol Microbiol       Date:  2008-04-28       Impact factor: 3.501

8.  A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate.

Authors:  Larry A Gallagher; Elizabeth Ramage; Michael A Jacobs; Rajinder Kaul; Mitchell Brittnacher; Colin Manoil
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

9.  A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

Authors:  Véronique de Berardinis; David Vallenet; Vanina Castelli; Marielle Besnard; Agnès Pinet; Corinne Cruaud; Sumitta Samair; Christophe Lechaplais; Gabor Gyapay; Céline Richez; Maxime Durot; Annett Kreimeyer; François Le Fèvre; Vincent Schächter; Valérie Pezo; Volker Döring; Claude Scarpelli; Claudine Médigue; Georges N Cohen; Philippe Marlière; Marcel Salanoubat; Jean Weissenbach
Journal:  Mol Syst Biol       Date:  2008-03-04       Impact factor: 11.429

10.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

Authors:  Konstantinos Liolios; Konstantinos Mavromatis; Nektarios Tavernarakis; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2007-11-02       Impact factor: 16.971

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  2 in total

Review 1.  Realizing Microbial Evolution.

Authors:  Howard Ochman
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-05-02       Impact factor: 10.005

2.  Efficient Large-Scale and Scarless Genome Engineering Enables the Construction and Screening of Bacillus subtilis Biofuel Overproducers.

Authors:  Jiheng Tian; Baowen Xing; Mengyuan Li; Changgeng Xu; Yi-Xin Huo; Shuyuan Guo
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

  2 in total

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