Literature DB >> 16185861

The microbial pan-genome.

Duccio Medini1, Claudio Donati, Hervé Tettelin, Vega Masignani, Rino Rappuoli.   

Abstract

A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains. Mathematical modeling predicts that new genes will be discovered even after sequencing hundreds of genomes per species. Therefore, a bacterial species can be described by its pan-genome, which is composed of a "core genome" containing genes present in all strains, and a "dispensable genome" containing genes present in two or more strains and genes unique to single strains. Given that the number of unique genes is vast, the pan-genome of a bacterial species might be orders of magnitude larger than any single genome.

Mesh:

Year:  2005        PMID: 16185861     DOI: 10.1016/j.gde.2005.09.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  439 in total

1.  Genomewide analysis of divergence of antibiotic resistance determinants in closely related isolates of Acinetobacter baumannii.

Authors:  Mark D Adams; E Ricky Chan; Neil D Molyneaux; Robert A Bonomo
Journal:  Antimicrob Agents Chemother       Date:  2010-06-07       Impact factor: 5.191

2.  The advantages and disadvantages of horizontal gene transfer and the emergence of the first species.

Authors:  Aaron A Vogan; Paul G Higgs
Journal:  Biol Direct       Date:  2011-01-03       Impact factor: 4.540

Review 3.  How to make a minimal genome for synthetic minimal cell.

Authors:  Liu-Yan Zhang; Su-Hua Chang; Jing Wang
Journal:  Protein Cell       Date:  2010-06-04       Impact factor: 14.870

4.  Harnessing the power of genomics and immunoinformatics to produce improved vaccines.

Authors:  Leonard Moise; Leslie Cousens; Joanna Fueyo; Anne S De Groot
Journal:  Expert Opin Drug Discov       Date:  2010-12-01       Impact factor: 6.098

5.  Rebooting the genome: The role of negative feedback in horizontal gene transfer.

Authors:  Raul Fernandez-Lopez; Fernando de la Cruz
Journal:  Mob Genet Elements       Date:  2015-02-23

6.  Irrigation water quality and the benefits of implementing good agricultural practices during tomato (Lycopersicum esculentum) production.

Authors:  M Estrada-Acosta; M Jiménez; C Chaidez; J León-Félix; N Castro-Del Campo
Journal:  Environ Monit Assess       Date:  2014-03-31       Impact factor: 2.513

Review 7.  Population Biology and Comparative Genomics of Campylobacter Species.

Authors:  Lennard Epping; Esther-Maria Antão; Torsten Semmler
Journal:  Curr Top Microbiol Immunol       Date:  2021       Impact factor: 4.291

8.  Genomic Comparisons of Lactobacillus crispatus and Lactobacillus iners Reveal Potential Ecological Drivers of Community Composition in the Vagina.

Authors:  Michael T France; Helena Mendes-Soares; Larry J Forney
Journal:  Appl Environ Microbiol       Date:  2016-11-21       Impact factor: 4.792

9.  Vaccine assembly from surface proteins of Staphylococcus aureus.

Authors:  Yukiko K Stranger-Jones; Taeok Bae; Olaf Schneewind
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

10.  Comparative genomic analysis reveals metabolic diversity of different Paenibacillus groups.

Authors:  Wen-Cong Huang; Yilun Hu; Gengxin Zhang; Meng Li
Journal:  Appl Microbiol Biotechnol       Date:  2020-10-31       Impact factor: 4.813

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