Literature DB >> 21203273

8-Methyl-4-morpholinoethyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Mehmet Akkurt, Serife Pınar Yalçın, Nalan Terzioğlu Klip, Orhan Büyükgüngör.   

Abstract

In the title compound, C(15)H(26)N(2)O(2)S, the cyclo-hexane and morpholine rings adopt chair conformations, while the thia-zole ring has a twist conformation. An intra-molecular C-H⋯S hydrogen-bond inter-action forms a five-membered ring. The crystal packing involves C-H⋯O=C inter-molecular inter-actions where carbonyl O atoms act as double acceptors to two symmetrically related H atoms.

Entities:  

Year:  2008        PMID: 21203273      PMCID: PMC2962192          DOI: 10.1107/S1600536808022459

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Andres et al. (2000 ▶); Vicini et al. (2006 ▶); Küçükgüzel et al. (2002 ▶); Barreca et al. (2001 ▶); Rao et al. (2004 ▶); Gududuru et al. (2004 ▶). For related literature, see: Akkurt et al. (2007 ▶, 2008 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring conformation puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H26N2O2S M = 298.45 Triclinic, a = 7.8629 (4) Å b = 10.5239 (6) Å c = 10.8252 (6) Å α = 94.974 (5)° β = 106.378 (5)° γ = 107.169 (4)° V = 806.89 (8) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.72 × 0.64 × 0.58 mm

Data collection

Stoe IPDS-2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.867, T max = 0.891 17959 measured reflections 3253 independent reflections 2948 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.07 3253 reflections 181 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.18 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022459/kp2183sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022459/kp2183Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H26N2O2SZ = 2
Mr = 298.45F000 = 324
Triclinic, P1Dx = 1.228 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.8629 (4) ÅCell parameters from 29201 reflections
b = 10.5239 (6) Åθ = 2.0–28.0º
c = 10.8252 (6) ŵ = 0.20 mm1
α = 94.974 (5)ºT = 296 K
β = 106.378 (5)ºBlock, colourless
γ = 107.169 (4)º0.72 × 0.64 × 0.58 mm
V = 806.89 (8) Å3
Stoe IPDS-2 diffractometer3253 independent reflections
Monochromator: plane graphite2948 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1Rint = 0.034
T = 296 Kθmax = 26.5º
ω scansθmin = 2.9º
Absorption correction: integration(X-RED32; Stoe & Cie, 2002)h = −9→9
Tmin = 0.867, Tmax = 0.891k = −13→13
17959 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.127  w = 1/[σ2(Fo2) + (0.07P)2 + 0.1465P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3253 reflectionsΔρmax = 0.72 e Å3
181 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.34108 (6)0.16629 (5)0.79000 (5)0.0644 (2)
O10.4404 (2)0.54993 (14)0.84353 (15)0.0737 (5)
O21.1634 (2)0.77257 (19)0.54682 (15)0.0857 (6)
N10.58740 (18)0.40139 (13)0.80741 (13)0.0476 (4)
N20.88645 (18)0.65537 (12)0.66493 (12)0.0465 (4)
C10.2920 (3)0.3148 (2)0.8397 (2)0.0649 (6)
C20.4460 (2)0.43541 (18)0.83066 (16)0.0545 (5)
C30.5878 (2)0.26243 (15)0.81122 (14)0.0444 (4)
C40.6416 (3)0.20501 (17)0.69912 (16)0.0541 (5)
C50.6455 (3)0.06167 (18)0.70696 (18)0.0623 (6)
C60.7743 (3)0.05266 (18)0.83773 (19)0.0592 (6)
C70.7230 (3)0.11180 (19)0.94940 (18)0.0587 (6)
C80.7174 (2)0.25365 (17)0.94280 (15)0.0522 (5)
C90.7691 (4)−0.0928 (2)0.8470 (3)0.0830 (8)
C100.7529 (2)0.50806 (16)0.80326 (15)0.0506 (5)
C110.7251 (2)0.54594 (17)0.66860 (16)0.0530 (5)
C120.8409 (3)0.7076 (2)0.54383 (18)0.0651 (6)
C131.0103 (3)0.8188 (2)0.5390 (2)0.0794 (7)
C141.2124 (3)0.7255 (3)0.6657 (2)0.0766 (7)
C151.0497 (2)0.61291 (18)0.67652 (17)0.0557 (5)
H1A0.170900.312700.782800.0780*
H1B0.288900.319600.928900.0780*
H4A0.764600.263200.702100.0650*
H4B0.551700.204000.616200.0650*
H5A0.518900.001600.693200.0750*
H5B0.687200.031100.637300.0750*
H60.903300.107100.846300.0710*
H7A0.600700.053500.947700.0700*
H7B0.814000.113301.031900.0700*
H8A0.843700.314600.957100.0630*
H8B0.674500.283001.012400.0630*
H9A0.80140−0.129100.775700.1240*
H9B0.64500−0.147300.842600.1240*
H9C0.85780−0.093300.928600.1240*
H10A0.860800.477600.826500.0610*
H10B0.778800.587500.867400.0610*
H11A0.703600.467300.605000.0640*
H11B0.614400.573100.644000.0640*
H12A0.738400.742500.538700.0780*
H12B0.800400.634900.469300.0780*
H13A0.977700.852300.458000.0950*
H13B1.046700.893100.611200.0950*
H14A1.252300.799800.738600.0920*
H14B1.317200.693200.670900.0920*
H15A1.016600.535600.608000.0670*
H15B1.086900.585100.760300.0670*
U11U22U33U12U13U23
S10.0449 (2)0.0547 (3)0.0893 (4)0.0085 (2)0.0219 (2)0.0200 (2)
O10.0760 (9)0.0646 (8)0.0894 (10)0.0368 (7)0.0264 (7)0.0132 (7)
O20.0795 (10)0.1059 (12)0.0718 (9)0.0147 (9)0.0356 (7)0.0365 (8)
N10.0443 (6)0.0453 (7)0.0529 (7)0.0129 (5)0.0164 (5)0.0124 (5)
N20.0477 (7)0.0418 (6)0.0465 (6)0.0119 (5)0.0119 (5)0.0127 (5)
C10.0485 (9)0.0746 (12)0.0754 (11)0.0193 (8)0.0279 (8)0.0109 (9)
C20.0518 (9)0.0593 (9)0.0547 (9)0.0230 (7)0.0163 (7)0.0099 (7)
C30.0415 (7)0.0446 (7)0.0468 (7)0.0117 (6)0.0157 (6)0.0125 (6)
C40.0645 (10)0.0536 (9)0.0460 (8)0.0185 (7)0.0209 (7)0.0120 (6)
C50.0723 (11)0.0540 (9)0.0631 (10)0.0207 (8)0.0271 (8)0.0071 (8)
C60.0532 (9)0.0524 (9)0.0770 (11)0.0196 (7)0.0253 (8)0.0165 (8)
C70.0599 (10)0.0663 (10)0.0602 (9)0.0279 (8)0.0232 (8)0.0271 (8)
C80.0536 (8)0.0607 (9)0.0441 (8)0.0218 (7)0.0148 (6)0.0120 (6)
C90.0817 (14)0.0599 (11)0.1133 (18)0.0334 (10)0.0288 (13)0.0205 (11)
C100.0473 (8)0.0470 (8)0.0501 (8)0.0080 (6)0.0123 (6)0.0111 (6)
C110.0459 (8)0.0524 (8)0.0527 (8)0.0094 (7)0.0093 (6)0.0161 (7)
C120.0649 (10)0.0618 (10)0.0595 (10)0.0137 (8)0.0098 (8)0.0269 (8)
C130.0898 (15)0.0634 (11)0.0663 (11)0.0041 (10)0.0140 (10)0.0316 (9)
C140.0559 (10)0.0968 (15)0.0778 (13)0.0158 (10)0.0280 (9)0.0329 (11)
C150.0560 (9)0.0602 (9)0.0552 (9)0.0210 (7)0.0214 (7)0.0161 (7)
S1—C11.791 (2)C4—H4A0.9700
S1—C31.8410 (17)C4—H4B0.9700
O1—C21.216 (2)C5—H5A0.9700
O2—C131.410 (3)C5—H5B0.9700
O2—C141.412 (3)C6—H60.9800
N1—C21.343 (2)C7—H7A0.9700
N1—C31.468 (2)C7—H7B0.9700
N1—C101.461 (2)C8—H8A0.9700
N2—C111.453 (2)C8—H8B0.9700
N2—C121.458 (2)C9—H9A0.9600
N2—C151.456 (2)C9—H9B0.9600
C1—C21.506 (3)C9—H9C0.9600
C3—C41.526 (3)C10—H10A0.9700
C3—C81.528 (2)C10—H10B0.9700
C4—C51.527 (3)C11—H11A0.9700
C5—C61.520 (3)C11—H11B0.9700
C6—C71.518 (3)C12—H12A0.9700
C6—C91.532 (3)C12—H12B0.9700
C7—C81.514 (3)C13—H13A0.9700
C10—C111.518 (2)C13—H13B0.9700
C12—C131.509 (3)C14—H14A0.9700
C14—C151.506 (3)C14—H14B0.9700
C1—H1A0.9700C15—H15A0.9700
C1—H1B0.9700C15—H15B0.9700
S1···N12.6062 (15)H5B···H9A2.5400
S1···H5A2.8300H7A···S12.8800
S1···H7A2.8800H7A···H9B2.4700
S1···H13Bi3.1500H7A···H7Aviii2.2900
S1···H13Aii3.0600H7B···H9C2.5200
O1···C113.321 (2)H7B···H9Cix2.5700
O1···C14iii3.311 (3)H8A···C102.8600
O1···C15iii3.380 (2)H8A···H10A2.3100
O1···C1iv3.395 (3)H8B···O1iv2.7600
O1···C2iv3.363 (2)H9A···N2x2.8100
O2···N22.856 (2)H9A···C12x3.0600
O2···C4v3.419 (3)H9A···H5B2.5400
O1···H10B2.5100H9B···H5A2.5500
O1···H15Biii2.8200H9B···H7A2.4700
O1···H1Biv2.6900H9C···H7B2.5200
O1···H8Biv2.7600H9C···H7Bix2.5700
O1···H11B2.8600H9C···H9Cix2.4900
O1···H14Biii2.6500H10A···C42.8600
N1···S12.6062 (15)H10A···C82.8600
N2···O22.856 (2)H10A···C152.7200
N2···H9Avi2.8100H10A···H4A2.3200
C1···O1iv3.395 (3)H10A···H8A2.3100
C2···O1iv3.363 (2)H10A···H15B2.1500
C2···C2iv3.565 (2)H10B···O12.5100
C4···C113.514 (2)H10B···H1Biv2.5900
C4···O2v3.419 (3)H11A···C42.9800
C11···O13.321 (2)H11A···H4A2.5800
C11···C43.514 (2)H11A···H12B2.4800
C14···O1vii3.311 (3)H11A···H15A2.3400
C15···O1vii3.380 (2)H11B···O12.8600
C2···H11B2.9700H11B···C22.9700
C4···H11A2.9800H11B···H12A2.3200
C4···H10A2.8600H12A···H11B2.3200
C8···H10A2.8600H12B···H11A2.4800
C10···H15B2.7000H12B···H15A2.4700
C10···H8A2.8600H13A···S1ii3.0600
C10···H4A2.7500H13B···S1xi3.1500
C12···H9Avi3.0600H13B···C153.1000
C15···H10A2.7200H13B···H14A2.3200
C15···H13B3.1000H14A···H13B2.3200
H1B···O1iv2.6900H14B···O1vii2.6500
H1B···H10Biv2.5900H15A···H11A2.3400
H4A···C102.7500H15A···H12B2.4700
H4A···H10A2.3200H15A···H15Av2.3100
H4A···H11A2.5800H15B···O1vii2.8200
H5A···S12.8300H15B···C102.7000
H5A···H9B2.5500H15B···H10A2.1500
C1—S1—C392.98 (9)C9—C6—H6108.00
C13—O2—C14109.27 (17)C6—C7—H7A109.00
C2—N1—C3118.93 (14)C6—C7—H7B109.00
C2—N1—C10119.11 (14)C8—C7—H7A109.00
C3—N1—C10120.98 (14)C8—C7—H7B109.00
C11—N2—C12110.57 (14)H7A—C7—H7B108.00
C11—N2—C15112.08 (13)C3—C8—H8A109.00
C12—N2—C15109.11 (15)C3—C8—H8B109.00
S1—C1—C2107.46 (16)C7—C8—H8A109.00
O1—C2—N1124.77 (17)C7—C8—H8B109.00
O1—C2—C1122.89 (18)H8A—C8—H8B108.00
N1—C2—C1112.34 (16)C6—C9—H9A110.00
S1—C3—N1103.37 (11)C6—C9—H9B109.00
S1—C3—C4108.79 (12)C6—C9—H9C109.00
S1—C3—C8110.62 (11)H9A—C9—H9B109.00
N1—C3—C4112.65 (13)H9A—C9—H9C109.00
N1—C3—C8111.03 (12)H9B—C9—H9C109.00
C4—C3—C8110.18 (14)N1—C10—H10A109.00
C3—C4—C5111.69 (15)N1—C10—H10B109.00
C4—C5—C6112.69 (15)C11—C10—H10A109.00
C5—C6—C7110.18 (19)C11—C10—H10B109.00
C5—C6—C9112.17 (18)H10A—C10—H10B108.00
C7—C6—C9110.37 (18)N2—C11—H11A109.00
C6—C7—C8113.08 (15)N2—C11—H11B109.00
C3—C8—C7112.40 (14)C10—C11—H11A109.00
N1—C10—C11111.79 (13)C10—C11—H11B109.00
N2—C11—C10112.12 (13)H11A—C11—H11B108.00
N2—C12—C13110.35 (17)N2—C12—H12A110.00
O2—C13—C12111.52 (18)N2—C12—H12B110.00
O2—C14—C15111.56 (18)C13—C12—H12A110.00
N2—C15—C14111.32 (17)C13—C12—H12B110.00
S1—C1—H1A110.00H12A—C12—H12B108.00
S1—C1—H1B110.00O2—C13—H13A109.00
C2—C1—H1A110.00O2—C13—H13B109.00
C2—C1—H1B110.00C12—C13—H13A109.00
H1A—C1—H1B109.00C12—C13—H13B109.00
C3—C4—H4A109.00H13A—C13—H13B108.00
C3—C4—H4B109.00O2—C14—H14A109.00
C5—C4—H4A109.00O2—C14—H14B109.00
C5—C4—H4B109.00C15—C14—H14A109.00
H4A—C4—H4B108.00C15—C14—H14B109.00
C4—C5—H5A109.00H14A—C14—H14B108.00
C4—C5—H5B109.00N2—C15—H15A109.00
C6—C5—H5A109.00N2—C15—H15B109.00
C6—C5—H5B109.00C14—C15—H15A109.00
H5A—C5—H5B108.00C14—C15—H15B109.00
C5—C6—H6108.00H15A—C15—H15B108.00
C7—C6—H6108.00
C3—S1—C1—C217.14 (14)C12—N2—C15—C1454.33 (18)
C1—S1—C3—C4−140.08 (12)C12—N2—C11—C10−168.37 (15)
C1—S1—C3—C898.77 (13)C15—N2—C12—C13−54.9 (2)
C1—S1—C3—N1−20.15 (11)S1—C1—C2—O1171.24 (15)
C13—O2—C14—C1558.7 (2)S1—C1—C2—N1−8.90 (19)
C14—O2—C13—C12−59.8 (2)N1—C3—C8—C7−179.28 (15)
C3—N1—C2—O1172.02 (16)C8—C3—C4—C554.1 (2)
C10—N1—C2—O13.3 (2)S1—C3—C8—C766.56 (17)
C10—N1—C3—C869.70 (18)N1—C3—C4—C5178.67 (16)
C2—N1—C3—C4137.07 (16)C4—C3—C8—C7−53.77 (19)
C2—N1—C3—S119.82 (16)S1—C3—C4—C5−67.33 (18)
C10—N1—C3—S1−171.66 (11)C3—C4—C5—C6−55.4 (2)
C10—N1—C2—C1−176.58 (14)C4—C5—C6—C753.7 (2)
C10—N1—C3—C4−54.41 (19)C4—C5—C6—C9177.0 (2)
C2—N1—C3—C8−98.82 (17)C5—C6—C7—C8−53.1 (2)
C3—N1—C2—C1−7.8 (2)C9—C6—C7—C8−177.6 (2)
C3—N1—C10—C11106.22 (16)C6—C7—C8—C354.4 (2)
C2—N1—C10—C11−85.28 (18)N1—C10—C11—N2177.91 (13)
C11—N2—C15—C14177.14 (14)N2—C12—C13—O259.0 (2)
C11—N2—C12—C13−178.59 (16)O2—C14—C15—N2−57.2 (2)
C15—N2—C11—C1069.65 (17)
D—H···AD—HH···AD···AD—H···A
C5—H5A···S10.972.833.217 (2)105
C14—H14B···O1vii0.972.653.311 (3)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯S10.972.833.217 (2)105
C14—H14B⋯O1i0.972.653.311 (3)126

Symmetry code: (i) .

  8 in total

1.  N-(3-Oxo-1-thia-4-aza-spiro-[4.5]dec-4-yl)-6-phenyl-imidazo[2,1-b][1,3]thia-zole-3-acetamide hemihydrate.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Nuray Ulusoy Güzeldemirci; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-10

2.  Synthesis and antimicrobial activity of novel 2-thiazolylimino-5-arylidene-4-thiazolidinones.

Authors:  Paola Vicini; Athina Geronikaki; Kitka Anastasia; Matteo Incerti; Franca Zani
Journal:  Bioorg Med Chem       Date:  2006-02-20       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis, characterisation and biological activity of novel 4-thiazolidinones, 1,3,4-oxadiazoles and some related compounds.

Authors:  S Güniz Küçükgüzel; E Elçin Oruç; Sevim Rollas; Fikrettin Sahin; Ahmet Ozbek
Journal:  Eur J Med Chem       Date:  2002-03       Impact factor: 6.514

5.  4-Thiazolidinones: novel inhibitors of the bacterial enzyme MurB.

Authors:  C J Andres; J J Bronson; S V D'Andrea; M S Deshpande; P J Falk; K A Grant-Young; W E Harte; H T Ho; P F Misco; J G Robertson; D Stock; Y Sun; A W Walsh
Journal:  Bioorg Med Chem Lett       Date:  2000-04-17       Impact factor: 2.823

6.  Discovery of 2,3-diaryl-1,3-thiazolidin-4-ones as potent anti-HIV-1 agents.

Authors:  M L Barreca; A Chimirri; L De Luca; A M Monforte; P Monforte; A Rao; M Zappalà; J Balzarini; E De Clercq; C Pannecouque; M Witvrouw
Journal:  Bioorg Med Chem Lett       Date:  2001-07-09       Impact factor: 2.823

7.  Synthesis and antiproliferative activity of 2-aryl-4-oxo-thiazolidin-3-yl-amides for prostate cancer.

Authors:  Veeresa Gududuru; Eunju Hurh; James T Dalton; Duane D Miller
Journal:  Bioorg Med Chem Lett       Date:  2004-11-01       Impact factor: 2.823

8.  2-(2,6-Dihalophenyl)-3-(pyrimidin-2-yl)-1,3-thiazolidin-4-ones as non-nucleoside HIV-1 reverse transcriptase inhibitors.

Authors:  A Rao; J Balzarini; A Carbone; A Chimirri; E De Clercq; A M Monforte; P Monforte; C Pannecouque; M Zappalà
Journal:  Antiviral Res       Date:  2004-08       Impact factor: 5.970

  8 in total
  3 in total

1.  rac-2-Hydroxy-2,8-dimethyl-4-morpho-linoethyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Nalan Terzioğlu Klip; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

2.  8-Ethyl-2-hydr-oxy-2-methyl-4-morpholinoethyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Nalan Terzioğlu Klip; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

3.  4-Benzyl-8-phenyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; Poovan Shanmugavelan; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.