Literature DB >> 21201146

8-Ethyl-2-hydr-oxy-2-methyl-4-morpholinoethyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Mehmet Akkurt, Serife Pınar Yalçın, Nalan Terzioğlu Klip, Orhan Büyükgüngör.   

Abstract

Mol-ecules of the title spiro-[4.5]decane derivative, C(17)H(30)N(2)O(3)S, are linked by paired O-H⋯N hydrogen bonds into centrosymmetric R(2) (2)(16) dimers and these dimers are linked into a three-dimensional framework structure by C-H⋯O interactions.

Entities:  

Year:  2008        PMID: 21201146      PMCID: PMC2959234          DOI: 10.1107/S1600536808029097

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the applications of thia­zolidines, see: Babaoğlu et al. (2003 ▶); Pfahl et al. (2003 ▶); Sayyed et al. (2006 ▶); Sharma et al. (2006 ▶). For related structures, see: Akkurt et al. (2007 ▶); Akkurt et al. (2008a ▶,b ▶,c ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H30N2O3S M = 342.50 Triclinic, a = 8.1878 (4) Å b = 10.2241 (5) Å c = 12.2188 (6) Å α = 79.901 (4)° β = 73.796 (4)° γ = 67.674 (4)° V = 905.83 (8) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.55 × 0.38 × 0.27 mm

Data collection

STOE IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.900, T max = 0.949 18506 measured reflections 3717 independent reflections 3297 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.092 S = 1.03 3717 reflections 208 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.16 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029097/hb2794sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029097/hb2794Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H30N2O3SZ = 2
Mr = 342.50F(000) = 372
Triclinic, P1Dx = 1.256 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1878 (4) ÅCell parameters from 28660 reflections
b = 10.2241 (5) Åθ = 2.2–27.4°
c = 12.2188 (6) ŵ = 0.20 mm1
α = 79.901 (4)°T = 296 K
β = 73.796 (4)°Block, colourless
γ = 67.674 (4)°0.55 × 0.38 × 0.27 mm
V = 905.83 (8) Å3
STOE IPDS II diffractometer3717 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3297 reflections with I > 2σ(I)
plane graphiteRint = 0.055
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.7°
ω scansh = −10→10
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −12→12
Tmin = 0.900, Tmax = 0.949l = −15→15
18506 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0459P)2 + 0.1334P] where P = (Fo2 + 2Fc2)/3
3717 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.35630 (5)0.26913 (4)0.21446 (3)0.0484 (1)
O10.18488 (14)0.24461 (12)0.54122 (9)0.0578 (4)
O20.74392 (17)0.18404 (13)0.83355 (9)0.0631 (4)
O30.08914 (13)0.18609 (10)0.34973 (9)0.0505 (3)
N10.43113 (15)0.26810 (11)0.40883 (9)0.0402 (3)
N20.68062 (14)0.09805 (10)0.64605 (9)0.0379 (3)
C10.17113 (18)0.28560 (13)0.34309 (12)0.0432 (4)
C20.26212 (18)0.26248 (13)0.44208 (11)0.0421 (4)
C30.51348 (17)0.28899 (13)0.28697 (10)0.0380 (3)
C40.5285 (2)0.43629 (13)0.25620 (12)0.0453 (4)
C50.6216 (2)0.45605 (14)0.13129 (12)0.0492 (4)
C60.80738 (19)0.34126 (15)0.09591 (12)0.0459 (4)
C70.78779 (19)0.19575 (14)0.12536 (12)0.0461 (4)
C80.70039 (18)0.17493 (13)0.25161 (11)0.0425 (4)
C90.8933 (2)0.36576 (18)−0.02995 (13)0.0564 (5)
C101.0855 (3)0.2653 (2)−0.06975 (18)0.0795 (7)
C110.52301 (19)0.26419 (13)0.49686 (11)0.0433 (4)
C120.61041 (19)0.11222 (13)0.54526 (11)0.0422 (4)
C130.53767 (18)0.14089 (15)0.74933 (11)0.0463 (4)
C140.6216 (2)0.11142 (18)0.85005 (12)0.0582 (5)
C150.8845 (2)0.14204 (18)0.73395 (14)0.0568 (5)
C160.80961 (18)0.17138 (14)0.62963 (12)0.0440 (4)
C170.0219 (2)0.43050 (16)0.34677 (16)0.0596 (5)
H30.166100.106200.348000.0760*
H4A0.407900.507700.271600.0540*
H4B0.596600.449800.304100.0540*
H5A0.636200.547800.117300.0590*
H5B0.544300.456000.083900.0590*
H60.886300.346900.140800.0550*
H7A0.714000.186300.079500.0550*
H7B0.906600.122600.106900.0550*
H8A0.778900.177400.297200.0510*
H8B0.688100.082400.267100.0510*
H9A0.818500.35680−0.075400.0680*
H9B0.893100.46220−0.044300.0680*
H10A1.086900.16960−0.058600.0950*
H10B1.161600.27450−0.026500.0950*
H10C1.130100.28800−0.149400.0950*
H11A0.436000.320100.558300.0520*
H11B0.615900.306200.464400.0520*
H12A0.521100.066000.564600.0510*
H12B0.709500.061600.485600.0510*
H13A0.455900.088700.762100.0560*
H13B0.468100.241200.740300.0560*
H14A0.526600.140800.918400.0700*
H14B0.685600.010300.861200.0700*
H15A0.952600.041500.743800.0680*
H15B0.967200.192900.723500.0680*
H16A0.749000.272600.616200.0530*
H16B0.907900.138800.563400.0530*
H17A−0.030000.447900.281900.0720*
H17B0.072000.502100.344900.0720*
H17C−0.070500.433100.415800.0720*
U11U22U33U12U13U23
S10.0492 (2)0.0609 (2)0.0430 (2)−0.0225 (2)−0.0195 (1)−0.0021 (1)
O10.0516 (6)0.0715 (7)0.0478 (6)−0.0221 (5)−0.0079 (5)−0.0035 (5)
O20.0749 (7)0.0766 (7)0.0507 (6)−0.0302 (6)−0.0222 (5)−0.0163 (5)
O30.0399 (5)0.0454 (5)0.0692 (6)−0.0137 (4)−0.0166 (5)−0.0089 (4)
N10.0419 (5)0.0422 (5)0.0398 (5)−0.0146 (4)−0.0161 (4)−0.0012 (4)
N20.0394 (5)0.0387 (5)0.0373 (5)−0.0119 (4)−0.0133 (4)−0.0046 (4)
C10.0391 (6)0.0411 (6)0.0511 (7)−0.0110 (5)−0.0166 (5)−0.0048 (5)
C20.0411 (6)0.0375 (6)0.0459 (7)−0.0094 (5)−0.0131 (5)−0.0042 (5)
C30.0402 (6)0.0366 (6)0.0392 (6)−0.0115 (5)−0.0158 (5)−0.0019 (5)
C40.0513 (7)0.0353 (6)0.0488 (7)−0.0124 (5)−0.0145 (6)−0.0040 (5)
C50.0584 (8)0.0385 (7)0.0504 (7)−0.0177 (6)−0.0146 (6)0.0020 (5)
C60.0472 (7)0.0516 (7)0.0448 (7)−0.0209 (6)−0.0153 (6)−0.0028 (5)
C70.0462 (7)0.0424 (7)0.0467 (7)−0.0100 (6)−0.0131 (6)−0.0051 (5)
C80.0428 (7)0.0362 (6)0.0467 (7)−0.0097 (5)−0.0150 (5)−0.0009 (5)
C90.0596 (9)0.0649 (9)0.0487 (8)−0.0294 (8)−0.0101 (7)−0.0015 (7)
C100.0607 (10)0.0973 (14)0.0711 (12)−0.0298 (10)0.0037 (9)−0.0090 (10)
C110.0521 (7)0.0410 (6)0.0429 (7)−0.0155 (6)−0.0216 (6)−0.0030 (5)
C120.0495 (7)0.0392 (6)0.0417 (6)−0.0123 (5)−0.0192 (6)−0.0059 (5)
C130.0437 (7)0.0516 (7)0.0431 (7)−0.0171 (6)−0.0075 (6)−0.0058 (5)
C140.0662 (9)0.0691 (10)0.0389 (7)−0.0239 (8)−0.0104 (7)−0.0058 (6)
C150.0512 (8)0.0691 (10)0.0597 (9)−0.0224 (7)−0.0249 (7)−0.0069 (7)
C160.0411 (6)0.0489 (7)0.0451 (7)−0.0175 (6)−0.0114 (5)−0.0050 (5)
C170.0541 (8)0.0448 (8)0.0783 (11)−0.0033 (6)−0.0299 (8)−0.0094 (7)
S1—C11.8347 (15)C5—H5A0.9700
S1—C31.8386 (15)C5—H5B0.9700
O1—C21.2179 (17)C6—H60.9800
O2—C141.412 (2)C7—H7A0.9700
O2—C151.420 (2)C7—H7B0.9700
O3—C11.3971 (18)C8—H8A0.9700
O3—H30.8200C8—H8B0.9700
N1—C21.350 (2)C9—H9A0.9700
N1—C111.4623 (19)C9—H9B0.9700
N1—C31.4680 (16)C10—H10A0.9600
N2—C121.4620 (18)C10—H10B0.9600
N2—C161.466 (2)C10—H10C0.9600
N2—C131.4609 (18)C11—H11A0.9700
C1—C171.519 (2)C11—H11B0.9700
C1—C21.531 (2)C12—H12A0.9700
C3—C41.5300 (18)C12—H12B0.9700
C3—C81.5299 (19)C13—H13A0.9700
C4—C51.520 (2)C13—H13B0.9700
C5—C61.527 (2)C14—H14A0.9700
C6—C91.522 (2)C14—H14B0.9700
C6—C71.526 (2)C15—H15A0.9700
C7—C81.5237 (19)C15—H15B0.9700
C9—C101.513 (3)C16—H16A0.9700
C11—C121.5314 (18)C16—H16B0.9700
C13—C141.504 (2)C17—H17A0.9600
C15—C161.501 (2)C17—H17B0.9600
C4—H4A0.9700C17—H17C0.9600
C4—H4B0.9700
C1—S1—C394.89 (6)C8—C7—H7B109.00
C14—O2—C15110.20 (12)H7A—C7—H7B108.00
C1—O3—H3109.00C3—C8—H8A109.00
C2—N1—C3120.17 (12)C3—C8—H8B109.00
C3—N1—C11121.19 (12)C7—C8—H8A109.00
C2—N1—C11118.47 (11)C7—C8—H8B109.00
C12—N2—C13113.18 (12)H8A—C8—H8B108.00
C13—N2—C16109.95 (11)C6—C9—H9A109.00
C12—N2—C16113.51 (11)C6—C9—H9B109.00
S1—C1—C2104.46 (10)C10—C9—H9A109.00
S1—C1—C17113.16 (10)C10—C9—H9B109.00
O3—C1—C2112.49 (11)H9A—C9—H9B108.00
O3—C1—C17106.76 (13)C9—C10—H10A109.00
C2—C1—C17109.29 (12)C9—C10—H10B109.00
S1—C1—O3110.80 (9)C9—C10—H10C109.00
O1—C2—N1124.16 (14)H10A—C10—H10B109.00
N1—C2—C1113.68 (11)H10A—C10—H10C109.00
O1—C2—C1122.14 (14)H10B—C10—H10C109.00
S1—C3—N1103.71 (10)N1—C11—H11A109.00
S1—C3—C4110.66 (10)N1—C11—H11B109.00
N1—C3—C4111.72 (10)C12—C11—H11A109.00
N1—C3—C8111.49 (10)C12—C11—H11B109.00
S1—C3—C8109.19 (9)H11A—C11—H11B108.00
C4—C3—C8109.91 (12)N2—C12—H12A108.00
C3—C4—C5111.93 (11)N2—C12—H12B108.00
C4—C5—C6113.29 (12)C11—C12—H12A108.00
C5—C6—C7109.26 (13)C11—C12—H12B108.00
C5—C6—C9110.96 (12)H12A—C12—H12B107.00
C7—C6—C9112.66 (12)N2—C13—H13A110.00
C6—C7—C8111.36 (11)N2—C13—H13B110.00
C3—C8—C7112.03 (11)C14—C13—H13A110.00
C6—C9—C10114.58 (14)C14—C13—H13B110.00
N1—C11—C12111.58 (11)H13A—C13—H13B108.00
N2—C12—C11115.86 (11)O2—C14—H14A109.00
N2—C13—C14109.49 (13)O2—C14—H14B109.00
O2—C14—C13111.30 (12)C13—C14—H14A109.00
O2—C15—C16111.43 (14)C13—C14—H14B109.00
N2—C16—C15109.68 (12)H14A—C14—H14B108.00
C3—C4—H4A109.00O2—C15—H15A109.00
C3—C4—H4B109.00O2—C15—H15B109.00
C5—C4—H4A109.00C16—C15—H15A109.00
C5—C4—H4B109.00C16—C15—H15B109.00
H4A—C4—H4B108.00H15A—C15—H15B108.00
C4—C5—H5A109.00N2—C16—H16A110.00
C4—C5—H5B109.00N2—C16—H16B110.00
C6—C5—H5A109.00C15—C16—H16A110.00
C6—C5—H5B109.00C15—C16—H16B110.00
H5A—C5—H5B108.00H16A—C16—H16B108.00
C5—C6—H6108.00C1—C17—H17A109.00
C7—C6—H6108.00C1—C17—H17B109.00
C9—C6—H6108.00C1—C17—H17C109.00
C6—C7—H7A109.00H17A—C17—H17B109.00
C6—C7—H7B109.00H17A—C17—H17C110.00
C8—C7—H7A109.00H17B—C17—H17C109.00
C3—S1—C1—O3−137.43 (10)C12—N2—C16—C15−175.82 (11)
C3—S1—C1—C2−16.07 (9)C17—C1—C2—O170.12 (17)
C3—S1—C1—C17102.70 (12)C17—C1—C2—N1−108.05 (14)
C1—S1—C3—N114.83 (9)S1—C1—C2—N113.31 (13)
C1—S1—C3—C4−105.10 (10)S1—C1—C2—O1−168.51 (11)
C1—S1—C3—C8133.79 (9)O3—C1—C2—N1133.56 (12)
C14—O2—C15—C1658.82 (17)O3—C1—C2—O1−48.27 (17)
C15—O2—C14—C13−59.22 (17)C4—C3—C8—C7−55.31 (15)
C11—N1—C3—C4−65.77 (16)N1—C3—C8—C7−179.75 (12)
C2—N1—C11—C1281.87 (15)S1—C3—C4—C5−67.62 (15)
C11—N1—C2—O1−5.22 (19)N1—C3—C4—C5177.37 (13)
C3—N1—C2—C1−2.34 (16)S1—C3—C8—C766.25 (13)
C2—N1—C3—C4109.35 (14)C8—C3—C4—C553.06 (16)
C3—N1—C11—C12−102.93 (14)C3—C4—C5—C6−54.41 (18)
C11—N1—C3—C857.65 (15)C4—C5—C6—C754.72 (17)
C11—N1—C2—C1172.91 (10)C4—C5—C6—C9179.53 (13)
C3—N1—C2—O1179.53 (12)C5—C6—C7—C8−55.82 (16)
C11—N1—C3—S1175.01 (9)C5—C6—C9—C10174.32 (15)
C2—N1—C3—C8−127.23 (13)C7—C6—C9—C10−62.8 (2)
C2—N1—C3—S1−9.86 (13)C9—C6—C7—C8−179.64 (13)
C13—N2—C16—C1556.27 (14)C6—C7—C8—C357.90 (17)
C12—N2—C13—C14175.30 (11)N1—C11—C12—N2−170.62 (12)
C16—N2—C13—C14−56.60 (14)N2—C13—C14—O258.47 (16)
C13—N2—C12—C1171.56 (15)O2—C15—C16—N2−57.46 (16)
C16—N2—C12—C11−54.67 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3···N2i0.821.992.7994 (14)171
C9—H9A···O2ii0.972.573.418 (2)146
C15—H15B···O1iii0.972.553.249 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N2i0.821.992.7994 (14)171
C9—H9A⋯O2ii0.972.573.418 (2)146
C15—H15B⋯O1iii0.972.553.249 (2)129

Symmetry codes: (i) ; (ii) ; (iii) .

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