Literature DB >> 22590319

4-Benzyl-8-phenyl-1-thia-4-aza-spiro-[4.5]decan-3-one.

Hoong-Kun Fun, Tze Shyang Chia, Poovan Shanmugavelan, Alagusundaram Ponnuswamy.   

Abstract

In the title compound, C(21)H(23)NOS, the thia-zolidine ring adopts a twist conformation about one of its C-S bonds, while the cyclo-hexane ring has a chair conformation. The S and N atoms attached to the spiro C atom are in axial and equatorial orientations, respectively. The thia-zolidine ring forms dihedral angles of 86.24 (14) and 31.82 (15)° with the directly attached and remote terminal benzene rings, respectively. The dihedral angle between the two terminal benzene rings is 86.74 (14)°. In the crystal, the only significant directional inter-action is a weak C-H⋯π bond, which generates [010] chains.

Entities:  

Year:  2012        PMID: 22590319      PMCID: PMC3344557          DOI: 10.1107/S1600536812015358

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of spiro­thia­zolidin-4-ones, see: Singh et al. (2006 ▶); Kasimogullari & Cesur (2004 ▶); Dandia et al. (2004 ▶); Sahu et al. (2006 ▶). For a related structure, see: Akkurt et al. (2008 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H23NOS M = 337.46 Monoclinic, a = 9.8299 (9) Å b = 15.3823 (14) Å c = 12.0833 (10) Å β = 108.717 (4)° V = 1730.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 100 K 0.33 × 0.21 × 0.14 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.939, T max = 0.973 10508 measured reflections 3534 independent reflections 2144 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.145 S = 1.01 3534 reflections 217 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015358/hb6732sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015358/hb6732Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015358/hb6732Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23NOSF(000) = 720
Mr = 337.46Dx = 1.295 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2184 reflections
a = 9.8299 (9) Åθ = 2.6–29.6°
b = 15.3823 (14) ŵ = 0.19 mm1
c = 12.0833 (10) ÅT = 100 K
β = 108.717 (4)°Block, colourless
V = 1730.4 (3) Å30.33 × 0.21 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3534 independent reflections
Radiation source: fine-focus sealed tube2144 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.080
φ and ω scansθmax = 26.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→11
Tmin = 0.939, Tmax = 0.973k = −16→19
10508 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0622P)2 + 0.185P] where P = (Fo2 + 2Fc2)/3
3534 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.46 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33380 (9)−0.00046 (5)0.85069 (6)0.0253 (2)
O10.3626 (2)0.18832 (13)1.06649 (16)0.0320 (6)
N10.3843 (3)0.16539 (15)0.88513 (19)0.0211 (6)
C10.6646 (3)0.29768 (18)0.8312 (2)0.0241 (7)
H1A0.60470.32620.76330.029*
C20.8123 (4)0.3003 (2)0.8566 (3)0.0296 (8)
H2A0.85310.33140.80710.035*
C30.9005 (4)0.2575 (2)0.9542 (3)0.0309 (8)
H3A1.00170.25740.97020.037*
C40.8401 (4)0.2147 (2)1.0284 (3)0.0310 (8)
H4A0.90010.18681.09680.037*
C50.6923 (3)0.21282 (19)1.0028 (2)0.0257 (7)
H5A0.65170.18301.05360.031*
C60.6026 (3)0.25385 (18)0.9040 (2)0.0211 (7)
C70.4415 (3)0.25215 (19)0.8761 (2)0.0243 (7)
H7A0.41480.29190.93030.029*
H7B0.39620.27430.79580.029*
C80.3482 (3)0.1418 (2)0.9806 (2)0.0251 (7)
C90.2885 (3)0.0507 (2)0.9689 (2)0.0264 (7)
H9A0.18300.05220.95140.032*
H9B0.33130.01801.04250.032*
C100.3402 (3)0.10667 (19)0.7831 (2)0.0210 (7)
C110.1909 (3)0.13109 (19)0.7013 (2)0.0227 (7)
H11A0.19120.19280.67800.027*
H11B0.12020.12480.74360.027*
C120.1448 (3)0.07408 (18)0.5916 (2)0.0212 (7)
H12A0.04910.09280.54000.025*
H12B0.13750.01280.61400.025*
C130.2545 (3)0.08156 (19)0.5260 (2)0.0213 (7)
H13A0.26470.14490.51160.026*
C140.4012 (3)0.0504 (2)0.6074 (2)0.0242 (7)
H14A0.3940−0.01130.62840.029*
H14B0.47310.05430.56610.029*
C150.4503 (3)0.10522 (19)0.7182 (2)0.0221 (7)
H15A0.46790.16550.69750.027*
H15B0.54210.08170.77070.027*
C160.2087 (3)0.0375 (2)0.4081 (2)0.0217 (7)
C170.2160 (3)−0.05266 (19)0.3972 (2)0.0232 (7)
H17A0.2473−0.08770.46550.028*
C180.1782 (3)−0.0918 (2)0.2878 (2)0.0260 (7)
H18A0.1843−0.15320.28180.031*
C190.1316 (3)−0.0417 (2)0.1874 (2)0.0277 (7)
H19A0.1060−0.06840.11270.033*
C200.1226 (3)0.0480 (2)0.1970 (2)0.0282 (8)
H20A0.09100.08290.12860.034*
C210.1598 (3)0.0866 (2)0.3064 (2)0.0248 (7)
H21A0.15180.14780.31200.030*
U11U22U33U12U13U23
S10.0414 (5)0.0194 (4)0.0179 (4)−0.0007 (4)0.0134 (3)0.0011 (4)
O10.0528 (15)0.0301 (13)0.0176 (11)−0.0009 (11)0.0177 (10)−0.0058 (10)
N10.0318 (15)0.0173 (13)0.0172 (12)−0.0043 (11)0.0121 (10)−0.0026 (11)
C10.041 (2)0.0168 (16)0.0145 (14)−0.0017 (14)0.0096 (14)−0.0039 (13)
C20.049 (2)0.0215 (18)0.0238 (16)−0.0070 (15)0.0188 (15)−0.0078 (14)
C30.0326 (19)0.0268 (19)0.0346 (18)−0.0060 (14)0.0125 (15)−0.0142 (16)
C40.042 (2)0.0256 (18)0.0227 (16)0.0024 (15)0.0071 (15)−0.0057 (14)
C50.041 (2)0.0177 (17)0.0195 (16)−0.0028 (14)0.0112 (14)−0.0019 (14)
C60.0362 (19)0.0131 (15)0.0161 (14)−0.0020 (13)0.0111 (13)−0.0019 (13)
C70.042 (2)0.0149 (16)0.0182 (15)0.0026 (14)0.0122 (13)−0.0004 (13)
C80.0335 (19)0.0257 (18)0.0194 (15)0.0028 (14)0.0134 (13)0.0015 (14)
C90.0354 (19)0.0299 (19)0.0162 (15)−0.0036 (15)0.0114 (13)0.0005 (14)
C100.0338 (18)0.0181 (16)0.0142 (14)−0.0021 (13)0.0122 (13)−0.0035 (13)
C110.0289 (18)0.0246 (18)0.0190 (15)0.0016 (13)0.0138 (13)−0.0006 (13)
C120.0288 (18)0.0197 (17)0.0169 (14)0.0002 (13)0.0099 (12)−0.0003 (13)
C130.0315 (18)0.0196 (16)0.0155 (14)−0.0035 (13)0.0112 (13)−0.0025 (13)
C140.0309 (18)0.0252 (17)0.0208 (15)−0.0009 (14)0.0144 (13)−0.0035 (14)
C150.0281 (18)0.0228 (17)0.0174 (14)−0.0017 (13)0.0101 (13)−0.0017 (13)
C160.0262 (17)0.0228 (16)0.0192 (15)−0.0034 (13)0.0114 (12)−0.0019 (14)
C170.0342 (18)0.0212 (18)0.0172 (15)−0.0030 (14)0.0125 (13)0.0020 (14)
C180.0331 (19)0.0217 (17)0.0261 (16)−0.0024 (14)0.0139 (14)−0.0054 (14)
C190.0327 (19)0.035 (2)0.0165 (15)−0.0020 (15)0.0094 (13)−0.0069 (15)
C200.037 (2)0.032 (2)0.0176 (16)0.0040 (15)0.0103 (14)0.0027 (15)
C210.0339 (19)0.0221 (17)0.0207 (16)0.0000 (14)0.0122 (13)−0.0024 (14)
S1—C91.808 (3)C11—C121.532 (4)
S1—C101.849 (3)C11—H11A0.9900
O1—C81.231 (3)C11—H11B0.9900
N1—C81.360 (3)C12—C131.534 (4)
N1—C71.466 (4)C12—H12A0.9900
N1—C101.476 (3)C12—H12B0.9900
C1—C21.385 (4)C13—C161.510 (4)
C1—C61.394 (4)C13—C141.538 (4)
C1—H1A0.9500C13—H13A1.0000
C2—C31.385 (4)C14—C151.524 (4)
C2—H2A0.9500C14—H14A0.9900
C3—C41.391 (4)C14—H14B0.9900
C3—H3A0.9500C15—H15A0.9900
C4—C51.385 (4)C15—H15B0.9900
C4—H4A0.9500C16—C211.390 (4)
C5—C61.387 (4)C16—C171.397 (4)
C5—H5A0.9500C17—C181.391 (4)
C6—C71.510 (4)C17—H17A0.9500
C7—H7A0.9900C18—C191.385 (4)
C7—H7B0.9900C18—H18A0.9500
C8—C91.510 (4)C19—C201.390 (4)
C9—H9A0.9900C19—H19A0.9500
C9—H9B0.9900C20—C211.387 (4)
C10—C151.527 (4)C20—H20A0.9500
C10—C111.530 (4)C21—H21A0.9500
C9—S1—C1090.75 (13)C10—C11—H11B109.2
C8—N1—C7121.1 (2)C12—C11—H11B109.2
C8—N1—C10117.3 (2)H11A—C11—H11B107.9
C7—N1—C10120.8 (2)C11—C12—C13110.0 (2)
C2—C1—C6120.9 (3)C11—C12—H12A109.7
C2—C1—H1A119.5C13—C12—H12A109.7
C6—C1—H1A119.5C11—C12—H12B109.7
C1—C2—C3120.0 (3)C13—C12—H12B109.7
C1—C2—H2A120.0H12A—C12—H12B108.2
C3—C2—H2A120.0C16—C13—C12114.0 (2)
C2—C3—C4119.6 (3)C16—C13—C14113.4 (2)
C2—C3—H3A120.2C12—C13—C14108.4 (2)
C4—C3—H3A120.2C16—C13—H13A106.8
C5—C4—C3120.0 (3)C12—C13—H13A106.8
C5—C4—H4A120.0C14—C13—H13A106.8
C3—C4—H4A120.0C15—C14—C13110.9 (2)
C4—C5—C6120.9 (3)C15—C14—H14A109.5
C4—C5—H5A119.5C13—C14—H14A109.5
C6—C5—H5A119.5C15—C14—H14B109.5
C5—C6—C1118.5 (3)C13—C14—H14B109.5
C5—C6—C7121.0 (3)H14A—C14—H14B108.0
C1—C6—C7120.5 (3)C14—C15—C10112.5 (2)
N1—C7—C6113.5 (2)C14—C15—H15A109.1
N1—C7—H7A108.9C10—C15—H15A109.1
C6—C7—H7A108.9C14—C15—H15B109.1
N1—C7—H7B108.9C10—C15—H15B109.1
C6—C7—H7B108.9H15A—C15—H15B107.8
H7A—C7—H7B107.7C21—C16—C17118.0 (3)
O1—C8—N1124.7 (3)C21—C16—C13120.3 (3)
O1—C8—C9123.6 (3)C17—C16—C13121.7 (2)
N1—C8—C9111.6 (2)C18—C17—C16120.9 (3)
C8—C9—S1106.9 (2)C18—C17—H17A119.6
C8—C9—H9A110.3C16—C17—H17A119.6
S1—C9—H9A110.3C19—C18—C17120.3 (3)
C8—C9—H9B110.3C19—C18—H18A119.9
S1—C9—H9B110.3C17—C18—H18A119.9
H9A—C9—H9B108.6C18—C19—C20119.4 (3)
N1—C10—C15111.8 (2)C18—C19—H19A120.3
N1—C10—C11110.7 (2)C20—C19—H19A120.3
C15—C10—C11111.3 (2)C21—C20—C19120.0 (3)
N1—C10—S1102.67 (17)C21—C20—H20A120.0
C15—C10—S1110.1 (2)C19—C20—H20A120.0
C11—C10—S1110.0 (2)C20—C21—C16121.4 (3)
C10—C11—C12112.0 (2)C20—C21—H21A119.3
C10—C11—H11A109.2C16—C21—H21A119.3
C12—C11—H11A109.2
C6—C1—C2—C31.3 (4)C9—S1—C10—C15148.8 (2)
C1—C2—C3—C4−2.3 (4)C9—S1—C10—C11−88.2 (2)
C2—C3—C4—C52.0 (4)N1—C10—C11—C12177.3 (2)
C3—C4—C5—C6−0.6 (4)C15—C10—C11—C1252.4 (3)
C4—C5—C6—C1−0.4 (4)S1—C10—C11—C12−69.9 (3)
C4—C5—C6—C7−179.8 (3)C10—C11—C12—C13−57.8 (3)
C2—C1—C6—C50.1 (4)C11—C12—C13—C16−172.1 (2)
C2—C1—C6—C7179.4 (3)C11—C12—C13—C1460.4 (3)
C8—N1—C7—C6101.0 (3)C16—C13—C14—C15172.6 (2)
C10—N1—C7—C6−89.9 (3)C12—C13—C14—C15−59.6 (3)
C5—C6—C7—N1−47.5 (3)C13—C14—C15—C1055.7 (3)
C1—C6—C7—N1133.2 (3)N1—C10—C15—C14−175.6 (2)
C7—N1—C8—O1−1.7 (5)C11—C10—C15—C14−51.3 (3)
C10—N1—C8—O1−171.2 (3)S1—C10—C15—C1471.0 (3)
C7—N1—C8—C9178.6 (2)C12—C13—C16—C21104.1 (3)
C10—N1—C8—C99.1 (4)C14—C13—C16—C21−131.1 (3)
O1—C8—C9—S1−164.6 (3)C12—C13—C16—C17−77.1 (4)
N1—C8—C9—S115.1 (3)C14—C13—C16—C1747.8 (4)
C10—S1—C9—C8−26.3 (2)C21—C16—C17—C181.2 (4)
C8—N1—C10—C15−145.8 (3)C13—C16—C17—C18−177.7 (3)
C7—N1—C10—C1544.7 (3)C16—C17—C18—C19−0.4 (4)
C8—N1—C10—C1189.6 (3)C17—C18—C19—C20−0.2 (4)
C7—N1—C10—C11−79.9 (3)C18—C19—C20—C21−0.2 (4)
C8—N1—C10—S1−27.8 (3)C19—C20—C21—C161.0 (5)
C7—N1—C10—S1162.7 (2)C17—C16—C21—C20−1.5 (4)
C9—S1—C10—N129.6 (2)C13—C16—C21—C20177.4 (3)
D—H···AD—HH···AD···AD—H···A
C17—H17A···Cg1i0.952.723.565 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17ACg1i0.952.723.565 (3)149

Symmetry code: (i) .

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Authors:  Anshu Dandia; Ruby Singh; Sarita Khaturia; Claude Mérienne; Georges Morgant; André Loupy
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Nalan Terzioğlu Klip; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

4.  Fused heterocycles: synthesis of some new imidazo[1,2-a]- pyridine derivatives.

Authors:  Birgul Ozden Kasimogullari; Zafer Cesur
Journal:  Molecules       Date:  2004-09-30       Impact factor: 4.411

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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