Literature DB >> 21202976

2-(1H-Benzimidazol-1-yl)-1-phenyl-ethanone.

Ozden Ozel Güven, Taner Erdoğan, Simon J Coles, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(15)H(12)N(2)O, the planar benzimidazole system is oriented at a dihedral angle of 80.43 (5)° with respect to the phenyl ring. In the crystal structure, non-classical inter-molecular C-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into layers parallel to the ab plane.

Entities:  

Year:  2008        PMID: 21202976      PMCID: PMC2961837          DOI: 10.1107/S1600536808019107

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backgroud, see: Göker et al. (2002 ▶); Özden et al. (2004 ▶); Özel Güven et al. (2007a ▶,b ▶); Schar et al. (1976 ▶). For related literature, see: Peeters et al. (1997 ▶); Freer et al. (1986 ▶); Özel Güven et al. (2007 ▶).

Experimental

Crystal data

C15H12N2O M = 236.27 Monoclinic, a = 5.0475 (2) Å b = 11.2319 (6) Å c = 10.3517 (5) Å β = 96.620 (3)° V = 582.96 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 120 (2) K 0.45 × 0.22 × 0.03 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.962, T max = 0.997 6918 measured reflections 2639 independent reflections 2265 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.119 S = 1.06 2639 reflections 212 parameters 1 restraint All H-atom parameters refined Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019107/si2097sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019107/si2097Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2OF000 = 248
Mr = 236.27Dx = 1.346 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1379 reflections
a = 5.0475 (2) Åθ = 2.9–27.5º
b = 11.2319 (6) ŵ = 0.09 mm1
c = 10.3517 (5) ÅT = 120 (2) K
β = 96.620 (3)ºPlate, colorless
V = 582.96 (5) Å30.45 × 0.22 × 0.03 mm
Z = 2
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer2639 independent reflections
Radiation source: fine-focus sealed tube2265 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.057
Detector resolution: 9.091 pixels mm-1θmax = 27.5º
T = 120(2) Kθmin = 3.6º
φ and ω scansh = −6→6
Absorption correction: multi-scan(SADABS; Sheldrick, 2007)k = −14→14
Tmin = 0.962, Tmax = 0.997l = −13→13
6918 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047All H-atom parameters refined
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0651P)2 + 0.019P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2639 reflectionsΔρmax = 0.23 e Å3
212 parametersΔρmin = −0.22 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.091 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0968 (3)0.55671 (14)0.26162 (13)0.0288 (4)
N10.3784 (3)0.56655 (14)0.05460 (15)0.0236 (4)
N20.3592 (4)0.41520 (16)−0.08838 (17)0.0301 (4)
C10.4848 (4)0.46224 (19)0.0180 (2)0.0265 (4)
H10.651 (6)0.432 (3)0.074 (3)0.048 (7)*
C20.1553 (4)0.49603 (17)−0.12561 (19)0.0251 (4)
C3−0.0424 (4)0.49415 (19)−0.2318 (2)0.0288 (5)
H3−0.051 (5)0.422 (2)−0.291 (2)0.034 (6)*
C4−0.2249 (4)0.5857 (2)−0.2443 (2)0.0315 (5)
H4−0.366 (5)0.584 (3)−0.317 (3)0.045 (7)*
C5−0.2133 (4)0.67987 (19)−0.1537 (2)0.0293 (5)
H5−0.340 (4)0.742 (2)−0.168 (2)0.020 (5)*
C6−0.0171 (4)0.68387 (18)−0.0477 (2)0.0258 (4)
H6−0.013 (5)0.753 (3)0.011 (3)0.048 (7)*
C70.1634 (4)0.59090 (17)−0.03658 (18)0.0237 (4)
C80.4659 (4)0.63860 (18)0.16674 (18)0.0241 (4)
H810.481 (4)0.720 (2)0.143 (2)0.025 (5)*
H820.642 (4)0.609 (2)0.203 (2)0.025 (5)*
C90.2788 (4)0.62815 (17)0.27150 (18)0.0222 (4)
C100.3283 (4)0.70936 (18)0.38542 (18)0.0226 (4)
C110.5216 (4)0.79730 (19)0.39188 (18)0.0273 (5)
H110.646 (4)0.805 (2)0.326 (2)0.024 (5)*
C120.5582 (4)0.8738 (2)0.4985 (2)0.0310 (5)
H120.695 (5)0.934 (2)0.503 (2)0.031 (6)*
C130.3975 (4)0.8617 (2)0.5977 (2)0.0351 (5)
H130.420 (5)0.920 (3)0.678 (3)0.047 (7)*
C140.2068 (5)0.7743 (2)0.5926 (2)0.0352 (5)
H140.089 (6)0.761 (3)0.658 (3)0.061 (9)*
C150.1691 (4)0.69726 (19)0.4872 (2)0.0284 (5)
H150.036 (4)0.636 (2)0.481 (2)0.025 (6)*
U11U22U33U12U13U23
O10.0307 (7)0.0341 (8)0.0215 (7)−0.0053 (6)0.0026 (5)0.0005 (6)
N10.0279 (8)0.0236 (8)0.0200 (8)−0.0005 (7)0.0049 (6)−0.0003 (6)
N20.0377 (9)0.0257 (8)0.0282 (9)−0.0016 (8)0.0098 (7)−0.0009 (7)
C10.0316 (10)0.0239 (9)0.0249 (10)−0.0013 (8)0.0071 (8)0.0010 (8)
C20.0276 (9)0.0245 (10)0.0245 (10)−0.0034 (8)0.0085 (7)−0.0015 (8)
C30.0341 (10)0.0313 (11)0.0219 (10)−0.0098 (9)0.0075 (8)−0.0055 (8)
C40.0300 (11)0.0417 (12)0.0230 (10)−0.0051 (9)0.0034 (8)0.0013 (8)
C50.0303 (10)0.0336 (12)0.0244 (10)0.0019 (9)0.0052 (8)0.0009 (8)
C60.0297 (10)0.0265 (10)0.0222 (9)0.0016 (8)0.0072 (7)−0.0015 (8)
C70.0271 (9)0.0276 (10)0.0170 (9)−0.0050 (8)0.0045 (7)0.0006 (8)
C80.0269 (10)0.0256 (11)0.0200 (9)−0.0007 (8)0.0029 (8)−0.0002 (8)
C90.0210 (9)0.0241 (9)0.0207 (9)0.0012 (8)−0.0003 (7)0.0034 (7)
C100.0249 (9)0.0246 (9)0.0173 (9)0.0043 (8)−0.0022 (7)0.0027 (7)
C110.0293 (10)0.0311 (11)0.0218 (10)−0.0011 (9)0.0041 (8)0.0027 (8)
C120.0378 (11)0.0294 (11)0.0248 (10)−0.0045 (10)−0.0001 (9)−0.0017 (8)
C130.0464 (13)0.0341 (12)0.0248 (11)−0.0012 (10)0.0043 (9)−0.0040 (9)
C140.0414 (11)0.0437 (13)0.0222 (10)−0.0004 (10)0.0101 (9)−0.0020 (9)
C150.0297 (10)0.0311 (11)0.0243 (10)−0.0029 (9)0.0032 (7)0.0015 (8)
O1—C91.215 (2)C7—C21.406 (3)
N1—C11.361 (3)C8—H810.95 (3)
N1—C71.381 (2)C8—H820.98 (2)
N1—C81.442 (3)C9—C81.522 (3)
N2—C11.317 (3)C10—C91.489 (3)
N2—C21.393 (3)C10—C151.403 (3)
C1—H11.02 (3)C11—C101.384 (3)
C3—C21.398 (3)C11—C121.394 (3)
C3—C41.377 (3)C11—H110.99 (2)
C3—H31.01 (3)C12—H120.96 (3)
C4—H40.98 (3)C13—C121.386 (3)
C5—C41.410 (3)C13—C141.371 (3)
C5—H50.95 (2)C13—H131.06 (3)
C6—C51.391 (3)C14—C151.389 (3)
C6—C71.382 (3)C14—H140.96 (3)
C6—H60.99 (3)C15—H150.96 (2)
C1—N1—C7106.55 (16)N1—C8—H81111.1 (13)
C1—N1—C8127.82 (17)N1—C8—H82107.2 (13)
C7—N1—C8125.63 (16)C9—C8—H81109.4 (13)
C1—N2—C2103.83 (17)C9—C8—H82108.0 (13)
N1—C1—H1116.9 (16)H81—C8—H82109.1 (19)
N2—C1—N1114.25 (18)O1—C9—C8121.07 (16)
N2—C1—H1128.8 (16)O1—C9—C10121.84 (17)
N2—C2—C3130.22 (18)C10—C9—C8117.10 (15)
N2—C2—C7110.35 (17)C11—C10—C9121.91 (17)
C3—C2—C7119.43 (18)C11—C10—C15119.61 (18)
C2—C3—H3117.7 (14)C15—C10—C9118.47 (18)
C4—C3—C2118.14 (19)C10—C11—C12120.42 (18)
C4—C3—H3124.0 (14)C10—C11—H11122.1 (13)
C3—C4—C5121.5 (2)C12—C11—H11117.4 (13)
C3—C4—H4118.4 (17)C13—C12—C11119.4 (2)
C5—C4—H4120.1 (17)C13—C12—H12120.8 (15)
C6—C5—C4121.3 (2)C11—C12—H12119.8 (15)
C6—C5—H5120.4 (13)C12—C13—H13120.3 (15)
C4—C5—H5118.3 (13)C14—C13—C12120.7 (2)
C5—C6—H6118.1 (15)C14—C13—H13119.0 (15)
C7—C6—C5116.34 (19)C13—C14—C15120.5 (2)
C7—C6—H6125.5 (15)C13—C14—H14125 (2)
N1—C7—C2105.01 (16)C15—C14—H14115 (2)
N1—C7—C6131.69 (17)C10—C15—H15118.6 (13)
C6—C7—C2123.30 (18)C14—C15—C10119.4 (2)
N1—C8—C9111.88 (15)C14—C15—H15122.0 (13)
C7—N1—C1—N2−0.3 (2)N1—C7—C2—N20.66 (19)
C8—N1—C1—N2178.87 (18)N1—C7—C2—C3−179.80 (17)
C1—N1—C7—C2−0.21 (18)C6—C7—C2—N2−179.13 (17)
C1—N1—C7—C6179.6 (2)C6—C7—C2—C30.4 (3)
C8—N1—C7—C2−179.44 (17)O1—C9—C8—N17.0 (2)
C8—N1—C7—C60.3 (3)C10—C9—C8—N1−172.76 (16)
C1—N1—C8—C9−105.9 (2)C11—C10—C9—O1−174.63 (18)
C7—N1—C8—C973.2 (2)C11—C10—C9—C85.1 (3)
C2—N2—C1—N10.7 (2)C15—C10—C9—O13.9 (3)
C1—N2—C2—C3179.7 (2)C15—C10—C9—C8−176.38 (17)
C1—N2—C2—C7−0.8 (2)C9—C10—C15—C14−178.14 (19)
C4—C3—C2—N2178.8 (2)C11—C10—C15—C140.4 (3)
C4—C3—C2—C7−0.7 (3)C10—C11—C12—C13−0.6 (3)
C2—C3—C4—C50.6 (3)C12—C11—C10—C9178.37 (18)
C6—C5—C4—C3−0.2 (3)C12—C11—C10—C15−0.1 (3)
C5—C6—C7—N1−179.7 (2)C14—C13—C12—C111.1 (3)
C5—C6—C7—C20.0 (3)C12—C13—C14—C15−0.8 (3)
C7—C6—C5—C4−0.1 (3)C13—C14—C15—C100.0 (3)
D—H···AD—HH···AD···AD—H···A
C8—H81···N2i0.95 (2)2.43 (2)3.355 (3)165.2 (17)
C8—H82···O1ii0.98 (2)2.38 (2)3.351 (3)170.1 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H81⋯N2i0.95 (2)2.43 (2)3.355 (3)165.2 (17)
C8—H82⋯O1ii0.98 (2)2.38 (2)3.351 (3)170.1 (17)

Symmetry codes: (i) ; (ii) .

  5 in total

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2.  A short history of SHELX.

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4.  Synthesis and antimicrobial activity of some novel phenyl and benzimidazole substituted benzyl ethers.

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Journal:  Bioorg Med Chem Lett       Date:  2007-01-25       Impact factor: 2.823

5.  Synthesis and potent antimicrobial activity of some novel 4-(5, 6-dichloro-1H-benzimidazol-2-yl)-N-substituted benzamides.

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  5 in total
  3 in total

1.  1-Phenyl-2-(1H-1,2,4-triazol-1-yl)ethanone.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

2.  2-(2H-Indazol-2-yl)-1-phenyl-ethanone.

Authors:  Ozden Ozel Güven; Gökhan Türk; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04

3.  1-(Furan-2-yl)-2-(2H-indazol-2-yl)ethanone.

Authors:  Ozden Ozel Güven; Gökhan Türk; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-29
  3 in total

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