Literature DB >> 21201059

catena-Poly[[dipyridine-mercury(II)]-μ-5-amino-2,4,6-triiodo-isophthalato].

Yu Zhang, Jianying Zhao, Guodong Tang, Zhengjing Jiang.   

Abstract

The reaction of mercury(II) chloride with 5-amino-2,4,6-triiodo-isophthalic acid in pyridine solution leads to the formation of the title compound, [Hg(C(8)H(2)I(3)NO(4))(C(5)H(5)N)(2)](n). The structure contains a four-coordinate Hg(2+) ion in a distorted tetra-hedral geometry, which lies on a crystallographic twofold axis. The Hg(2+) ion is bonded to two N atoms from two pyridine ligands and two carboxylate O atoms from two 5-amino-2,4,6-triiodo-isophthalate anions. The two carboxyl-ate groups of individual 5-amino-2,4,6-triiodo-isophthalate anions act as a bridge to the Hg centers. This anion also resides on a twofold axis, which passes through the amino N and the trans standing I atoms. The Hg-O distance is 2.337 (6) and the Hg-N distance is 2.244 (8) Å.

Entities:  

Year:  2008        PMID: 21201059      PMCID: PMC2959462          DOI: 10.1107/S1600536808030468

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Ziegler et al. (1997 ▶). For related structures, see: Bebout et al. (1998 ▶); Beck & Sheldrick (2008 ▶); Matković-Čalogović et al. (2002 ▶); Weil (2001 ▶).

Experimental

Crystal data

[Hg(C8H2I3NO4)(C5H5N)2] M = 915.60 Tetragonal, a = 11.9338 (3) Å c = 16.0532 (10) Å V = 2286.23 (16) Å3 Z = 4 Mo Kα radiation μ = 10.81 mm−1 T = 296 (2) K 0.20 × 0.15 × 0.15 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.16, T max = 0.20 10399 measured reflections 2251 independent reflections 1661 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.067 S = 1.06 2251 reflections 134 parameters 57 restraints H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.53 e Å−3 Absolute structure: Flack (1983 ▶), 897 Friedel pairs Flack parameter: 0.010 (9) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030468/fj2148sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030468/fj2148Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Hg(C8H2I3NO4)(C5H5N)2]Dx = 2.660 Mg m3
Mr = 915.60Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P41212Cell parameters from 2411 reflections
Hall symbol: P 4abw 2nwθ = 2.1–25.1°
a = 11.9338 (3) ŵ = 10.81 mm1
c = 16.0532 (10) ÅT = 296 K
V = 2286.23 (16) Å3Pyramid, colorless
Z = 40.20 × 0.15 × 0.15 mm
F(000) = 1648
Bruker SMART APEX CCD diffractometer2251 independent reflections
Radiation source: fine-focus sealed tube1661 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→14
Tmin = 0.16, Tmax = 0.20k = −14→12
10399 measured reflectionsl = −19→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0151P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2251 reflectionsΔρmax = 0.63 e Å3
134 parametersΔρmin = −0.53 e Å3
57 restraintsAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.010 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.6137 (6)0.3863 (6)0.75000.036 (2)
C20.6218 (7)0.3118 (6)0.6838 (5)0.041 (2)
C30.7046 (7)0.2319 (7)0.6843 (5)0.046 (2)
C40.7809 (7)0.2191 (7)0.75000.049 (3)
C50.5357 (7)0.3173 (8)0.6152 (6)0.051 (2)
C60.4694 (10)0.1635 (9)0.4089 (8)0.097 (2)
H60.53080.18440.44100.116*
C70.4795 (12)0.0725 (11)0.3565 (8)0.112 (2)
H70.54510.03050.35490.134*
C80.3905 (11)0.0459 (11)0.3071 (9)0.118 (2)
H80.3965−0.00870.26600.142*
C90.2919 (11)0.1019 (10)0.3198 (8)0.111 (2)
H90.22640.07870.29370.133*
C100.2919 (10)0.1900 (10)0.3703 (8)0.098 (2)
H100.22660.23220.37380.118*
Hg10.37049 (3)0.37049 (3)0.50000.05760 (17)
I10.72004 (6)0.12434 (7)0.58073 (4)0.0764 (2)
I30.48846 (5)0.51154 (5)0.75000.0606 (2)
N10.8605 (6)0.1395 (6)0.75000.065 (3)
H1A0.90600.13400.79140.077*0.50
H1B0.86600.09400.70860.077*0.50
N20.3772 (8)0.2212 (7)0.4151 (5)0.0831 (19)
O10.4543 (5)0.2528 (6)0.6227 (4)0.0659 (18)
O20.5496 (5)0.3874 (6)0.5577 (4)0.0669 (18)
U11U22U33U12U13U23
C10.033 (4)0.033 (4)0.041 (6)0.002 (5)0.006 (4)0.006 (4)
C20.041 (5)0.043 (5)0.039 (5)0.002 (4)0.011 (5)0.010 (4)
C30.045 (5)0.049 (5)0.043 (5)0.002 (4)−0.002 (4)0.000 (4)
C40.042 (4)0.042 (4)0.062 (8)0.009 (6)0.004 (5)0.004 (5)
C50.039 (5)0.062 (6)0.051 (6)0.008 (3)−0.003 (4)−0.008 (5)
C60.091 (5)0.089 (5)0.111 (5)0.019 (4)−0.038 (4)−0.034 (4)
C70.104 (5)0.099 (5)0.132 (6)0.027 (4)−0.041 (4)−0.043 (4)
C80.113 (5)0.103 (5)0.138 (6)0.023 (4)−0.046 (5)−0.051 (4)
C90.103 (5)0.096 (5)0.133 (6)0.015 (4)−0.052 (5)−0.045 (4)
C100.092 (5)0.085 (5)0.117 (5)0.014 (4)−0.046 (4)−0.033 (4)
Hg10.0627 (2)0.0627 (2)0.0475 (3)0.0051 (3)−0.0068 (2)0.0068 (2)
I10.0676 (4)0.0958 (6)0.0658 (5)0.0210 (4)0.0003 (4)−0.0324 (4)
I30.0547 (3)0.0547 (3)0.0723 (6)0.0119 (4)0.0044 (3)0.0044 (3)
N10.070 (4)0.070 (4)0.053 (6)0.004 (7)−0.004 (4)−0.004 (4)
N20.081 (4)0.072 (4)0.097 (4)0.013 (3)−0.040 (4)−0.021 (3)
O10.050 (4)0.077 (5)0.071 (4)−0.001 (3)−0.017 (3)0.008 (3)
O20.068 (4)0.088 (5)0.044 (4)0.001 (4)−0.006 (3)0.020 (4)
C1—C2i1.389 (9)C8—C91.368 (15)
C1—I32.113 (9)C8—H80.9300
C2—C31.373 (10)C9—C101.327 (15)
C2—C51.508 (12)C9—H90.9300
C3—C41.402 (10)C10—N21.302 (12)
C3—I12.108 (8)C10—H100.9300
C4—N11.344 (14)Hg1—N22.244 (8)
C4—C3i1.402 (10)Hg1—N2ii2.244 (8)
C5—O21.257 (10)Hg1—O2ii2.337 (6)
C5—O11.245 (10)Hg1—O22.337 (6)
C5—Hg12.777 (9)Hg1—O1ii2.618 (6)
C6—N21.302 (12)Hg1—O12.618 (6)
C6—C71.379 (15)Hg1—C5ii2.777 (9)
C6—H60.9300N1—H1A0.8600
C7—C81.363 (15)N1—H1B0.8600
C7—H70.9300
C2i—C1—C2119.7 (9)N2ii—Hg1—O2ii106.0 (3)
C2i—C1—I3120.2 (5)N2—Hg1—O2106.0 (3)
C2—C1—I3120.2 (5)N2ii—Hg1—O2118.8 (3)
C3—C2—C1119.4 (8)O2ii—Hg1—O289.9 (3)
C3—C2—C5121.6 (8)N2—Hg1—O1ii82.3 (2)
C1—C2—C5118.9 (7)N2ii—Hg1—O1ii91.0 (3)
C2—C3—C4123.1 (8)O2ii—Hg1—O1ii53.1 (2)
C2—C3—I1118.8 (6)O2—Hg1—O1ii139.1 (2)
C4—C3—I1118.1 (6)N2—Hg1—O191.0 (3)
N1—C4—C3i122.4 (5)N2ii—Hg1—O182.3 (2)
N1—C4—C3122.4 (5)O2ii—Hg1—O1139.1 (2)
C3i—C4—C3115.2 (10)O2—Hg1—O153.1 (2)
O2—C5—O1125.8 (8)O1ii—Hg1—O1167.5 (3)
O2—C5—C2118.4 (8)N2—Hg1—C5101.4 (3)
O1—C5—C2115.8 (8)N2ii—Hg1—C599.6 (3)
O2—C5—Hg156.8 (4)O2ii—Hg1—C5114.3 (3)
O1—C5—Hg169.6 (5)O2—Hg1—C526.7 (2)
C2—C5—Hg1168.6 (6)O1ii—Hg1—C5165.8 (3)
N2—C6—C7122.5 (12)O1—Hg1—C526.5 (2)
N2—C6—H6118.7N2—Hg1—C5ii99.6 (3)
C7—C6—H6118.7N2ii—Hg1—C5ii101.4 (3)
C6—C7—C8118.0 (13)O2ii—Hg1—C5ii26.7 (2)
C6—C7—H7121.0O2—Hg1—C5ii114.3 (3)
C8—C7—H7121.0O1ii—Hg1—C5ii26.5 (2)
C9—C8—C7118.0 (12)O1—Hg1—C5ii165.8 (3)
C9—C8—H8121.0C5—Hg1—C5ii140.2 (4)
C7—C8—H8121.0C4—N1—H1A120.0
C10—C9—C8118.5 (12)C4—N1—H1B120.0
C10—C9—H9120.7H1A—N1—H1B120.0
C8—C9—H9120.7C6—N2—C10117.8 (10)
N2—C10—C9124.4 (12)C6—N2—Hg1119.8 (7)
N2—C10—H10117.8C10—N2—Hg1122.4 (7)
C9—C10—H10117.8C5—O1—Hg183.9 (5)
N2—Hg1—N2ii115.2 (5)C5—O2—Hg196.5 (5)
N2—Hg1—O2ii118.8 (3)
  3 in total

1.  Aquabromo(6-carboxypyridine-2-carboxylato-O,N,O')mercury(II).

Authors:  Dubravka Matković-Calogović; Jasminka Popović; Zora Popović; Igor Picek; Zeljka Soldin
Journal:  Acta Crystallogr C       Date:  2001-12-22       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  5-Amino-2,4,6-triiodo-isophthalic acid monohydrate.

Authors:  Tobias Beck; George M Sheldrick
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19
  3 in total
  1 in total

1.  catena-Poly[[dipyridine-cadmium(II)]-μ-5-amino-2,4,6-triiodo-isophthalato].

Authors:  Yang Zou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09
  1 in total

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