Literature DB >> 21588812

catena-Poly[[dipyridine-cadmium(II)]-μ-5-amino-2,4,6-triiodo-isophthalato].

Yang Zou1.   

Abstract

The hydro-thermal reaction of cadmium(II) nitrate with n class="Chemical">5-amino-2,4,6-triiodo-isophthalic acid and pyridine in DMF solution leads to the formation of the title compound, [Cd(C(8)H(2)I(3)NO(4))(C(5)H(5)N)(2)](n). The structure contains a four-coordinate Cd(2+ )ion in a distorted tetra-hedral geometry, which lies on a crystallographic twofold rotation axis. The Cd(2+ )ion is bonded to two N atoms from two pyridine ligands and two carboxyl-ate O atoms from two 5-amino-2,4,6-triiodo-isophthalate anions. The Cd-O distances are 2.429 (5) and 2.305 (5) Å and the Cd-N distance is 2.236 (8) Å. The two carboxyl-ate groups of individual 5-amino-2,4,6-triiodo-isophthalate anions act as a bridge to the Cd(2+) atoms. leading to a chain structure along the c axis.

Entities:  

Year:  2010        PMID: 21588812      PMCID: PMC3009045          DOI: 10.1107/S1600536810039498

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isotypic Hg complex, see: Zhang et al. (2008 ▶). For the structure of 5-amino-2,4,6-triiodo­isophthalic acid monohydrate, see: Beck & Sheldrick (2008 ▶). For the structures of related metal complexes, see: n class="Gene">Dai et al. (2008 ▶)·For the use of triiodinated aromatic compounds in radiology, see: Estep et al. (2000 ▶).

Experimental

Crystal data

[Cd(C8H2I3NO4)(C5H5N)2] M = 827.41 Tetragoical">nal, a = 11.824 (3) Å c = 15.841 (9) Å V = 2214.7 (15) Å3 Z = 4 Mo Kα radiation μ = 5.20 mm−1 T = 293 K 0.25 × 0.25 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker 2003 ▶) T min = 0.357, T max = 0.423 14248 measured reflections 2714 independent reflections 1949 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.089 S = 1.02 2714 reflections 134 parameters 60 restraints H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.87 e Å−3 Absolute structure: Flack (1983 ▶), 1096 Friedel pairs Flack parameter: −0.04 (6) Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reductioical">n: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2000 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, New_Global_Publ_Block. DOI: 10.1107/S1600536810039498/si2296sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039498/si2296Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C8H2I3NO4)(C5H5N)2]Dx = 2.482 Mg m3
Mr = 827.41Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P41212Cell parameters from 1949 reflections
Hall symbol: P 4abw 2nwθ = 2.2–28.2°
a = 11.824 (3) ŵ = 5.20 mm1
c = 15.841 (9) ÅT = 293 K
V = 2214.7 (15) Å3Block, light yellow
Z = 40.25 × 0.25 × 0.20 mm
F(000) = 1520
Bruker SMART CCD diffractometer2714 independent reflections
Radiation source: fine-focus sealed tube1949 reflections with I > 2σ(I)
graphiteRint = 0.054
Detector resolution: none pixels mm-1θmax = 28.2°, θmin = 2.2°
phi and ω scansh = −15→15
Absorption correction: multi-scan (SADABS; Bruker 2003)k = −14→15
Tmin = 0.357, Tmax = 0.423l = −17→21
14248 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0338P)2 + 2.974P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2714 reflectionsΔρmax = 0.60 e Å3
134 parametersΔρmin = −0.87 e Å3
60 restraintsAbsolute structure: Flack (1983), 1096 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.04 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cd10.62771 (5)0.37229 (5)0.25000.0572 (2)
I10.51631 (4)0.51631 (4)0.00000.0630 (2)
I20.28105 (5)0.12921 (6)0.17206 (4)0.0802 (2)
N10.1416 (5)0.1416 (5)0.00000.064 (2)
H1A0.13570.09610.04210.077*0.50
H1B0.09610.1357−0.04210.077*0.50
N20.6179 (7)0.2214 (7)0.3348 (5)0.0771 (19)
O10.5507 (5)0.2646 (5)0.1328 (3)0.0668 (15)
O20.6079 (5)0.5525 (4)0.3035 (3)0.0684 (16)
C10.2221 (6)0.2221 (6)0.00000.051 (2)
C20.2982 (6)0.2357 (6)0.0666 (4)0.0462 (16)
C30.3809 (6)0.3171 (6)0.0673 (4)0.0479 (17)
C40.3908 (5)0.3908 (5)0.00000.043 (2)
C50.4652 (7)0.3247 (7)0.1375 (5)0.0540 (19)
C60.5209 (10)0.1691 (10)0.3519 (9)0.113 (3)
H60.45600.19460.32480.135*
C70.5108 (12)0.0835 (12)0.4049 (10)0.134 (4)
H70.44190.04640.41140.161*
C80.6063 (12)0.0494 (13)0.4514 (11)0.147 (4)
H80.6026−0.00390.49440.177*
C90.7027 (12)0.0999 (13)0.4288 (10)0.143 (4)
H90.77010.07450.45230.172*
C100.7060 (10)0.1827 (10)0.3754 (8)0.113 (4)
H100.77550.21690.36540.135*
U11U22U33U12U13U23
Cd10.0617 (3)0.0617 (3)0.0482 (4)−0.0120 (4)−0.0049 (3)−0.0049 (3)
I10.0559 (3)0.0559 (3)0.0773 (5)−0.0148 (3)0.0062 (3)−0.0062 (3)
I20.0755 (4)0.0957 (5)0.0695 (3)−0.0276 (4)−0.0027 (3)0.0291 (3)
N10.060 (4)0.060 (4)0.071 (5)−0.027 (5)−0.007 (4)0.007 (4)
N20.075 (5)0.073 (5)0.083 (5)−0.004 (4)−0.013 (4)−0.005 (4)
O10.054 (3)0.091 (4)0.056 (3)0.008 (3)−0.006 (3)−0.012 (3)
O20.091 (4)0.056 (3)0.058 (3)−0.003 (3)−0.026 (3)−0.005 (2)
C10.047 (3)0.047 (3)0.058 (5)−0.009 (5)0.003 (4)−0.003 (4)
C20.041 (4)0.050 (4)0.048 (4)−0.001 (3)0.005 (3)0.001 (3)
C30.040 (4)0.052 (4)0.052 (4)−0.006 (3)0.009 (3)−0.005 (3)
C40.036 (3)0.036 (3)0.058 (5)0.000 (4)0.013 (3)−0.013 (3)
C50.048 (5)0.061 (5)0.053 (4)−0.011 (4)0.006 (4)−0.003 (4)
C60.077 (6)0.105 (7)0.156 (9)−0.028 (6)−0.026 (6)0.040 (6)
C70.102 (7)0.127 (8)0.173 (9)−0.027 (7)−0.027 (7)0.054 (7)
C80.105 (8)0.142 (8)0.196 (9)−0.010 (7)−0.031 (8)0.062 (8)
C90.108 (8)0.129 (8)0.192 (9)−0.026 (7)−0.043 (8)0.046 (8)
C100.075 (6)0.102 (7)0.161 (9)−0.008 (6)−0.038 (6)0.048 (6)
Cd1—N22.236 (8)C1—C21.395 (9)
Cd1—N2i2.236 (8)C1—C2ii1.395 (9)
Cd1—O2i2.305 (5)C2—C31.373 (9)
Cd1—O22.305 (5)C3—C41.382 (8)
Cd1—O1i2.429 (5)C3—C51.495 (11)
Cd1—O12.429 (5)C4—C3ii1.382 (8)
Cd1—C5i2.681 (8)C5—O2i1.246 (9)
Cd1—C52.681 (8)C6—C71.321 (16)
I1—C42.098 (8)C6—H60.9300
I2—C22.102 (7)C7—C81.407 (17)
N1—C11.346 (12)C7—H70.9300
N1—H1A0.8600C8—C91.336 (17)
N1—H1B0.8600C8—H80.9300
N2—C101.307 (12)C9—C101.293 (16)
N2—C61.331 (13)C9—H90.9300
O1—C51.239 (10)C10—H100.9300
O2—C5i1.246 (9)
N2—Cd1—N2i116.3 (4)C5i—O2—Cd193.2 (5)
N2—Cd1—O2i104.7 (3)N1—C1—C2122.5 (4)
N2i—Cd1—O2i120.8 (2)N1—C1—C2ii122.5 (4)
N2—Cd1—O2120.8 (2)C2—C1—C2ii115.0 (9)
N2i—Cd1—O2104.7 (3)C3—C2—C1123.1 (7)
O2i—Cd1—O287.0 (3)C3—C2—I2118.8 (5)
N2—Cd1—O1i82.4 (2)C1—C2—I2118.0 (5)
N2i—Cd1—O1i91.2 (2)C2—C3—C4119.8 (7)
O2i—Cd1—O1i136.7 (2)C2—C3—C5121.6 (7)
O2—Cd1—O1i54.96 (18)C4—C3—C5118.6 (6)
N2—Cd1—O191.2 (2)C3ii—C4—C3119.2 (8)
N2i—Cd1—O182.4 (2)C3ii—C4—I1120.4 (4)
O2i—Cd1—O154.96 (18)C3—C4—I1120.4 (4)
O2—Cd1—O1136.7 (2)O1—C5—O2i123.3 (7)
O1i—Cd1—O1167.9 (3)O1—C5—C3117.7 (7)
N2—Cd1—C5i100.6 (3)O2i—C5—C3119.0 (7)
N2i—Cd1—C5i101.2 (3)O1—C5—Cd164.8 (4)
O2i—Cd1—C5i111.4 (2)O2i—C5—Cd159.1 (4)
O2—Cd1—C5i27.7 (2)C3—C5—Cd1169.9 (5)
O1i—Cd1—C5i27.5 (2)C7—C6—N2124.3 (13)
O1—Cd1—C5i164.3 (3)C7—C6—H6117.8
N2—Cd1—C5101.2 (3)N2—C6—H6117.8
N2i—Cd1—C5100.6 (3)C6—C7—C8118.7 (14)
O2i—Cd1—C527.7 (2)C6—C7—H7120.7
O2—Cd1—C5111.4 (2)C8—C7—H7120.7
O1i—Cd1—C5164.3 (3)C9—C8—C7114.6 (15)
O1—Cd1—C527.5 (2)C9—C8—H8122.7
C5i—Cd1—C5138.0 (4)C7—C8—H8122.7
C1—N1—H1A120.0C10—C9—C8122.6 (15)
C1—N1—H1B120.0C10—C9—H9118.7
H1A—N1—H1B120.0C8—C9—H9118.7
C10—N2—C6115.1 (9)C9—C10—N2124.2 (12)
C10—N2—Cd1122.3 (7)C9—C10—H10117.9
C6—N2—Cd1122.5 (7)N2—C10—H10117.9
C5—O1—Cd187.7 (5)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A metal-organic nanotube exhibiting reversible adsorption of (H2O)12 cluster.

Authors:  Fangna Dai; Haiyan He; Daofeng Sun
Journal:  J Am Chem Soc       Date:  2008-10-03       Impact factor: 15.419

3.  1,3,5-Trialkyl-2,4,6-triiodobenzenes: novel X-ray contrast agents for gastrointestinal imaging.

Authors:  K G Estep; K A Josef; E R Bacon; C R Illig; J L Toner; D Mishra; W F Blazak; D M Miller; D K Johnson; J M Allen; A Spencer; S A Wilson
Journal:  J Med Chem       Date:  2000-05-18       Impact factor: 7.446

4.  catena-Poly[[dipyridine-mercury(II)]-μ-5-amino-2,4,6-triiodo-isophthalato].

Authors:  Yu Zhang; Jianying Zhao; Guodong Tang; Zhengjing Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-27

5.  5-Amino-2,4,6-triiodo-isophthalic acid monohydrate.

Authors:  Tobias Beck; George M Sheldrick
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.