Literature DB >> 21202714

(E)-4-(Benz-yloxy)benzaldehyde thio-semicarbazone.

M T H Tarafder, M A A A A Islam, K A Crouse, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title compound, C(15)H(15)N(3)OS, the thio-semicarbazone group adopts an E configuration with respect to the C=N bond. The benzaldehyde thio-semicarbazone fragment is almost planar [maximum deviation = 0.012 (1) Å], while the dihedral angle between the benz-yloxy and phenyl rings is 72.48 (5)°. In the crystal structure, mol-ecules are inter-connected by N-H⋯N and N-H⋯S hydrogen bonds, forming a two-dimensional network parallel to the bc plane and are further stacked along the a axis by π-π inter-actions [centroid-centroid separation 3.9043 (7) Å]. The crystal structure is also stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21202714      PMCID: PMC2961576          DOI: 10.1107/S1600536808012671

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures of thio­semicarbazones, see, for example: John et al. (2003 ▶); Joseph et al. (2004 ▶). For applications and bioactivities of thio­semicarbazones, see, for example: Al-Awadi et al. (2008 ▶); Amoedo et al. (2006 ▶); Chandra et al., (2001 ▶); Demertzi et al. (2007 ▶); Kizilcikli et al. (2004 ▶); Mirsha et al. (2006 ▶); Offiong & Martelli (1997 ▶); Sing et al. (2001 ▶).

Experimental

Crystal data

C15H15N3OS M = 285.37 Monoclinic, a = 11.0269 (1) Å b = 12.6668 (2) Å c = 10.8774 (1) Å β = 116.099 (1)° V = 1364.39 (3) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 100.0 (1) K 0.42 × 0.31 × 0.23 mm

Data collection

Bruker SMART APEX2 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.792, T max = 0.947 20710 measured reflections 3983 independent reflections 3517 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.03 3983 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 ; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808012671/sj2492sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012671/sj2492Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N3OSF000 = 600
Mr = 285.37Dx = 1.389 Mg m3
Monoclinic, P21/cMelting point: 446 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 11.0269 (1) ÅCell parameters from 3983 reflections
b = 12.6668 (2) Åθ = 2.1–30.0º
c = 10.8774 (1) ŵ = 0.24 mm1
β = 116.099 (1)ºT = 100.0 (1) K
V = 1364.39 (3) Å3Block, colorless
Z = 40.42 × 0.31 × 0.23 mm
Bruker SMART APEX2 CCD area-detector diffractometer3983 independent reflections
Radiation source: fine-focus sealed tube3517 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.027
Detector resolution: 8.33 pixels mm-1θmax = 30.0º
T = 100.0(1) Kθmin = 2.1º
ω scansh = −15→14
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −17→17
Tmin = 0.792, Tmax = 0.947l = −15→14
20710 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.096  w = 1/[σ2(Fo2) + (0.0529P)2 + 0.4873P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3983 reflectionsΔρmax = 0.48 e Å3
193 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.13297 (3)0.13427 (2)0.97645 (3)0.01819 (8)
O10.32553 (8)0.07638 (6)0.33345 (8)0.01820 (17)
N10.04289 (10)0.10009 (8)0.73443 (9)0.01734 (18)
N20.00675 (10)0.08433 (8)0.83961 (9)0.01797 (19)
N3−0.13647 (10)0.22436 (8)0.75438 (10)0.01930 (19)
C10.44624 (11)0.26954 (9)0.20175 (11)0.0185 (2)
H1A0.43990.31770.26320.022*
C20.53207 (12)0.29079 (9)0.14214 (11)0.0190 (2)
H2A0.58350.35220.16450.023*
C30.54055 (12)0.21970 (9)0.04895 (11)0.0196 (2)
H3A0.59730.23340.00810.024*
C40.46359 (13)0.12808 (9)0.01727 (12)0.0214 (2)
H4A0.46850.0808−0.04580.026*
C50.37939 (12)0.10629 (9)0.07858 (11)0.0206 (2)
H5A0.32950.04410.05770.025*
C60.36955 (11)0.17766 (9)0.17140 (11)0.0174 (2)
C70.27374 (12)0.16007 (10)0.23367 (11)0.0203 (2)
H7A0.26470.22440.27740.024*
H7B0.18530.14100.16300.024*
C80.26799 (11)0.06651 (8)0.42162 (10)0.0158 (2)
C90.32639 (11)−0.00843 (9)0.52540 (11)0.0178 (2)
H9A0.3968−0.05070.52880.021*
C100.27868 (12)−0.01940 (9)0.62342 (11)0.0177 (2)
H10A0.3173−0.06960.69220.021*
C110.17333 (11)0.04386 (8)0.62022 (10)0.0160 (2)
C120.11361 (11)0.11615 (9)0.51313 (11)0.0168 (2)
H12A0.04190.15740.50840.020*
C130.15942 (11)0.12737 (9)0.41392 (11)0.0170 (2)
H13A0.11810.17520.34260.020*
C140.12869 (11)0.03475 (9)0.72786 (11)0.0175 (2)
H14A0.1629−0.01900.79230.021*
C15−0.08583 (11)0.14858 (8)0.84847 (11)0.0156 (2)
H1N20.0392 (16)0.0301 (13)0.8951 (16)0.025 (4)*
H1N3−0.1132 (17)0.2256 (13)0.6853 (18)0.031 (4)*
H2N3−0.1995 (18)0.2624 (14)0.7562 (17)0.030 (4)*
U11U22U33U12U13U23
S10.02249 (15)0.01892 (14)0.01894 (14)0.00132 (10)0.01441 (11)0.00114 (9)
O10.0202 (4)0.0215 (4)0.0181 (3)0.0037 (3)0.0132 (3)0.0039 (3)
N10.0192 (5)0.0209 (4)0.0157 (4)−0.0012 (3)0.0111 (4)0.0006 (3)
N20.0217 (5)0.0200 (4)0.0176 (4)0.0032 (4)0.0136 (4)0.0035 (3)
N30.0189 (5)0.0224 (5)0.0197 (4)0.0039 (4)0.0114 (4)0.0045 (4)
C10.0198 (5)0.0211 (5)0.0152 (4)0.0028 (4)0.0082 (4)0.0004 (4)
C20.0184 (5)0.0208 (5)0.0170 (5)−0.0012 (4)0.0070 (4)0.0012 (4)
C30.0204 (5)0.0239 (5)0.0176 (5)0.0023 (4)0.0112 (4)0.0042 (4)
C40.0292 (6)0.0210 (5)0.0186 (5)0.0021 (4)0.0147 (5)0.0004 (4)
C50.0253 (6)0.0196 (5)0.0191 (5)−0.0028 (4)0.0118 (4)0.0004 (4)
C60.0167 (5)0.0224 (5)0.0144 (4)0.0029 (4)0.0079 (4)0.0038 (4)
C70.0182 (5)0.0272 (6)0.0185 (5)0.0041 (4)0.0107 (4)0.0064 (4)
C80.0163 (5)0.0182 (5)0.0155 (4)−0.0017 (4)0.0095 (4)−0.0013 (4)
C90.0194 (5)0.0174 (5)0.0202 (5)0.0021 (4)0.0121 (4)0.0007 (4)
C100.0205 (5)0.0170 (5)0.0185 (5)0.0014 (4)0.0111 (4)0.0021 (4)
C110.0177 (5)0.0170 (5)0.0158 (4)−0.0014 (4)0.0097 (4)−0.0011 (4)
C120.0151 (5)0.0206 (5)0.0163 (5)0.0010 (4)0.0083 (4)0.0001 (4)
C130.0157 (5)0.0210 (5)0.0152 (4)0.0017 (4)0.0077 (4)0.0021 (4)
C140.0200 (5)0.0181 (5)0.0171 (4)−0.0004 (4)0.0106 (4)0.0011 (4)
C150.0146 (5)0.0173 (5)0.0160 (4)−0.0024 (4)0.0078 (4)−0.0010 (4)
S1—C151.6964 (11)C4—H4A0.9300
O1—C81.3688 (12)C5—C61.3946 (15)
O1—C71.4430 (13)C5—H5A0.9300
N1—C141.2826 (14)C6—C71.5014 (15)
N1—N21.3815 (12)C7—H7A0.9700
N2—C151.3417 (14)C7—H7B0.9700
N2—H1N20.880 (17)C8—C131.3950 (15)
N3—C151.3335 (14)C8—C91.3966 (15)
N3—H1N30.894 (17)C9—C101.3879 (14)
N3—H2N30.853 (18)C9—H9A0.9300
C1—C21.3886 (15)C10—C111.3990 (15)
C1—C61.3903 (16)C10—H10A0.9300
C1—H1A0.9300C11—C121.3979 (15)
C2—C31.3894 (15)C11—C141.4606 (14)
C2—H2A0.9300C12—C131.3856 (14)
C3—C41.3887 (16)C12—H12A0.9300
C3—H3A0.9300C13—H13A0.9300
C4—C51.3884 (16)C14—H14A0.9300
C8—O1—C7116.23 (8)C6—C7—H7A109.9
C14—N1—N2116.20 (9)O1—C7—H7B109.9
C15—N2—N1118.53 (9)C6—C7—H7B109.9
C15—N2—H1N2121.1 (10)H7A—C7—H7B108.3
N1—N2—H1N2120.2 (10)O1—C8—C13123.89 (9)
C15—N3—H1N3118.6 (11)O1—C8—C9115.94 (9)
C15—N3—H2N3117.4 (11)C13—C8—C9120.16 (9)
H1N3—N3—H2N3123.1 (15)C10—C9—C8119.55 (10)
C2—C1—C6121.31 (10)C10—C9—H9A120.2
C2—C1—H1A119.3C8—C9—H9A120.2
C6—C1—H1A119.3C9—C10—C11120.98 (10)
C1—C2—C3119.57 (11)C9—C10—H10A119.5
C1—C2—H2A120.2C11—C10—H10A119.5
C3—C2—H2A120.2C12—C11—C10118.52 (9)
C4—C3—C2119.52 (10)C12—C11—C14121.22 (10)
C4—C3—H3A120.2C10—C11—C14120.25 (10)
C2—C3—H3A120.2C13—C12—C11121.11 (10)
C5—C4—C3120.78 (10)C13—C12—H12A119.4
C5—C4—H4A119.6C11—C12—H12A119.4
C3—C4—H4A119.6C12—C13—C8119.60 (10)
C4—C5—C6120.02 (11)C12—C13—H13A120.2
C4—C5—H5A120.0C8—C13—H13A120.2
C6—C5—H5A120.0N1—C14—C11120.71 (10)
C1—C6—C5118.79 (10)N1—C14—H14A119.6
C1—C6—C7119.49 (10)C11—C14—H14A119.6
C5—C6—C7121.65 (10)N3—C15—N2117.16 (9)
O1—C7—C6108.91 (9)N3—C15—S1122.05 (8)
O1—C7—H7A109.9N2—C15—S1120.78 (8)
C14—N1—N2—C15−177.98 (10)C13—C8—C9—C10−2.17 (16)
C6—C1—C2—C30.83 (17)C8—C9—C10—C11−0.31 (17)
C1—C2—C3—C4−0.35 (17)C9—C10—C11—C122.21 (16)
C2—C3—C4—C5−0.62 (18)C9—C10—C11—C14−177.07 (10)
C3—C4—C5—C61.13 (18)C10—C11—C12—C13−1.66 (16)
C2—C1—C6—C5−0.32 (16)C14—C11—C12—C13177.61 (10)
C2—C1—C6—C7−177.44 (10)C11—C12—C13—C8−0.77 (17)
C4—C5—C6—C1−0.65 (17)O1—C8—C13—C12−175.94 (10)
C4—C5—C6—C7176.40 (11)C9—C8—C13—C122.71 (16)
C8—O1—C7—C6165.49 (9)N2—N1—C14—C11179.67 (9)
C1—C6—C7—O1−109.78 (11)C12—C11—C14—N1−7.05 (17)
C5—C6—C7—O173.19 (13)C10—C11—C14—N1172.21 (10)
C7—O1—C8—C134.11 (15)N1—N2—C15—N3−0.34 (15)
C7—O1—C8—C9−174.59 (10)N1—N2—C15—S1−179.21 (8)
O1—C8—C9—C10176.58 (10)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···S1i0.880 (16)2.467 (16)3.3403 (10)171.9 (14)
N3—H1N3···N10.895 (19)2.229 (18)2.6104 (16)105.2 (13)
N3—H1N3···S1ii0.895 (19)2.815 (17)3.5285 (11)137.7 (14)
C10—H10A···Cg1iii0.932.973.8325 (13)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯S1i0.880 (16)2.467 (16)3.3403 (10)171.9 (14)
N3—H1N3⋯N10.895 (19)2.229 (18)2.6104 (16)105.2 (13)
N3—H1N3⋯S1ii0.895 (19)2.815 (17)3.5285 (11)137.7 (14)
C10—H10ACg1iii0.932.973.8325 (13)154

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the the C1–C6 ring.

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