| Literature DB >> 21202714 |
M T H Tarafder, M A A A A Islam, K A Crouse, Suchada Chantrapromma, Hoong-Kun Fun.
Abstract
In the title compound, C(15)H(15)N(3)OS, the thio-semicarbazone group adopts an E configuration with respect to the C=N bond. The benzaldehyde thio-semicarbazone fragment is almost planar [maximum deviation = 0.012 (1) Å], while the dihedral angle between the benz-yloxy and phenyl rings is 72.48 (5)°. In the crystal structure, mol-ecules are inter-connected by N-H⋯N and N-H⋯S hydrogen bonds, forming a two-dimensional network parallel to the bc plane and are further stacked along the a axis by π-π inter-actions [centroid-centroid separation 3.9043 (7) Å]. The crystal structure is also stabilized by C-H⋯π inter-actions.Entities:
Year: 2008 PMID: 21202714 PMCID: PMC2961576 DOI: 10.1107/S1600536808012671
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H15N3OS | |
| Monoclinic, | Melting point: 446 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 3983 reflections | |
| θ = 2.1–30.0º | |
| µ = 0.24 mm−1 | |
| β = 116.099 (1)º | |
| Block, colorless | |
| 0.42 × 0.31 × 0.23 mm |
| Bruker SMART APEX2 CCD area-detector diffractometer | 3983 independent reflections |
| Radiation source: fine-focus sealed tube | 3517 reflections with |
| Monochromator: graphite | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 30.0º |
| θmin = 2.1º | |
| ω scans | |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | |
| 20710 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 3983 reflections | Δρmax = 0.48 e Å−3 |
| 193 parameters | Δρmin = −0.18 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | −0.13297 (3) | 0.13427 (2) | 0.97645 (3) | 0.01819 (8) | |
| O1 | 0.32553 (8) | 0.07638 (6) | 0.33345 (8) | 0.01820 (17) | |
| N1 | 0.04289 (10) | 0.10009 (8) | 0.73443 (9) | 0.01734 (18) | |
| N2 | 0.00675 (10) | 0.08433 (8) | 0.83961 (9) | 0.01797 (19) | |
| N3 | −0.13647 (10) | 0.22436 (8) | 0.75438 (10) | 0.01930 (19) | |
| C1 | 0.44624 (11) | 0.26954 (9) | 0.20175 (11) | 0.0185 (2) | |
| H1A | 0.4399 | 0.3177 | 0.2632 | 0.022* | |
| C2 | 0.53207 (12) | 0.29079 (9) | 0.14214 (11) | 0.0190 (2) | |
| H2A | 0.5835 | 0.3522 | 0.1645 | 0.023* | |
| C3 | 0.54055 (12) | 0.21970 (9) | 0.04895 (11) | 0.0196 (2) | |
| H3A | 0.5973 | 0.2334 | 0.0081 | 0.024* | |
| C4 | 0.46359 (13) | 0.12808 (9) | 0.01727 (12) | 0.0214 (2) | |
| H4A | 0.4685 | 0.0808 | −0.0458 | 0.026* | |
| C5 | 0.37939 (12) | 0.10629 (9) | 0.07858 (11) | 0.0206 (2) | |
| H5A | 0.3295 | 0.0441 | 0.0577 | 0.025* | |
| C6 | 0.36955 (11) | 0.17766 (9) | 0.17140 (11) | 0.0174 (2) | |
| C7 | 0.27374 (12) | 0.16007 (10) | 0.23367 (11) | 0.0203 (2) | |
| H7A | 0.2647 | 0.2244 | 0.2774 | 0.024* | |
| H7B | 0.1853 | 0.1410 | 0.1630 | 0.024* | |
| C8 | 0.26799 (11) | 0.06651 (8) | 0.42162 (10) | 0.0158 (2) | |
| C9 | 0.32639 (11) | −0.00843 (9) | 0.52540 (11) | 0.0178 (2) | |
| H9A | 0.3968 | −0.0507 | 0.5288 | 0.021* | |
| C10 | 0.27868 (12) | −0.01940 (9) | 0.62342 (11) | 0.0177 (2) | |
| H10A | 0.3173 | −0.0696 | 0.6922 | 0.021* | |
| C11 | 0.17333 (11) | 0.04386 (8) | 0.62022 (10) | 0.0160 (2) | |
| C12 | 0.11361 (11) | 0.11615 (9) | 0.51313 (11) | 0.0168 (2) | |
| H12A | 0.0419 | 0.1574 | 0.5084 | 0.020* | |
| C13 | 0.15942 (11) | 0.12737 (9) | 0.41392 (11) | 0.0170 (2) | |
| H13A | 0.1181 | 0.1752 | 0.3426 | 0.020* | |
| C14 | 0.12869 (11) | 0.03475 (9) | 0.72786 (11) | 0.0175 (2) | |
| H14A | 0.1629 | −0.0190 | 0.7923 | 0.021* | |
| C15 | −0.08583 (11) | 0.14858 (8) | 0.84847 (11) | 0.0156 (2) | |
| H1N2 | 0.0392 (16) | 0.0301 (13) | 0.8951 (16) | 0.025 (4)* | |
| H1N3 | −0.1132 (17) | 0.2256 (13) | 0.6853 (18) | 0.031 (4)* | |
| H2N3 | −0.1995 (18) | 0.2624 (14) | 0.7562 (17) | 0.030 (4)* |
| S1 | 0.02249 (15) | 0.01892 (14) | 0.01894 (14) | 0.00132 (10) | 0.01441 (11) | 0.00114 (9) |
| O1 | 0.0202 (4) | 0.0215 (4) | 0.0181 (3) | 0.0037 (3) | 0.0132 (3) | 0.0039 (3) |
| N1 | 0.0192 (5) | 0.0209 (4) | 0.0157 (4) | −0.0012 (3) | 0.0111 (4) | 0.0006 (3) |
| N2 | 0.0217 (5) | 0.0200 (4) | 0.0176 (4) | 0.0032 (4) | 0.0136 (4) | 0.0035 (3) |
| N3 | 0.0189 (5) | 0.0224 (5) | 0.0197 (4) | 0.0039 (4) | 0.0114 (4) | 0.0045 (4) |
| C1 | 0.0198 (5) | 0.0211 (5) | 0.0152 (4) | 0.0028 (4) | 0.0082 (4) | 0.0004 (4) |
| C2 | 0.0184 (5) | 0.0208 (5) | 0.0170 (5) | −0.0012 (4) | 0.0070 (4) | 0.0012 (4) |
| C3 | 0.0204 (5) | 0.0239 (5) | 0.0176 (5) | 0.0023 (4) | 0.0112 (4) | 0.0042 (4) |
| C4 | 0.0292 (6) | 0.0210 (5) | 0.0186 (5) | 0.0021 (4) | 0.0147 (5) | 0.0004 (4) |
| C5 | 0.0253 (6) | 0.0196 (5) | 0.0191 (5) | −0.0028 (4) | 0.0118 (4) | 0.0004 (4) |
| C6 | 0.0167 (5) | 0.0224 (5) | 0.0144 (4) | 0.0029 (4) | 0.0079 (4) | 0.0038 (4) |
| C7 | 0.0182 (5) | 0.0272 (6) | 0.0185 (5) | 0.0041 (4) | 0.0107 (4) | 0.0064 (4) |
| C8 | 0.0163 (5) | 0.0182 (5) | 0.0155 (4) | −0.0017 (4) | 0.0095 (4) | −0.0013 (4) |
| C9 | 0.0194 (5) | 0.0174 (5) | 0.0202 (5) | 0.0021 (4) | 0.0121 (4) | 0.0007 (4) |
| C10 | 0.0205 (5) | 0.0170 (5) | 0.0185 (5) | 0.0014 (4) | 0.0111 (4) | 0.0021 (4) |
| C11 | 0.0177 (5) | 0.0170 (5) | 0.0158 (4) | −0.0014 (4) | 0.0097 (4) | −0.0011 (4) |
| C12 | 0.0151 (5) | 0.0206 (5) | 0.0163 (5) | 0.0010 (4) | 0.0083 (4) | 0.0001 (4) |
| C13 | 0.0157 (5) | 0.0210 (5) | 0.0152 (4) | 0.0017 (4) | 0.0077 (4) | 0.0021 (4) |
| C14 | 0.0200 (5) | 0.0181 (5) | 0.0171 (4) | −0.0004 (4) | 0.0106 (4) | 0.0011 (4) |
| C15 | 0.0146 (5) | 0.0173 (5) | 0.0160 (4) | −0.0024 (4) | 0.0078 (4) | −0.0010 (4) |
| S1—C15 | 1.6964 (11) | C4—H4A | 0.9300 |
| O1—C8 | 1.3688 (12) | C5—C6 | 1.3946 (15) |
| O1—C7 | 1.4430 (13) | C5—H5A | 0.9300 |
| N1—C14 | 1.2826 (14) | C6—C7 | 1.5014 (15) |
| N1—N2 | 1.3815 (12) | C7—H7A | 0.9700 |
| N2—C15 | 1.3417 (14) | C7—H7B | 0.9700 |
| N2—H1N2 | 0.880 (17) | C8—C13 | 1.3950 (15) |
| N3—C15 | 1.3335 (14) | C8—C9 | 1.3966 (15) |
| N3—H1N3 | 0.894 (17) | C9—C10 | 1.3879 (14) |
| N3—H2N3 | 0.853 (18) | C9—H9A | 0.9300 |
| C1—C2 | 1.3886 (15) | C10—C11 | 1.3990 (15) |
| C1—C6 | 1.3903 (16) | C10—H10A | 0.9300 |
| C1—H1A | 0.9300 | C11—C12 | 1.3979 (15) |
| C2—C3 | 1.3894 (15) | C11—C14 | 1.4606 (14) |
| C2—H2A | 0.9300 | C12—C13 | 1.3856 (14) |
| C3—C4 | 1.3887 (16) | C12—H12A | 0.9300 |
| C3—H3A | 0.9300 | C13—H13A | 0.9300 |
| C4—C5 | 1.3884 (16) | C14—H14A | 0.9300 |
| C8—O1—C7 | 116.23 (8) | C6—C7—H7A | 109.9 |
| C14—N1—N2 | 116.20 (9) | O1—C7—H7B | 109.9 |
| C15—N2—N1 | 118.53 (9) | C6—C7—H7B | 109.9 |
| C15—N2—H1N2 | 121.1 (10) | H7A—C7—H7B | 108.3 |
| N1—N2—H1N2 | 120.2 (10) | O1—C8—C13 | 123.89 (9) |
| C15—N3—H1N3 | 118.6 (11) | O1—C8—C9 | 115.94 (9) |
| C15—N3—H2N3 | 117.4 (11) | C13—C8—C9 | 120.16 (9) |
| H1N3—N3—H2N3 | 123.1 (15) | C10—C9—C8 | 119.55 (10) |
| C2—C1—C6 | 121.31 (10) | C10—C9—H9A | 120.2 |
| C2—C1—H1A | 119.3 | C8—C9—H9A | 120.2 |
| C6—C1—H1A | 119.3 | C9—C10—C11 | 120.98 (10) |
| C1—C2—C3 | 119.57 (11) | C9—C10—H10A | 119.5 |
| C1—C2—H2A | 120.2 | C11—C10—H10A | 119.5 |
| C3—C2—H2A | 120.2 | C12—C11—C10 | 118.52 (9) |
| C4—C3—C2 | 119.52 (10) | C12—C11—C14 | 121.22 (10) |
| C4—C3—H3A | 120.2 | C10—C11—C14 | 120.25 (10) |
| C2—C3—H3A | 120.2 | C13—C12—C11 | 121.11 (10) |
| C5—C4—C3 | 120.78 (10) | C13—C12—H12A | 119.4 |
| C5—C4—H4A | 119.6 | C11—C12—H12A | 119.4 |
| C3—C4—H4A | 119.6 | C12—C13—C8 | 119.60 (10) |
| C4—C5—C6 | 120.02 (11) | C12—C13—H13A | 120.2 |
| C4—C5—H5A | 120.0 | C8—C13—H13A | 120.2 |
| C6—C5—H5A | 120.0 | N1—C14—C11 | 120.71 (10) |
| C1—C6—C5 | 118.79 (10) | N1—C14—H14A | 119.6 |
| C1—C6—C7 | 119.49 (10) | C11—C14—H14A | 119.6 |
| C5—C6—C7 | 121.65 (10) | N3—C15—N2 | 117.16 (9) |
| O1—C7—C6 | 108.91 (9) | N3—C15—S1 | 122.05 (8) |
| O1—C7—H7A | 109.9 | N2—C15—S1 | 120.78 (8) |
| C14—N1—N2—C15 | −177.98 (10) | C13—C8—C9—C10 | −2.17 (16) |
| C6—C1—C2—C3 | 0.83 (17) | C8—C9—C10—C11 | −0.31 (17) |
| C1—C2—C3—C4 | −0.35 (17) | C9—C10—C11—C12 | 2.21 (16) |
| C2—C3—C4—C5 | −0.62 (18) | C9—C10—C11—C14 | −177.07 (10) |
| C3—C4—C5—C6 | 1.13 (18) | C10—C11—C12—C13 | −1.66 (16) |
| C2—C1—C6—C5 | −0.32 (16) | C14—C11—C12—C13 | 177.61 (10) |
| C2—C1—C6—C7 | −177.44 (10) | C11—C12—C13—C8 | −0.77 (17) |
| C4—C5—C6—C1 | −0.65 (17) | O1—C8—C13—C12 | −175.94 (10) |
| C4—C5—C6—C7 | 176.40 (11) | C9—C8—C13—C12 | 2.71 (16) |
| C8—O1—C7—C6 | 165.49 (9) | N2—N1—C14—C11 | 179.67 (9) |
| C1—C6—C7—O1 | −109.78 (11) | C12—C11—C14—N1 | −7.05 (17) |
| C5—C6—C7—O1 | 73.19 (13) | C10—C11—C14—N1 | 172.21 (10) |
| C7—O1—C8—C13 | 4.11 (15) | N1—N2—C15—N3 | −0.34 (15) |
| C7—O1—C8—C9 | −174.59 (10) | N1—N2—C15—S1 | −179.21 (8) |
| O1—C8—C9—C10 | 176.58 (10) |
| H··· | ||||
| N2—H1N2···S1i | 0.880 (16) | 2.467 (16) | 3.3403 (10) | 171.9 (14) |
| N3—H1N3···N1 | 0.895 (19) | 2.229 (18) | 2.6104 (16) | 105.2 (13) |
| N3—H1N3···S1ii | 0.895 (19) | 2.815 (17) | 3.5285 (11) | 137.7 (14) |
| C10—H10A···Cg1iii | 0.93 | 2.97 | 3.8325 (13) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.880 (16) | 2.467 (16) | 3.3403 (10) | 171.9 (14) |
| N3—H1 | 0.895 (19) | 2.229 (18) | 2.6104 (16) | 105.2 (13) |
| N3—H1 | 0.895 (19) | 2.815 (17) | 3.5285 (11) | 137.7 (14) |
| C10—H10 | 0.93 | 2.97 | 3.8325 (13) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the the C1–C6 ring.