| Literature DB >> 21522787 |
Abstract
In the crystal of the title compound, C(9)H(9)ClFN(3)S, the molecules are inter-connected by N-H⋯S and N-H⋯F hydrogen bonds. There are two different N-H⋯S hydrogen bond: the stronger one links mol-ecules into infinite chains along the b axis with graph-set motif C(4), while the weaker N-H⋯S hydrogen bond combines with the previous one into an R(2) (2)(8) network. Moreover, the chains are linked into layers parallel to (102) by weak N-H⋯F hydrogen bonds, which form an R(2) (2)(22) ring motif. In addition, there are also weak π-π inter-actions between the benzene rings of adjacent mol-ecules [centroid-centroid distance = 3.8997 (15) Å].Entities:
Year: 2010 PMID: 21522787 PMCID: PMC3050128 DOI: 10.1107/S1600536810051093
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9ClFN3S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3779 reflections |
| θ = 2.4–28.2° | |
| µ = 0.52 mm−1 | |
| β = 112.244 (4)° | Block, colorless |
| 0.15 × 0.12 × 0.10 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2379 independent reflections |
| Radiation source: fine-focus sealed tube | 2069 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 6461 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 2379 reflections | (Δ/σ)max < 0.001 |
| 137 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 1.35789 (9) | 0.14464 (12) | 0.01370 (4) | 0.0767 (3) | |
| S1 | 0.48566 (10) | 0.45517 (7) | 0.27045 (4) | 0.0579 (2) | |
| F1 | 1.0826 (2) | 0.3057 (2) | −0.11859 (9) | 0.0675 (4) | |
| N3 | 0.7524 (2) | 0.3397 (2) | 0.13785 (10) | 0.0416 (4) | |
| N2 | 0.6771 (3) | 0.3277 (2) | 0.19401 (10) | 0.0412 (4) | |
| H2 | 0.6824 | 0.2389 | 0.2192 | 0.049* | |
| N1 | 0.6073 (3) | 0.5950 (2) | 0.17163 (12) | 0.0524 (5) | |
| H1A | 0.6662 | 0.5951 | 0.1406 | 0.063* | |
| H1B | 0.5564 | 0.6827 | 0.1790 | 0.063* | |
| C3 | 0.9182 (3) | 0.2442 (2) | 0.06572 (12) | 0.0399 (4) | |
| C2 | 0.8562 (3) | 0.2247 (2) | 0.13192 (12) | 0.0392 (4) | |
| C8 | 0.8048 (3) | 0.3213 (3) | −0.00227 (13) | 0.0484 (5) | |
| H8 | 0.6901 | 0.3597 | −0.0059 | 0.058* | |
| C7 | 0.8590 (4) | 0.3422 (3) | −0.06482 (14) | 0.0525 (6) | |
| H7 | 0.7820 | 0.3930 | −0.1105 | 0.063* | |
| C6 | 1.0288 (3) | 0.2858 (3) | −0.05752 (13) | 0.0476 (5) | |
| C5 | 1.1441 (3) | 0.2103 (3) | 0.00803 (14) | 0.0462 (5) | |
| C4 | 1.0893 (3) | 0.1874 (3) | 0.07075 (13) | 0.0441 (5) | |
| H4 | 1.1667 | 0.1345 | 0.1157 | 0.053* | |
| C1 | 0.5950 (3) | 0.4612 (2) | 0.20768 (12) | 0.0394 (4) | |
| C9 | 0.9087 (4) | 0.0788 (3) | 0.18293 (15) | 0.0576 (6) | |
| H9A | 0.9228 | 0.1080 | 0.2352 | 0.086* | |
| H9B | 1.0232 | 0.0362 | 0.1832 | 0.086* | |
| H9C | 0.8139 | −0.0020 | 0.1632 | 0.086* |
| Cl1 | 0.0482 (4) | 0.1172 (7) | 0.0786 (5) | 0.0102 (3) | 0.0398 (3) | −0.0058 (4) |
| S1 | 0.0888 (5) | 0.0384 (3) | 0.0771 (4) | 0.0073 (3) | 0.0662 (4) | 0.0041 (2) |
| F1 | 0.0798 (10) | 0.0817 (10) | 0.0629 (9) | −0.0066 (8) | 0.0519 (8) | 0.0007 (8) |
| N3 | 0.0465 (10) | 0.0413 (9) | 0.0478 (9) | 0.0002 (7) | 0.0301 (8) | −0.0025 (7) |
| N2 | 0.0518 (10) | 0.0363 (8) | 0.0485 (9) | 0.0031 (7) | 0.0336 (8) | 0.0005 (7) |
| N1 | 0.0665 (12) | 0.0402 (9) | 0.0728 (13) | 0.0084 (9) | 0.0515 (11) | 0.0074 (9) |
| C3 | 0.0403 (10) | 0.0401 (10) | 0.0458 (10) | −0.0019 (8) | 0.0235 (9) | −0.0053 (8) |
| C2 | 0.0367 (10) | 0.0430 (10) | 0.0430 (10) | −0.0013 (8) | 0.0210 (8) | −0.0059 (8) |
| C8 | 0.0451 (11) | 0.0575 (13) | 0.0495 (12) | 0.0048 (10) | 0.0260 (10) | 0.0009 (10) |
| C7 | 0.0553 (13) | 0.0600 (14) | 0.0465 (12) | 0.0028 (11) | 0.0244 (10) | 0.0039 (10) |
| C6 | 0.0557 (13) | 0.0503 (12) | 0.0493 (12) | −0.0102 (10) | 0.0340 (10) | −0.0075 (9) |
| C5 | 0.0403 (11) | 0.0521 (12) | 0.0551 (12) | −0.0047 (9) | 0.0282 (10) | −0.0112 (10) |
| C4 | 0.0407 (11) | 0.0513 (12) | 0.0455 (11) | 0.0016 (9) | 0.0220 (9) | −0.0036 (9) |
| C1 | 0.0415 (10) | 0.0389 (10) | 0.0457 (10) | 0.0004 (8) | 0.0255 (9) | −0.0017 (8) |
| C9 | 0.0665 (15) | 0.0605 (14) | 0.0584 (14) | 0.0217 (12) | 0.0379 (12) | 0.0113 (11) |
| Cl1—C5 | 1.723 (2) | C3—C2 | 1.484 (3) |
| S1—C1 | 1.681 (2) | C2—C9 | 1.486 (3) |
| F1—C6 | 1.354 (2) | C8—C7 | 1.383 (3) |
| N3—C2 | 1.279 (3) | C8—H8 | 0.9300 |
| N3—N2 | 1.376 (2) | C7—C6 | 1.365 (3) |
| N2—C1 | 1.345 (2) | C7—H7 | 0.9300 |
| N2—H2 | 0.8600 | C6—C5 | 1.356 (3) |
| N1—C1 | 1.310 (3) | C5—C4 | 1.391 (3) |
| N1—H1A | 0.8600 | C4—H4 | 0.9300 |
| N1—H1B | 0.8600 | C9—H9A | 0.9600 |
| C3—C8 | 1.386 (3) | C9—H9B | 0.9600 |
| C3—C4 | 1.387 (3) | C9—H9C | 0.9600 |
| C2—N3—N2 | 118.55 (17) | F1—C6—C5 | 119.1 (2) |
| C1—N2—N3 | 116.98 (16) | F1—C6—C7 | 118.3 (2) |
| C1—N2—H2 | 121.5 | C5—C6—C7 | 122.5 (2) |
| N3—N2—H2 | 121.5 | C6—C5—C4 | 119.6 (2) |
| C1—N1—H1A | 120.0 | C6—C5—Cl1 | 120.06 (17) |
| C1—N1—H1B | 120.0 | C4—C5—Cl1 | 120.32 (18) |
| H1A—N1—H1B | 120.0 | C3—C4—C5 | 119.5 (2) |
| C8—C3—C4 | 119.05 (19) | C3—C4—H4 | 120.3 |
| C8—C3—C2 | 119.89 (18) | C5—C4—H4 | 120.3 |
| C4—C3—C2 | 121.06 (19) | N1—C1—N2 | 117.44 (18) |
| N3—C2—C3 | 113.97 (18) | N1—C1—S1 | 121.95 (15) |
| N3—C2—C9 | 125.24 (19) | N2—C1—S1 | 120.60 (15) |
| C3—C2—C9 | 120.74 (17) | C2—C9—H9A | 109.5 |
| C7—C8—C3 | 121.3 (2) | C2—C9—H9B | 109.5 |
| C7—C8—H8 | 119.3 | H9A—C9—H9B | 109.5 |
| C3—C8—H8 | 119.3 | C2—C9—H9C | 109.5 |
| C6—C7—C8 | 118.0 (2) | H9A—C9—H9C | 109.5 |
| C6—C7—H7 | 121.0 | H9B—C9—H9C | 109.5 |
| C8—C7—H7 | 121.0 | ||
| C2—N3—N2—C1 | 169.12 (19) | C8—C7—C6—C5 | 0.4 (4) |
| N2—N3—C2—C3 | 175.60 (17) | F1—C6—C5—C4 | −179.2 (2) |
| N2—N3—C2—C9 | −2.1 (3) | C7—C6—C5—C4 | 0.3 (4) |
| C8—C3—C2—N3 | −31.7 (3) | F1—C6—C5—Cl1 | 1.3 (3) |
| C4—C3—C2—N3 | 147.8 (2) | C7—C6—C5—Cl1 | −179.13 (19) |
| C8—C3—C2—C9 | 146.0 (2) | C8—C3—C4—C5 | 0.6 (3) |
| C4—C3—C2—C9 | −34.4 (3) | C2—C3—C4—C5 | −178.9 (2) |
| C4—C3—C8—C7 | 0.1 (3) | C6—C5—C4—C3 | −0.8 (3) |
| C2—C3—C8—C7 | 179.6 (2) | Cl1—C5—C4—C3 | 178.62 (17) |
| C3—C8—C7—C6 | −0.6 (4) | N3—N2—C1—N1 | −5.8 (3) |
| C8—C7—C6—F1 | 179.9 (2) | N3—N2—C1—S1 | 175.61 (15) |
| H··· | ||||
| N1—H1B···S1i | 0.86 | 2.50 | 3.327 (2) | 161 |
| N2—H2···S1ii | 0.86 | 2.73 | 3.4817 (19) | 147 |
| N1—H1A···F1iii | 0.86 | 2.30 | 3.051 (2) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.50 | 3.327 (2) | 161 |
| N2—H2⋯S1ii | 0.86 | 2.73 | 3.4817 (19) | 147 |
| N1—H1 | 0.86 | 2.30 | 3.051 (2) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) .