Literature DB >> 21522787

(E)-2-[1-(3-Chloro-4-fluoro-phen-yl)ethyl-idene]hydrazinecarbothio-amide.

Xiu-Rong Zhai1.   

Abstract

In the crystal of the title compound, C(9)H(9)ClFN(3)S, the molecules are inter-connected by N-H⋯S and N-H⋯F hydrogen bonds. There are two different N-H⋯S hydrogen bond: the stronger one links mol-ecules into infinite chains along the b axis with graph-set motif C(4), while the weaker N-H⋯S hydrogen bond combines with the previous one into an R(2) (2)(8) network. Moreover, the chains are linked into layers parallel to (102) by weak N-H⋯F hydrogen bonds, which form an R(2) (2)(22) ring motif. In addition, there are also weak π-π inter-actions between the benzene rings of adjacent mol-ecules [centroid-centroid distance = 3.8997 (15) Å].

Entities:  

Year:  2010        PMID: 21522787      PMCID: PMC3050128          DOI: 10.1107/S1600536810051093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry and biological activity of thio­semi­carba­zones and their derivatives, see: Kasuga et al. (2001 ▶); Fonari et al. (2003 ▶); Amoedo et al. (2006 ▶); Mirsha et al. (2006 ▶); Kovala-Demertzi et al. 2007 ▶; Tarafder et al. (2008 ▶); Kizilcikli et al. (2004 ▶). For bond-length data, see: Allen et al. (1987 ▶). For graph-set theory, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C9H9ClFN3S M = 245.70 Monoclinic, a = 7.8226 (10) Å b = 8.2415 (12) Å c = 18.4582 (19) Å β = 112.244 (4)° V = 1101.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 296 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.926, T max = 0.950 6461 measured reflections 2379 independent reflections 2069 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.128 S = 1.06 2379 reflections 137 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810051093/fb2232sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051093/fb2232Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9ClFN3SF(000) = 504
Mr = 245.70Dx = 1.482 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3779 reflections
a = 7.8226 (10) Åθ = 2.4–28.2°
b = 8.2415 (12) ŵ = 0.52 mm1
c = 18.4582 (19) ÅT = 296 K
β = 112.244 (4)°Block, colorless
V = 1101.4 (2) Å30.15 × 0.12 × 0.10 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2379 independent reflections
Radiation source: fine-focus sealed tube2069 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→5
Tmin = 0.926, Tmax = 0.950k = −9→10
6461 measured reflectionsl = −20→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.128H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0639P)2 + 0.6228P] where P = (Fo2 + 2Fc2)/3
2379 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.35789 (9)0.14464 (12)0.01370 (4)0.0767 (3)
S10.48566 (10)0.45517 (7)0.27045 (4)0.0579 (2)
F11.0826 (2)0.3057 (2)−0.11859 (9)0.0675 (4)
N30.7524 (2)0.3397 (2)0.13785 (10)0.0416 (4)
N20.6771 (3)0.3277 (2)0.19401 (10)0.0412 (4)
H20.68240.23890.21920.049*
N10.6073 (3)0.5950 (2)0.17163 (12)0.0524 (5)
H1A0.66620.59510.14060.063*
H1B0.55640.68270.17900.063*
C30.9182 (3)0.2442 (2)0.06572 (12)0.0399 (4)
C20.8562 (3)0.2247 (2)0.13192 (12)0.0392 (4)
C80.8048 (3)0.3213 (3)−0.00227 (13)0.0484 (5)
H80.69010.3597−0.00590.058*
C70.8590 (4)0.3422 (3)−0.06482 (14)0.0525 (6)
H70.78200.3930−0.11050.063*
C61.0288 (3)0.2858 (3)−0.05752 (13)0.0476 (5)
C51.1441 (3)0.2103 (3)0.00803 (14)0.0462 (5)
C41.0893 (3)0.1874 (3)0.07075 (13)0.0441 (5)
H41.16670.13450.11570.053*
C10.5950 (3)0.4612 (2)0.20768 (12)0.0394 (4)
C90.9087 (4)0.0788 (3)0.18293 (15)0.0576 (6)
H9A0.92280.10800.23520.086*
H9B1.02320.03620.18320.086*
H9C0.8139−0.00200.16320.086*
U11U22U33U12U13U23
Cl10.0482 (4)0.1172 (7)0.0786 (5)0.0102 (3)0.0398 (3)−0.0058 (4)
S10.0888 (5)0.0384 (3)0.0771 (4)0.0073 (3)0.0662 (4)0.0041 (2)
F10.0798 (10)0.0817 (10)0.0629 (9)−0.0066 (8)0.0519 (8)0.0007 (8)
N30.0465 (10)0.0413 (9)0.0478 (9)0.0002 (7)0.0301 (8)−0.0025 (7)
N20.0518 (10)0.0363 (8)0.0485 (9)0.0031 (7)0.0336 (8)0.0005 (7)
N10.0665 (12)0.0402 (9)0.0728 (13)0.0084 (9)0.0515 (11)0.0074 (9)
C30.0403 (10)0.0401 (10)0.0458 (10)−0.0019 (8)0.0235 (9)−0.0053 (8)
C20.0367 (10)0.0430 (10)0.0430 (10)−0.0013 (8)0.0210 (8)−0.0059 (8)
C80.0451 (11)0.0575 (13)0.0495 (12)0.0048 (10)0.0260 (10)0.0009 (10)
C70.0553 (13)0.0600 (14)0.0465 (12)0.0028 (11)0.0244 (10)0.0039 (10)
C60.0557 (13)0.0503 (12)0.0493 (12)−0.0102 (10)0.0340 (10)−0.0075 (9)
C50.0403 (11)0.0521 (12)0.0551 (12)−0.0047 (9)0.0282 (10)−0.0112 (10)
C40.0407 (11)0.0513 (12)0.0455 (11)0.0016 (9)0.0220 (9)−0.0036 (9)
C10.0415 (10)0.0389 (10)0.0457 (10)0.0004 (8)0.0255 (9)−0.0017 (8)
C90.0665 (15)0.0605 (14)0.0584 (14)0.0217 (12)0.0379 (12)0.0113 (11)
Cl1—C51.723 (2)C3—C21.484 (3)
S1—C11.681 (2)C2—C91.486 (3)
F1—C61.354 (2)C8—C71.383 (3)
N3—C21.279 (3)C8—H80.9300
N3—N21.376 (2)C7—C61.365 (3)
N2—C11.345 (2)C7—H70.9300
N2—H20.8600C6—C51.356 (3)
N1—C11.310 (3)C5—C41.391 (3)
N1—H1A0.8600C4—H40.9300
N1—H1B0.8600C9—H9A0.9600
C3—C81.386 (3)C9—H9B0.9600
C3—C41.387 (3)C9—H9C0.9600
C2—N3—N2118.55 (17)F1—C6—C5119.1 (2)
C1—N2—N3116.98 (16)F1—C6—C7118.3 (2)
C1—N2—H2121.5C5—C6—C7122.5 (2)
N3—N2—H2121.5C6—C5—C4119.6 (2)
C1—N1—H1A120.0C6—C5—Cl1120.06 (17)
C1—N1—H1B120.0C4—C5—Cl1120.32 (18)
H1A—N1—H1B120.0C3—C4—C5119.5 (2)
C8—C3—C4119.05 (19)C3—C4—H4120.3
C8—C3—C2119.89 (18)C5—C4—H4120.3
C4—C3—C2121.06 (19)N1—C1—N2117.44 (18)
N3—C2—C3113.97 (18)N1—C1—S1121.95 (15)
N3—C2—C9125.24 (19)N2—C1—S1120.60 (15)
C3—C2—C9120.74 (17)C2—C9—H9A109.5
C7—C8—C3121.3 (2)C2—C9—H9B109.5
C7—C8—H8119.3H9A—C9—H9B109.5
C3—C8—H8119.3C2—C9—H9C109.5
C6—C7—C8118.0 (2)H9A—C9—H9C109.5
C6—C7—H7121.0H9B—C9—H9C109.5
C8—C7—H7121.0
C2—N3—N2—C1169.12 (19)C8—C7—C6—C50.4 (4)
N2—N3—C2—C3175.60 (17)F1—C6—C5—C4−179.2 (2)
N2—N3—C2—C9−2.1 (3)C7—C6—C5—C40.3 (4)
C8—C3—C2—N3−31.7 (3)F1—C6—C5—Cl11.3 (3)
C4—C3—C2—N3147.8 (2)C7—C6—C5—Cl1−179.13 (19)
C8—C3—C2—C9146.0 (2)C8—C3—C4—C50.6 (3)
C4—C3—C2—C9−34.4 (3)C2—C3—C4—C5−178.9 (2)
C4—C3—C8—C70.1 (3)C6—C5—C4—C3−0.8 (3)
C2—C3—C8—C7179.6 (2)Cl1—C5—C4—C3178.62 (17)
C3—C8—C7—C6−0.6 (4)N3—N2—C1—N1−5.8 (3)
C8—C7—C6—F1179.9 (2)N3—N2—C1—S1175.61 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1B···S1i0.862.503.327 (2)161
N2—H2···S1ii0.862.733.4817 (19)147
N1—H1A···F1iii0.862.303.051 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯S1i0.862.503.327 (2)161
N2—H2⋯S1ii0.862.733.4817 (19)147
N1—H1A⋯F1iii0.862.303.051 (2)146

Symmetry codes: (i) ; (ii) ; (iii) .

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