Literature DB >> 21580122

(E)-4-Octyloxybenzaldehyde thio-semicarbazone.

M A A A A Islam, M T H Tarafder, C M Zakaria, N Guidolin, E Zangrando.   

Abstract

In the title compound, C(16)H(25)N(3)n class="Chemical">OS, the thio-semicarbazone group adopts an E configuration with respect to the C=N bond and is almost coplanar with the benzene ring, forming a dihedral angle of 9.3 (1)°. In the crystal packing, the mol-ecules lie along the a axis in an anti-parallel arrangement and are held in place by van der Waals inter-actions. As a consequence, there is relatively low anisotropic thermal motion in the terminal atoms of the n-octyl chain.

Entities:  

Year:  2009        PMID: 21580122      PMCID: PMC2980035          DOI: 10.1107/S1600536809054841

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the related structures, see: Basuli et al. (2000 ▶); Narayana et al. (2007 ▶); Pal et al. (2002 ▶); Tian et al. (2002 ▶); Tarafder et al. (2008 ▶).

Experimental

Crystal data

C16H25N3OS M = 307.45 Triclinic, a = 5.785 (2) Å b = 7.586 (2) Å c = 20.789 (4) Å α = 94.74 (2)° β = 91.85 (2)° γ = 104.42 (3)° V = 879.2 (4) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 293 K 0.42 × 0.40 × 0.14 mm

Data collection

Enraf–Nonius dip1030 image-plate diffractometer 9930 measured reflections 3226 independent reflections 2749 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.140 S = 1.04 3226 reflections 191 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: XPRESS (MacScience, 2002 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DEn class="Chemical">NZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809054841/fj2264sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809054841/fj2264Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H25N3OSZ = 2
Mr = 307.45F(000) = 332
Triclinic, P1Dx = 1.161 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.785 (2) ÅCell parameters from 146 reflections
b = 7.586 (2) Åθ = 3.0–18.1°
c = 20.789 (4) ŵ = 0.19 mm1
α = 94.74 (2)°T = 293 K
β = 91.85 (2)°Plate, colorless
γ = 104.42 (3)°0.42 × 0.40 × 0.14 mm
V = 879.2 (4) Å3
Enraf–Nonius dip1030 image-plate diffractometer2749 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
graphiteθmax = 25.7°, θmin = 3.6°
φ–scans with narrow framesh = −7→7
9930 measured reflectionsk = −9→8
3226 independent reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1026P)2 + 0.0242P] where P = (Fo2 + 2Fc2)/3
3226 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.33919 (6)−0.29398 (5)0.99374 (2)0.06930 (19)
N11.0386 (2)0.02579 (17)0.89975 (6)0.0648 (3)
N21.1983 (2)−0.04336 (17)0.93483 (6)0.0690 (3)
H21.34350.02030.94210.083*
N30.9025 (2)−0.29670 (17)0.94909 (6)0.0668 (3)
H3A0.8033−0.24890.92950.080*
H3B0.8534−0.40240.96310.080*
O10.6110 (2)0.55328 (16)0.73145 (6)0.0812 (3)
C11.1305 (2)−0.20768 (19)0.95761 (7)0.0591 (3)
C21.1216 (3)0.1882 (2)0.88465 (7)0.0663 (4)
H2A1.27640.24980.89950.080*
C30.9864 (3)0.2818 (2)0.84546 (7)0.0630 (4)
C40.7501 (3)0.2031 (2)0.82202 (7)0.0681 (4)
H40.67250.08670.83210.082*
C50.6322 (3)0.2971 (2)0.78409 (8)0.0716 (4)
H50.47610.24310.76830.086*
C60.7444 (3)0.4721 (2)0.76919 (7)0.0677 (4)
C70.9777 (3)0.5528 (2)0.79263 (7)0.0726 (4)
H71.05360.67040.78330.087*
C81.0957 (3)0.4563 (2)0.82997 (7)0.0698 (4)
H81.25260.51000.84510.084*
C90.7089 (4)0.7404 (2)0.72041 (9)0.0880 (5)
H9A0.85640.75290.69830.106*
H9B0.74320.81610.76120.106*
C100.5257 (4)0.7986 (3)0.67937 (9)0.0890 (5)
H10A0.37170.76240.69820.107*
H10B0.56930.93090.68050.107*
C110.5012 (4)0.7192 (3)0.60985 (8)0.0811 (5)
H11A0.45230.58690.60850.097*
H11B0.65610.75220.59130.097*
C120.3221 (3)0.7838 (3)0.56889 (9)0.0817 (5)
H12A0.16600.74480.58630.098*
H12B0.36620.91640.57270.098*
C130.3025 (3)0.7155 (2)0.49799 (9)0.0826 (5)
H13A0.25730.58280.49400.099*
H13B0.45830.75430.48030.099*
C140.1228 (3)0.7824 (3)0.45814 (8)0.0810 (5)
H14A−0.03310.74200.47560.097*
H14B0.16670.91500.46290.097*
C150.1029 (4)0.7182 (3)0.38689 (9)0.0891 (5)
H15A0.05620.58570.38190.107*
H15B0.25890.75730.36930.107*
C16−0.0752 (4)0.7893 (3)0.34816 (10)0.0987 (6)
H16A−0.23290.74160.36240.148*
H16B−0.07100.75090.30310.148*
H16C−0.03470.92040.35440.148*
U11U22U33U12U13U23
S10.0526 (3)0.0696 (3)0.0871 (3)0.01517 (17)−0.00582 (18)0.02038 (19)
N10.0600 (7)0.0703 (8)0.0671 (7)0.0211 (5)−0.0045 (5)0.0120 (6)
N20.0551 (7)0.0706 (8)0.0817 (8)0.0141 (6)−0.0097 (6)0.0204 (6)
N30.0527 (6)0.0681 (7)0.0810 (8)0.0158 (5)−0.0032 (5)0.0155 (6)
O10.0863 (8)0.0834 (7)0.0823 (7)0.0315 (6)−0.0029 (6)0.0277 (6)
C10.0534 (7)0.0639 (8)0.0604 (8)0.0158 (6)0.0003 (6)0.0060 (6)
C20.0666 (9)0.0705 (9)0.0627 (8)0.0181 (7)−0.0032 (6)0.0120 (7)
C30.0680 (8)0.0687 (8)0.0555 (7)0.0224 (6)0.0007 (6)0.0090 (6)
C40.0709 (9)0.0664 (8)0.0691 (9)0.0191 (7)0.0004 (7)0.0152 (7)
C50.0677 (9)0.0792 (10)0.0713 (9)0.0228 (7)−0.0027 (7)0.0159 (7)
C60.0774 (9)0.0744 (9)0.0587 (8)0.0309 (7)0.0027 (7)0.0132 (7)
C70.0831 (10)0.0666 (9)0.0687 (9)0.0177 (7)0.0007 (7)0.0153 (7)
C80.0712 (9)0.0711 (9)0.0662 (9)0.0159 (7)−0.0042 (7)0.0102 (7)
C90.1125 (15)0.0781 (11)0.0813 (11)0.0368 (10)−0.0047 (10)0.0185 (9)
C100.1121 (15)0.0853 (11)0.0837 (12)0.0468 (11)0.0025 (10)0.0239 (9)
C110.0900 (12)0.0816 (11)0.0815 (11)0.0349 (9)0.0066 (9)0.0225 (8)
C120.0882 (12)0.0861 (11)0.0802 (11)0.0350 (9)0.0053 (9)0.0224 (9)
C130.0886 (12)0.0810 (11)0.0843 (11)0.0299 (9)0.0039 (9)0.0174 (9)
C140.0875 (12)0.0802 (10)0.0797 (11)0.0276 (9)0.0040 (8)0.0146 (8)
C150.0945 (13)0.0900 (12)0.0859 (12)0.0307 (10)−0.0021 (9)0.0068 (9)
C160.1001 (14)0.1156 (15)0.0842 (12)0.0372 (12)−0.0079 (10)0.0060 (11)
S1—C11.6930 (15)C9—H9A0.9700
N1—C21.275 (2)C9—H9B0.9700
N1—N21.3863 (16)C10—C111.507 (3)
N2—C11.341 (2)C10—H10A0.9700
N2—H20.8600C10—H10B0.9700
N3—C11.3227 (19)C11—C121.518 (2)
N3—H3A0.8600C11—H11A0.9700
N3—H3B0.8600C11—H11B0.9700
O1—C61.3665 (19)C12—C131.513 (3)
O1—C91.432 (2)C12—H12A0.9700
C2—C31.453 (2)C12—H12B0.9700
C2—H2A0.9300C13—C141.517 (2)
C3—C81.387 (2)C13—H13A0.9700
C3—C41.402 (2)C13—H13B0.9700
C4—C51.377 (2)C14—C151.512 (3)
C4—H40.9300C14—H14A0.9700
C5—C61.390 (2)C14—H14B0.9700
C5—H50.9300C15—C161.515 (3)
C6—C71.389 (2)C15—H15A0.9700
C7—C81.383 (2)C15—H15B0.9700
C7—H70.9300C16—H16A0.9600
C8—H80.9300C16—H16B0.9600
C9—C101.511 (3)C16—H16C0.9600
C2—N1—N2114.83 (13)C9—C10—H10A108.7
C1—N2—N1121.23 (12)C11—C10—H10B108.7
C1—N2—H2119.4C9—C10—H10B108.7
N1—N2—H2119.4H10A—C10—H10B107.6
C1—N3—H3A120.0C10—C11—C12113.38 (15)
C1—N3—H3B120.0C10—C11—H11A108.9
H3A—N3—H3B120.0C12—C11—H11A108.9
C6—O1—C9117.89 (14)C10—C11—H11B108.9
N3—C1—N2117.74 (13)C12—C11—H11B108.9
N3—C1—S1123.14 (12)H11A—C11—H11B107.7
N2—C1—S1119.09 (11)C13—C12—C11114.97 (15)
N1—C2—C3123.26 (14)C13—C12—H12A108.5
N1—C2—H2A118.4C11—C12—H12A108.5
C3—C2—H2A118.4C13—C12—H12B108.5
C8—C3—C4118.26 (14)C11—C12—H12B108.5
C8—C3—C2118.79 (14)H12A—C12—H12B107.5
C4—C3—C2122.94 (15)C12—C13—C14113.91 (15)
C5—C4—C3120.37 (15)C12—C13—H13A108.8
C5—C4—H4119.8C14—C13—H13A108.8
C3—C4—H4119.8C12—C13—H13B108.8
C4—C5—C6120.57 (15)C14—C13—H13B108.8
C4—C5—H5119.7H13A—C13—H13B107.7
C6—C5—H5119.7C15—C14—C13114.88 (16)
O1—C6—C7124.47 (15)C15—C14—H14A108.5
O1—C6—C5115.77 (15)C13—C14—H14A108.5
C7—C6—C5119.76 (15)C15—C14—H14B108.5
C8—C7—C6119.26 (15)C13—C14—H14B108.5
C8—C7—H7120.4H14A—C14—H14B107.5
C6—C7—H7120.4C14—C15—C16113.71 (16)
C7—C8—C3121.78 (15)C14—C15—H15A108.8
C7—C8—H8119.1C16—C15—H15A108.8
C3—C8—H8119.1C14—C15—H15B108.8
O1—C9—C10107.53 (17)C16—C15—H15B108.8
O1—C9—H9A110.2H15A—C15—H15B107.7
C10—C9—H9A110.2C15—C16—H16A109.5
O1—C9—H9B110.2C15—C16—H16B109.5
C10—C9—H9B110.2H16A—C16—H16B109.5
H9A—C9—H9B108.5C15—C16—H16C109.5
C11—C10—C9114.12 (15)H16A—C16—H16C109.5
C11—C10—H10A108.7H16B—C16—H16C109.5
C2—N1—N2—C1175.56 (13)O1—C6—C7—C8−179.39 (14)
N1—N2—C1—N3−4.3 (2)C5—C6—C7—C80.7 (2)
N1—N2—C1—S1174.08 (10)C6—C7—C8—C3−0.9 (2)
N2—N1—C2—C3177.06 (12)C4—C3—C8—C70.2 (2)
N1—C2—C3—C8−177.92 (14)C2—C3—C8—C7179.72 (13)
N1—C2—C3—C41.6 (2)C6—O1—C9—C10−178.39 (13)
C8—C3—C4—C50.7 (2)O1—C9—C10—C11−73.0 (2)
C2—C3—C4—C5−178.83 (13)C9—C10—C11—C12−178.21 (16)
C3—C4—C5—C6−0.8 (2)C10—C11—C12—C13176.73 (17)
C9—O1—C6—C7−6.4 (2)C11—C12—C13—C14−179.85 (15)
C9—O1—C6—C5173.52 (14)C12—C13—C14—C15179.08 (16)
C4—C5—C6—O1−179.76 (13)C13—C14—C15—C16−179.20 (17)
C4—C5—C6—C70.1 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-4-(Benz-yloxy)benzaldehyde thio-semicarbazone.

Authors:  M T H Tarafder; M A A A A Islam; K A Crouse; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

3.  Unusual coordination mode of thiosemicarbazone ligands. A search for the origin.

Authors:  F Basuli; S M Peng; S Bhattacharya
Journal:  Inorg Chem       Date:  2000-03-20       Impact factor: 5.165

  3 in total

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