Literature DB >> 21202711

4,4'-Bipyridine-butane-1,2,3,4-tetra-carboxylic acid (1/1).

M Mahdi Najafpour, Małgorzata Hołyńska, Tadeusz Lis.   

Abstract

The title compound, C(10)H(8)N(2)·C(8)H(10)O(8), is an example of a system with a short O⋯H⋯N hydrogen bond [O⋯N = 2.565 (3) Å]. The crystal structure comprises a 1:1 adduct between 4,4'-bipyridine and butane-1,2,3,4-tetra-carboxylic acid, where both components are centrosymmetric. The component mol-ecules are linked through strong O⋯H⋯N hydrogen bonds, forming chains extending approximately along [11]. The chains are inter-connected by O⋯H⋯O hydrogen bonds and weak stacking inter-actions involving the pyridyl rings of the 4,4'-bipyridine mol-ecules [centroid-centroid distance = 3.73 (2) Å and inter-planar distance = 3.35 (1) Å]. The H atom of the short O⋯H⋯N hydrogen bond is disordered over two positions with site occupancy factors of ca 0.6 and 0.4. One methylene group is disordered over two positions; the site occupancy factors are ca 0.9 and 0.1.

Entities:  

Year:  2008        PMID: 21202711      PMCID: PMC2961488          DOI: 10.1107/S1600536808011732

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Barnes & Barnes (1996 ▶); Cowan et al. (2003 ▶); Etter et al. (1990 ▶); Majerz et al. (1997 ▶); McKee & Najafpour (2007 ▶); Steiner et al. (2000 ▶, 2001 ▶); Wang & Chen (2005 ▶); Wang & Wei (2006 ▶).

Experimental

Crystal data

C10H8N2·C8H10O8 M = 390.34 Triclinic, a = 5.642 (4) Å b = 6.966 (4) Å c = 11.680 (8) Å α = 73.55 (5)° β = 81.34 (5)° γ = 73.85 (5)° V = 421.6 (5) Å3 Z = 1 Mo Kα radiation μ = 0.12 mm−1 T = 100 (2) K 0.40 × 0.18 × 0.04 mm

Data collection

Oxford Diffraction KM-4-CCD diffractometer Absorption correction: none 3650 measured reflections 1946 independent reflections 1034 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.083 S = 1.01 1946 reflections 135 parameters 2 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011732/tk2261sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011732/tk2261Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·C8H10O8Z = 1
Mr = 390.34F000 = 204
Triclinic, P1Dx = 1.537 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 5.642 (4) ÅCell parameters from 3002 reflections
b = 6.966 (4) Åθ = 2–35º
c = 11.680 (8) ŵ = 0.12 mm1
α = 73.55 (5)ºT = 100 (2) K
β = 81.34 (5)ºPlate, colourless
γ = 73.85 (5)º0.40 × 0.18 × 0.04 mm
V = 421.6 (5) Å3
Oxford Diffraction KM-4-CCD diffractometer1034 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
Monochromator: graphiteθmax = 28.4º
T = 100(2) Kθmin = 3.2º
ω scansh = −7→7
Absorption correction: nonek = −7→9
3650 measured reflectionsl = −15→15
1946 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.083  w = 1/[σ2(Fo2) + (0.027P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1946 reflectionsΔρmax = 0.30 e Å3
135 parametersΔρmin = −0.19 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/UeqOcc. (<1)
O110.4836 (2)0.4390 (2)0.68732 (11)0.0338 (4)
H1A0.62750.37640.66760.051*0.59 (3)
N10.9093 (3)0.2488 (2)0.61058 (14)0.0231 (4)
H1B0.76250.31050.63810.035*0.41 (3)
C21.0784 (3)0.1253 (3)0.68554 (17)0.0265 (5)
H21.03780.10510.76930.032*
C31.3105 (3)0.0261 (3)0.64525 (16)0.0272 (5)
H31.4260−0.06080.70120.033*
C41.3754 (3)0.0531 (3)0.52342 (16)0.0208 (4)
C51.1967 (3)0.1826 (3)0.44570 (16)0.0232 (5)
H51.23180.20590.36150.028*
C60.9677 (3)0.2764 (3)0.49322 (16)0.0237 (5)
H60.84750.36400.43980.028*
C110.1384 (3)0.4629 (3)0.97960 (16)0.0276 (5)
H110.22870.55061.00160.033*
C21A0.1846 (4)0.4914 (3)0.84558 (17)0.0250 (7)0.940 (6)
H21A0.14160.64120.80620.030*0.940 (6)
H21B0.07190.42850.81930.030*0.940 (6)
C310.4490 (4)0.3983 (3)0.80273 (18)0.0271 (5)
O210.6106 (2)0.29297 (19)0.87162 (11)0.0272 (3)
C120.2377 (3)0.2422 (3)1.05080 (18)0.0262 (5)
O120.1933 (2)0.1051 (2)1.00261 (12)0.0316 (4)
H120.2479−0.01481.04500.047*
O220.3354 (2)0.1971 (2)1.14272 (12)0.0387 (4)
C21B0.290 (6)0.552 (3)0.875 (2)0.014 (9)*0.060 (6)
H21C0.40140.61440.90280.017*0.060 (6)
H21D0.17850.66550.82070.017*0.060 (6)
U11U22U33U12U13U23
O110.0236 (8)0.0379 (10)0.0249 (9)0.0087 (7)0.0034 (6)−0.0030 (7)
N10.0167 (9)0.0238 (10)0.0249 (10)0.0016 (7)0.0005 (7)−0.0074 (8)
C20.0243 (11)0.0321 (12)0.0190 (11)−0.0009 (10)0.0012 (9)−0.0073 (9)
C30.0207 (11)0.0308 (12)0.0233 (12)0.0025 (9)−0.0028 (9)−0.0042 (10)
C40.0178 (10)0.0214 (11)0.0220 (11)−0.0027 (8)0.0003 (9)−0.0066 (9)
C50.0242 (11)0.0228 (11)0.0191 (11)−0.0023 (9)0.0016 (9)−0.0051 (9)
C60.0226 (11)0.0224 (11)0.0202 (11)0.0001 (9)−0.0043 (9)−0.0006 (9)
C110.0227 (11)0.0240 (12)0.0251 (11)0.0066 (9)0.0032 (9)−0.0036 (9)
C21A0.0237 (13)0.0196 (13)0.0236 (13)0.0035 (10)−0.0008 (10)−0.0021 (10)
C310.0285 (12)0.0209 (12)0.0264 (12)−0.0009 (10)0.0038 (10)−0.0056 (10)
O210.0232 (7)0.0243 (8)0.0267 (8)0.0026 (6)−0.0017 (7)−0.0035 (7)
C120.0179 (11)0.0265 (12)0.0268 (12)0.0039 (9)0.0072 (9)−0.0088 (10)
O120.0290 (8)0.0227 (8)0.0353 (9)0.0008 (7)−0.0042 (7)−0.0015 (7)
O220.0421 (9)0.0361 (9)0.0264 (8)0.0121 (7)−0.0098 (7)−0.0076 (7)
N1—C61.332 (2)C4—C51.400 (3)
N1—C21.336 (2)C4—C4i1.497 (4)
C31—O111.293 (3)C5—C61.387 (3)
C31—O211.237 (2)C5—H50.95
C12—O121.331 (2)C6—H60.95
C12—O221.202 (2)C11—C21A1.512 (3)
O11—C311.293 (2)C11—C121.519 (3)
O11—H1A0.84C11—C11ii1.549 (4)
N1—H1B0.88C11—H111.00
C2—C31.382 (3)C21A—C311.523 (3)
C2—H20.95C21A—H21A0.99
C3—C41.387 (3)C21A—H21B0.99
C3—H30.95O12—H120.84
C6—N1—C2118.6 (2)C4—C5—H5120.4
C21A—C11—C12113.4 (2)N1—C6—C5122.73 (17)
C21A—C11—C11ii113.0 (2)N1—C6—H6118.6
O21—C31—O11124.2 (2)C5—C6—H6118.6
O22—C12—O12124.0 (2)C12—C11—C11ii109.00 (19)
C31—O11—H1A109.5C21A—C11—H11107.0
C6—N1—H1B120.7C12—C11—H11107.0
C2—N1—H1B120.7C11ii—C11—H11107.0
N1—C2—C3122.18 (18)C11—C21A—C31114.83 (18)
N1—C2—H2118.9C11—C21A—H21A108.6
C3—C2—H2118.9C31—C21A—H21A108.6
C2—C3—C4120.20 (18)C11—C21A—H21B108.6
C2—C3—H3119.9C31—C21A—H21B108.6
C4—C3—H3119.9H21A—C21A—H21B107.5
C3—C4—C5117.12 (17)O21—C31—C21A123.24 (18)
C3—C4—C4i121.7 (2)O11—C31—C21A112.54 (18)
C5—C4—C4i121.2 (2)O22—C12—C11123.9 (2)
C6—C5—C4119.19 (17)O12—C12—C11112.07 (18)
C6—C5—H5120.4C12—O12—H12109.5
C6—N1—C2—C30.0 (3)C11ii—C11—C21A—C31−173.3 (2)
N1—C2—C3—C40.1 (3)C11—C21A—C31—O215.5 (3)
C2—C3—C4—C5−0.2 (3)C11—C21A—C31—O11−175.45 (18)
C2—C3—C4—C4i−179.6 (2)C21A—C11—C12—O22141.0 (2)
C3—C4—C5—C60.1 (3)C11ii—C11—C12—O22−92.2 (3)
C4i—C4—C5—C6179.53 (19)C21A—C11—C12—O12−42.0 (2)
C2—N1—C6—C5−0.1 (3)C11ii—C11—C12—O1284.8 (2)
C4—C5—C6—N10.0 (3)C5—C4—C4i—C3i0.6 (4)
C12—C11—C21A—C31−48.6 (3)
D—H···AD—HH···AD···AD—H···A
O11—H1A···N10.841.732.565 (3)173
N1—H1B···O110.881.692.565 (3)177
O12—H12···O21iii0.841.912.747 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O11—H1A⋯N10.841.732.565 (3)173
N1—H1B⋯O110.881.692.565 (3)177
O12—H12⋯O21iii0.841.912.747 (3)175

Symmetry code: (iii) .

  4 in total

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Authors:  Thomas Steiner; Irena Majerz; Chick C. Wilson
Journal:  Angew Chem Int Ed Engl       Date:  2001-07-16       Impact factor: 15.336

2.  Variable-temperature neutron diffraction studies of the short, strong N...O hydrogen bonds in the 1:2 co-crystal of benzene-1,2,4,5-tetracarboxylic acid and 4,4'-bipyridyl.

Authors:  John A Cowan; Judith A K Howard; Garry J McIntyre; Samuel M-F Lo; Ian D Williams
Journal:  Acta Crystallogr B       Date:  2003-11-25

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01
  4 in total
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1.  Butane-1,2,3,4-tetra-carboxylic acid dihydrate.

Authors:  Yu Cheng; Jiang Wu; Hong-Lin Zhu; Jian-Li Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

2.  Butane-1,2,3,4-tetra-carboxylic acid-4,4'-bipyridine (1/2).

Authors:  Ning Zhang; Xue-Min Shi; Min Shao; Ming-Xing Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

3.  1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

Authors:  Guangzhe Li; Chris Salim; Hirofumi Hinode
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

4.  Butane-1,2,3,4-tetra-carb-oxy-lic acid-1,10-phenanthroline-water (1/2/2).

Authors:  Hong-Lin Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

5.  Supra-molecular inter-actions in the 1:2 co-crystal of 4,4'-bipyridine and 3-chloro-thio-phene-2-carb-oxy-lic acid.

Authors:  Olakkandiyil Prajina; Packianathan Thomas Muthiah; David K Geiger
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-09-05
  5 in total

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