Literature DB >> 21583687

Butane-1,2,3,4-tetra-carboxylic acid-4,4'-bipyridine (1/2).

Ning Zhang, Xue-Min Shi, Min Shao, Ming-Xing Li.   

Abstract

The hydro-thermal reaction of butane-1,2,3,4-tetra-carboxylic acid (H(4)butca), 4,4'-bipyridine (bipy) and Mn(SO(4))(2)·H(2)O afforded a new co-crystal, C(8)H(10)O(8)·2C(10)H(8)N(2) or H(4)butca·2(bipy), in which strong O-H⋯N hydrogen-bonding and weak π-π stacking [centroid-centroid distance = 3.8459 (19) Å] inter-actions assemble the organic mol-ecules into a three-dimensional supra-molecular framework. C-H⋯O inter-actions are also present. The whole mol-ecule has inversion symmetry.

Entities:  

Year:  2009        PMID: 21583687      PMCID: PMC2977318          DOI: 10.1107/S1600536809029237

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the importance of hydrogen-bonding and π-π stacking inter­actions in supra­molecular chemistry, crystal engineering and biological recognition, see: Wang et al. (2007 ▶). Many organic co-crystals have been assembled from N-heterocycles and polycarboxylic acids, see: Li et al. (2007 ▶). For the 1:1 co-crystal H4butca·bipy, see: Najafpour et al. (2008 ▶).

Experimental

Crystal data

C8H10O8·2C10H8N2 M = 546.53 Triclinic, a = 7.4435 (11) Å b = 8.6990 (13) Å c = 11.438 (2) Å α = 99.819 (3)° β = 105.662 (3)° γ = 111.361 (2)° V = 633.57 (17) Å3 Z = 1 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.30 × 0.30 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.969, T max = 0.969 3287 measured reflections 2196 independent reflections 1721 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.176 S = 1.07 2196 reflections 183 parameters H-atom parameters constrained Δρmax = 0.78 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I, New_Global_Publ_Block. DOI: 10.1107/S1600536809029237/at2847sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029237/at2847Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10O8·2C10H8N2Z = 1
Mr = 546.53F(000) = 286
Triclinic, P1Dx = 1.432 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4435 (11) ÅCell parameters from 1387 reflections
b = 8.6990 (13) Åθ = 2.6–26.6°
c = 11.438 (2) ŵ = 0.11 mm1
α = 99.819 (3)°T = 296 K
β = 105.662 (3)°Block, colourless
γ = 111.361 (2)°0.30 × 0.30 × 0.30 mm
V = 633.57 (17) Å3
Bruker SMART APEXII CCD area-detector diffractometer2196 independent reflections
Radiation source: fine-focus sealed tube1721 reflections with I > 2σ(I)
graphiteRint = 0.013
φ and ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.969, Tmax = 0.969k = −9→10
3287 measured reflectionsl = −13→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0797P)2 + 0.4629P] where P = (Fo2 + 2Fc2)/3
2196 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 0.78 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1342 (5)0.6302 (4)−0.0696 (3)0.0508 (7)
C2−0.0232 (5)0.7892 (4)0.0456 (3)0.0597 (9)
H2A−0.12120.79390.08580.072*
H2B0.08440.77420.10580.072*
C30.0728 (5)0.9587 (3)0.0242 (3)0.0548 (8)
H30.13160.9400−0.04100.066*
C40.2542 (5)1.0895 (4)0.1447 (3)0.0498 (7)
C5−0.2914 (4)0.4885 (4)0.4266 (3)0.0479 (7)
H5−0.39170.41110.44850.057*
C6−0.1373 (4)0.6347 (4)0.5207 (3)0.0449 (7)
H6−0.13460.65480.60380.054*
C70.0146 (4)0.7522 (3)0.4900 (2)0.0368 (6)
C8−0.0007 (4)0.7138 (4)0.3640 (3)0.0490 (7)
H80.09630.78880.33870.059*
C9−0.1600 (5)0.5644 (4)0.2767 (3)0.0543 (8)
H9−0.16710.54080.19280.065*
C100.1856 (4)0.9112 (3)0.5876 (2)0.0373 (6)
C110.2302 (4)0.9316 (4)0.7163 (3)0.0467 (7)
H110.15310.84420.74360.056*
C120.3888 (4)1.0814 (4)0.8037 (3)0.0515 (7)
H120.41601.09200.88970.062*
C130.4643 (4)1.1920 (4)0.6489 (3)0.0500 (7)
H130.54551.28150.62490.060*
C140.3093 (4)1.0477 (4)0.5543 (3)0.0452 (7)
H140.28691.04090.46920.054*
N1−0.3041 (4)0.4522 (3)0.3059 (2)0.0486 (6)
N20.5053 (3)1.2116 (3)0.7720 (2)0.0480 (6)
O1−0.1175 (4)0.6219 (3)−0.1724 (2)0.0646 (6)
O2−0.2488 (4)0.5023 (3)−0.0413 (2)0.0675 (7)
H2−0.31150.4168−0.10430.101*
O30.4001 (3)1.1949 (3)0.11635 (17)0.0535 (6)
H3A0.48951.26950.18160.080*
O40.2601 (3)1.0897 (3)0.25184 (19)0.0617 (6)
U11U22U33U12U13U23
C10.0491 (16)0.0413 (16)0.0448 (17)0.0165 (13)0.0013 (13)0.0039 (13)
C20.0589 (19)0.0442 (17)0.0560 (19)0.0128 (15)0.0062 (15)0.0121 (14)
C30.0543 (17)0.0355 (15)0.0479 (17)0.0079 (13)−0.0013 (14)0.0065 (12)
C40.0508 (17)0.0385 (15)0.0391 (16)0.0143 (13)−0.0039 (13)0.0051 (12)
C50.0422 (15)0.0415 (15)0.0449 (16)0.0070 (13)0.0106 (12)0.0105 (12)
C60.0477 (15)0.0451 (15)0.0353 (14)0.0143 (13)0.0142 (12)0.0103 (12)
C70.0358 (13)0.0365 (13)0.0354 (13)0.0156 (11)0.0095 (11)0.0098 (11)
C80.0465 (16)0.0501 (16)0.0375 (15)0.0092 (13)0.0148 (12)0.0096 (12)
C90.0551 (17)0.0537 (17)0.0353 (15)0.0106 (14)0.0126 (13)0.0038 (13)
C100.0348 (13)0.0363 (13)0.0370 (14)0.0146 (11)0.0102 (11)0.0079 (11)
C110.0471 (15)0.0432 (15)0.0377 (14)0.0086 (13)0.0138 (12)0.0100 (12)
C120.0498 (16)0.0526 (17)0.0360 (15)0.0120 (14)0.0100 (13)0.0068 (13)
C130.0447 (16)0.0410 (15)0.0536 (17)0.0087 (13)0.0148 (13)0.0159 (13)
C140.0453 (15)0.0460 (15)0.0395 (15)0.0142 (13)0.0145 (12)0.0150 (12)
N10.0450 (13)0.0419 (13)0.0417 (14)0.0105 (11)0.0060 (10)0.0056 (10)
N20.0398 (12)0.0424 (13)0.0469 (14)0.0088 (10)0.0098 (10)0.0079 (10)
O10.0678 (15)0.0481 (13)0.0711 (16)0.0150 (11)0.0286 (12)0.0185 (11)
O20.0788 (16)0.0500 (13)0.0436 (12)0.0084 (12)0.0114 (11)0.0034 (10)
O30.0456 (11)0.0456 (12)0.0373 (11)0.0028 (9)−0.0005 (9)−0.0005 (9)
O40.0599 (13)0.0513 (13)0.0424 (12)0.0047 (10)0.0019 (10)0.0097 (9)
C1—O11.209 (4)C7—C101.484 (4)
C1—O21.285 (4)C8—C91.374 (4)
C1—C21.513 (4)C8—H80.9300
C2—C31.482 (4)C9—N11.325 (4)
C2—H2A0.9700C9—H90.9300
C2—H2B0.9700C10—C111.383 (4)
C3—C41.536 (4)C10—C141.395 (4)
C3—C3i1.542 (6)C11—C121.374 (4)
C3—H30.9800C11—H110.9300
C4—O41.214 (3)C12—N21.327 (4)
C4—O31.301 (4)C12—H120.9300
C5—N11.332 (4)C13—N21.324 (4)
C5—C61.377 (4)C13—C141.373 (4)
C5—H50.9300C13—H130.9300
C6—C71.393 (4)C14—H140.9300
C6—H60.9300O2—H20.8200
C7—C81.386 (4)O3—H3A0.8200
O1—C1—O2124.5 (3)C6—C7—C10121.7 (2)
O1—C1—C2126.0 (3)C9—C8—C7119.6 (3)
O2—C1—C2109.5 (3)C9—C8—H8120.2
C3—C2—C1117.3 (3)C7—C8—H8120.2
C3—C2—H2A108.0N1—C9—C8123.5 (3)
C1—C2—H2A108.0N1—C9—H9118.3
C3—C2—H2B108.0C8—C9—H9118.3
C1—C2—H2B108.0C11—C10—C14116.6 (2)
H2A—C2—H2B107.2C11—C10—C7121.5 (2)
C2—C3—C4110.8 (2)C14—C10—C7121.8 (2)
C2—C3—C3i116.5 (3)C12—C11—C10119.8 (3)
C4—C3—C3i108.9 (3)C12—C11—H11120.1
C2—C3—H3106.7C10—C11—H11120.1
C4—C3—H3106.7N2—C12—C11123.5 (3)
C3i—C3—H3106.7N2—C12—H12118.2
O4—C4—O3125.2 (2)C11—C12—H12118.2
O4—C4—C3123.6 (3)N2—C13—C14124.0 (3)
O3—C4—C3111.2 (3)N2—C13—H13118.0
N1—C5—C6123.4 (3)C14—C13—H13118.0
N1—C5—H5118.3C13—C14—C10119.2 (3)
C6—C5—H5118.3C13—C14—H14120.4
C5—C6—C7119.2 (2)C10—C14—H14120.4
C5—C6—H6120.4C9—N1—C5117.3 (2)
C7—C6—H6120.4C13—N2—C12116.9 (2)
C8—C7—C6117.0 (2)C1—O2—H2109.5
C8—C7—C10121.3 (2)C4—O3—H3A109.5
D—H···AD—HH···AD···AD—H···A
C14—H14···O40.932.563.476 (3)168
C9—H9···O20.932.513.425 (4)167
O3—H3A···N1ii0.821.782.595 (3)170
O2—H2···N2iii0.821.842.642 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14⋯O40.932.563.476 (3)168
C9—H9⋯O20.932.513.425 (4)167
O3—H3A⋯N1i0.821.782.595 (3)170
O2—H2⋯N2ii0.821.842.642 (3)167

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tuned triazolatesilver(I) luminescent complexes from zero- to three-dimensionality based on bi- to tetratopic bridged ligands.

Authors:  Ying Wang; Bin Ding; Peng Cheng; Dai-Zheng Liao; Shi-Ping Yan
Journal:  Inorg Chem       Date:  2007-02-10       Impact factor: 5.165

3.  4,4'-Bipyridine-butane-1,2,3,4-tetra-carboxylic acid (1/1).

Authors:  M Mahdi Najafpour; Małgorzata Hołyńska; Tadeusz Lis
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  3 in total

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