Literature DB >> 21837032

Butane-1,2,3,4-tetra-carb-oxy-lic acid-1,10-phenanthroline-water (1/2/2).

Hong-Lin Zhu1.   

Abstract

The asymmetric unit of the title compound, 2C(12)H(8)N(2C(8)H(10)O(8)·2H(2)O, contains one 1,10-phenanthroline mol-ecule, one half-mol-ecule of butane-1,2,3,4-tetra-carb-oxy-lic acid (H(4)BTC) and a water mol-ecule, with the complete tetra-acid generated by crystallographic inversion symmetry. Inter-molecular O-H⋯O hydrogen bonds and π-π stacking inter-actions [centroid-centroid distances = 3.672 (2) and 3.708 (2) Å form an extensive three-dimensional network, which consolidates the crystal packing.

Entities:  

Year:  2011        PMID: 21837032      PMCID: PMC3151845          DOI: 10.1107/S1600536811021398

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of H4BTC as a ligand in metal–organic coordination complexes, see: Delgado et al. (2007 ▶); Liu et al. (2008 ▶); Xu et al. (2010 ▶); Zhu et al. (2011 ▶). For co-crystals involving H4BTC, see: Cheng et al. (2009 ▶); Najafpour et al. (2008 ▶). For details of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

2C12H8N2·C8H10O8·2H2O M = 630.60 Triclinic, a = 7.9472 (16) Å b = 9.884 (2) Å c = 10.628 (2) Å α = 84.37 (3)° β = 70.12 (3)° γ = 72.72 (3)° V = 749.7 (3) Å3 Z = 1 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.58 × 0.34 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.950, T max = 0.990 7400 measured reflections 3396 independent reflections 1960 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.188 S = 1.17 3396 reflections 208 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.34 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021398/sj5157sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021398/sj5157Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C12H8N2·C8H10O8·2H2OZ = 1
Mr = 630.60F(000) = 330
Triclinic, P1Dx = 1.397 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9472 (16) ÅCell parameters from 4546 reflections
b = 9.884 (2) Åθ = 3.1–27.5°
c = 10.628 (2) ŵ = 0.11 mm1
α = 84.37 (3)°T = 293 K
β = 70.12 (3)°Block, colorless
γ = 72.72 (3)°0.58 × 0.34 × 0.10 mm
V = 749.7 (3) Å3
Rigaku R-AXIS RAPID diffractometer3396 independent reflections
Radiation source: fine-focus sealed tube1960 reflections with I > 2σ(I)
graphiteRint = 0.024
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.950, Tmax = 0.990k = −12→12
7400 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0607P)2 + 0.4694P] where P = (Fo2 + 2Fc2)/3
3396 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.5184 (3)0.7050 (2)0.4404 (3)0.0745 (7)
H1A−0.58990.79190.44470.089*
O2−0.3498 (3)0.8187 (2)0.4902 (3)0.0734 (7)
C1−0.3757 (4)0.7102 (3)0.4718 (3)0.0434 (6)
C2−0.2475 (4)0.5669 (3)0.4825 (3)0.0484 (6)
H2A−0.22400.51030.40550.058*
H2B−0.30860.52000.56190.058*
C3−0.0619 (3)0.5737 (2)0.4898 (2)0.0389 (5)
H3A−0.08620.63510.56470.047*
C40.0425 (4)0.6356 (2)0.3614 (2)0.0408 (5)
O30.0605 (3)0.5952 (2)0.25216 (19)0.0652 (6)
O40.1121 (3)0.73303 (19)0.37990 (18)0.0532 (5)
H4A0.16390.77060.30540.064*
N10.0963 (3)1.0528 (2)0.2323 (2)0.0514 (6)
C5−0.0353 (5)1.1744 (3)0.2717 (3)0.0613 (8)
H5A−0.08901.19340.36290.074*
C6−0.0969 (5)1.2746 (3)0.1844 (4)0.0705 (9)
H6A−0.19151.35710.21700.085*
C7−0.0175 (5)1.2505 (3)0.0505 (3)0.0677 (9)
H7A−0.05651.3168−0.00960.081*
C80.1230 (4)1.1255 (3)0.0040 (3)0.0546 (7)
C90.2172 (5)1.0959 (4)−0.1356 (3)0.0696 (9)
H9A0.18101.1599−0.19820.084*
C100.3561 (6)0.9781 (4)−0.1774 (3)0.0734 (10)
H10A0.41850.9633−0.26870.088*
C110.4106 (4)0.8744 (3)−0.0853 (3)0.0571 (7)
C120.5552 (5)0.7492 (4)−0.1252 (4)0.0746 (10)
H12A0.62360.7328−0.21540.089*
C130.5961 (5)0.6515 (4)−0.0328 (4)0.0777 (10)
H13A0.69350.5690−0.05860.093*
C140.4888 (5)0.6777 (3)0.1014 (4)0.0709 (9)
H14A0.51490.60930.16390.085*
C150.3153 (4)0.8952 (3)0.0537 (3)0.0466 (6)
C160.1741 (4)1.0267 (3)0.0985 (2)0.0449 (6)
N20.3519 (3)0.7946 (2)0.1444 (2)0.0552 (6)
O50.2570 (3)0.9523 (2)0.4390 (2)0.0597 (6)
H5B0.29321.02750.44040.072*
H5C0.17360.97540.40110.072*
U11U22U33U12U13U23
O10.0631 (13)0.0483 (11)0.131 (2)−0.0092 (10)−0.0622 (14)0.0059 (12)
O20.0697 (14)0.0409 (11)0.124 (2)−0.0077 (10)−0.0544 (14)−0.0078 (11)
C10.0420 (13)0.0434 (13)0.0460 (14)−0.0107 (11)−0.0188 (11)0.0070 (11)
C20.0450 (14)0.0369 (12)0.0677 (17)−0.0104 (11)−0.0269 (13)0.0080 (12)
C30.0394 (12)0.0340 (11)0.0442 (13)−0.0094 (10)−0.0166 (10)0.0046 (10)
C40.0475 (14)0.0363 (12)0.0392 (13)−0.0102 (10)−0.0178 (11)0.0053 (10)
O30.0941 (17)0.0659 (13)0.0441 (11)−0.0352 (12)−0.0239 (11)0.0055 (9)
O40.0683 (13)0.0509 (11)0.0502 (11)−0.0332 (10)−0.0205 (9)0.0110 (8)
N10.0597 (14)0.0524 (13)0.0431 (12)−0.0176 (11)−0.0171 (11)0.0022 (10)
C50.068 (2)0.0575 (17)0.0536 (17)−0.0092 (15)−0.0186 (15)−0.0078 (14)
C60.077 (2)0.0546 (17)0.080 (2)−0.0035 (16)−0.0384 (19)−0.0002 (16)
C70.082 (2)0.0611 (19)0.070 (2)−0.0191 (17)−0.0424 (19)0.0141 (16)
C80.0687 (18)0.0576 (16)0.0503 (16)−0.0299 (15)−0.0282 (14)0.0125 (13)
C90.093 (3)0.083 (2)0.0443 (16)−0.041 (2)−0.0266 (17)0.0164 (16)
C100.091 (3)0.096 (3)0.0380 (15)−0.048 (2)−0.0102 (16)0.0071 (17)
C110.0575 (17)0.0677 (18)0.0488 (16)−0.0326 (15)−0.0060 (13)−0.0067 (14)
C120.066 (2)0.086 (2)0.066 (2)−0.0365 (19)0.0029 (17)−0.0179 (19)
C130.058 (2)0.064 (2)0.098 (3)−0.0149 (16)−0.0048 (19)−0.025 (2)
C140.068 (2)0.0519 (17)0.082 (2)−0.0128 (15)−0.0131 (18)−0.0047 (16)
C150.0533 (15)0.0488 (14)0.0434 (14)−0.0281 (12)−0.0121 (12)0.0034 (11)
C160.0548 (15)0.0496 (14)0.0382 (13)−0.0246 (12)−0.0179 (11)0.0054 (11)
N20.0594 (15)0.0461 (12)0.0576 (14)−0.0170 (11)−0.0144 (12)0.0017 (11)
O50.0634 (13)0.0495 (11)0.0780 (14)−0.0128 (9)−0.0418 (11)0.0047 (10)
O1—C11.302 (3)C7—H7A0.9300
O1—H1A0.8734C8—C161.406 (4)
O2—C11.196 (3)C8—C91.431 (4)
C1—C21.499 (3)C9—C101.333 (5)
C2—C31.525 (3)C9—H9A0.9300
C2—H2A0.9700C10—C111.423 (5)
C2—H2B0.9700C10—H10A0.9300
C3—C41.514 (3)C11—C121.399 (5)
C3—C3i1.540 (4)C11—C151.416 (4)
C3—H3A0.9800C12—C131.359 (5)
C4—O31.214 (3)C12—H12A0.9300
C4—O41.303 (3)C13—C141.393 (5)
O4—H4A0.8635C13—H13A0.9300
N1—C51.330 (4)C14—N21.321 (4)
N1—C161.361 (3)C14—H14A0.9300
C5—C61.387 (4)C15—N21.354 (4)
C5—H5A0.9300C15—C161.438 (4)
C6—C71.359 (5)O5—H5B0.8756
C6—H6A0.9300O5—H5C0.8533
C7—C81.393 (4)
Cg1···Cg3ii3.672 (2)Cg2···Cg3iii3.708 (2)
C1—O1—H1A106.5C7—C8—C16118.4 (3)
O2—C1—O1123.2 (2)C7—C8—C9122.2 (3)
O2—C1—C2123.5 (2)C16—C8—C9119.4 (3)
O1—C1—C2113.4 (2)C10—C9—C8121.1 (3)
C1—C2—C3112.9 (2)C10—C9—H9A119.5
C1—C2—H2A109.0C8—C9—H9A119.5
C3—C2—H2A109.0C9—C10—C11121.3 (3)
C1—C2—H2B109.0C9—C10—H10A119.4
C3—C2—H2B109.0C11—C10—H10A119.4
H2A—C2—H2B107.8C12—C11—C15117.1 (3)
C4—C3—C2109.7 (2)C12—C11—C10123.0 (3)
C4—C3—C3i108.5 (2)C15—C11—C10119.8 (3)
C2—C3—C3i112.0 (2)C13—C12—C11120.3 (3)
C4—C3—H3A108.9C13—C12—H12A119.8
C2—C3—H3A108.9C11—C12—H12A119.8
C3i—C3—H3A108.9C12—C13—C14118.6 (3)
O3—C4—O4124.0 (2)C12—C13—H13A120.7
O3—C4—C3122.1 (2)C14—C13—H13A120.7
O4—C4—C3113.9 (2)N2—C14—C13123.5 (4)
C4—O4—H4A111.9N2—C14—H14A118.2
C5—N1—C16117.5 (2)C13—C14—H14A118.2
N1—C5—C6123.7 (3)N2—C15—C11122.0 (3)
N1—C5—H5A118.1N2—C15—C16119.6 (2)
C6—C5—H5A118.1C11—C15—C16118.5 (3)
C7—C6—C5119.1 (3)N1—C16—C8121.9 (3)
C7—C6—H6A120.4N1—C16—C15118.4 (2)
C5—C6—H6A120.4C8—C16—C15119.7 (2)
C6—C7—C8119.4 (3)C14—N2—C15118.3 (3)
C6—C7—H7A120.3H5B—O5—H5C107.6
C8—C7—H7A120.3
Cg1, Cg2 and Cg3 are the centroids of the N1/C5-C8/C16/, N2/C14-C11/C15, and C8-C11/C15/C16, rings respectively.
D—H···AD—HH···AD···AD—H···A
O1—H1A···O5iv0.871.702.565 (3)172
O4—H4A···N20.861.902.723 (3)159
O5—H5B···O2v0.881.982.817 (3)160
O5—H5C···N10.852.092.858 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O5iii0.871.702.565 (3)172
O4—H4A⋯N20.861.902.723 (3)159
O5—H5B⋯O2iv0.881.982.817 (3)160
O5—H5C⋯N10.852.092.858 (3)149

Symmetry codes: (iii) ; (iv) .

  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Butane-1,2,3,4-tetra-carboxylic acid dihydrate.

Authors:  Yu Cheng; Jiang Wu; Hong-Lin Zhu; Jian-Li Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

4.  Unusual (mu-aqua)bis(mu-carboxylate) bridge in homometallic M(II) (M=Mn, Co and Ni) two-dimensional compounds based on the 1,2,3,4-butanetetracarboxylic acid: synthesis, structure, and magnetic properties.

Authors:  Laura Cañadillas-Delgado; Oscar Fabelo; Jorge Pásan; Fernando S Delgado; Francesc Lloret; Miguel Julve; Catalina Ruiz-Pérez
Journal:  Inorg Chem       Date:  2007-08-11       Impact factor: 5.165

5.  4,4'-Bipyridine-butane-1,2,3,4-tetra-carboxylic acid (1/1).

Authors:  M Mahdi Najafpour; Małgorzata Hołyńska; Tadeusz Lis
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  5 in total

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