Literature DB >> 22589984

N-(2,2-Dimethyl-propano-yl)-N'-(2-meth-oxy-phen-yl)thio-urea.

Maisara A Kadir, Bohari M Yamin, M Sukeri M Yusof.   

Abstract

In the title compound, C(13)H(18)N(2)O(2)S, the carbonyl-thio-urea fragment is nearly planar with an r.m.s. deviation of 0.0096 Å. The dihedral angle between carbonyl-thio-urea group and the benzene ring is 19.16 (16)°. There are two intra-molecular N-H⋯O hydrogen bonds, which lead to two pseudo-six-membered rings. Weak intra-molecular C-H⋯S hydrogen bonding also occurs.

Entities:  

Year:  2012        PMID: 22589984      PMCID: PMC3344075          DOI: 10.1107/S1600536812010914

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Saeed & Flörke (2007 ▶); Yusof et al. (2008 ▶); Shoukat et al. (2007 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H18N2O2S M = 266.35 Orthorhombic, a = 5.9181 (10) Å b = 13.492 (2) Å c = 17.592 (3) Å V = 1404.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 273 K 0.50 × 0.14 × 0.09 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.895, T max = 0.980 8711 measured reflections 2763 independent reflections 2227 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.147 S = 1.13 2763 reflections 163 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1141 Flack parameter: 0.63 (15) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812010914/bq2346sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010914/bq2346Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812010914/bq2346Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O2SF(000) = 568
Mr = 266.35Dx = 1.259 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 770 reflections
a = 5.9181 (10) Åθ = 1.9–26.0°
b = 13.492 (2) ŵ = 0.23 mm1
c = 17.592 (3) ÅT = 273 K
V = 1404.7 (4) Å3Slab, colourless
Z = 40.50 × 0.14 × 0.09 mm
Bruker SMART APEX CCD area-detector diffractometer2763 independent reflections
Radiation source: fine-focus sealed tube2227 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 83.66 pixels mm-1θmax = 26.0°, θmin = 1.9°
ω scanh = −7→6
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −16→16
Tmin = 0.895, Tmax = 0.980l = −20→21
8711 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0655P)2 + 0.2181P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
2763 reflectionsΔρmax = 0.32 e Å3
163 parametersΔρmin = −0.18 e Å3
0 restraintsAbsolute structure: Flack (1983), 1141 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.63 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.1312 (2)0.79180 (7)0.57763 (7)0.0693 (4)
O10.3640 (5)0.47260 (17)0.56305 (13)0.0559 (7)
O20.7537 (5)0.5571 (2)0.67865 (15)0.0662 (8)
C60.2391 (6)0.6781 (2)0.58348 (19)0.0442 (8)
N20.3935 (5)0.6446 (2)0.63138 (15)0.0453 (7)
H2A0.43060.58360.62430.054*
N10.1602 (5)0.60835 (18)0.53095 (15)0.0427 (7)
H1A0.05730.62900.50030.051*
C50.2250 (6)0.5112 (2)0.52178 (18)0.0384 (8)
C80.7025 (7)0.6429 (3)0.71748 (19)0.0474 (9)
C90.8272 (8)0.6805 (3)0.7766 (2)0.0623 (11)
H9A0.95880.64890.79240.075*
C40.1096 (6)0.4544 (2)0.45732 (18)0.0445 (8)
C70.5083 (7)0.6910 (2)0.69201 (17)0.0434 (9)
C30.2134 (8)0.3508 (3)0.4531 (2)0.0682 (12)
H3A0.19010.31710.50050.102*
H3B0.37240.35620.44320.102*
H3C0.14270.31400.41280.102*
C20.1488 (9)0.5089 (3)0.3823 (2)0.0726 (13)
H2B0.08310.57380.38500.109*
H2C0.07980.47240.34160.109*
H2D0.30820.51460.37310.109*
C120.4381 (8)0.7757 (3)0.7293 (2)0.0599 (12)
H12A0.30610.80750.71420.072*
C110.5629 (10)0.8133 (3)0.7888 (2)0.0731 (15)
H11A0.51650.87110.81290.088*
C100.7544 (9)0.7660 (3)0.8125 (2)0.0714 (14)
H10A0.83650.79150.85320.086*
C130.9241 (8)0.4949 (3)0.7089 (2)0.0744 (13)
H13A0.94220.43790.67690.112*
H13B0.88170.47400.75910.112*
H13C1.06420.53070.71130.112*
C1−0.1417 (7)0.4454 (3)0.4742 (3)0.0734 (12)
H1B−0.20720.51030.47770.110*
H1C−0.16260.41100.52150.110*
H1D−0.21410.40900.43410.110*
U11U22U33U12U13U23
S10.0848 (8)0.0424 (5)0.0806 (7)0.0145 (6)−0.0263 (7)−0.0102 (5)
O10.0650 (17)0.0465 (13)0.0562 (14)0.0105 (13)−0.0175 (14)−0.0061 (11)
O20.068 (2)0.0701 (18)0.0609 (15)0.0127 (16)−0.0192 (15)−0.0080 (14)
C60.045 (2)0.0429 (18)0.0448 (18)−0.0036 (16)0.0009 (18)0.0016 (15)
N20.0535 (19)0.0360 (14)0.0465 (16)0.0025 (14)−0.0089 (15)−0.0053 (12)
N10.0445 (17)0.0396 (15)0.0440 (15)0.0033 (13)−0.0109 (14)−0.0057 (12)
C50.0366 (19)0.0403 (17)0.0385 (17)−0.0044 (15)0.0033 (15)0.0015 (14)
C80.054 (2)0.048 (2)0.0405 (18)−0.0111 (18)−0.0028 (17)0.0069 (16)
C90.061 (3)0.074 (3)0.051 (2)−0.020 (2)−0.010 (2)0.008 (2)
C40.039 (2)0.0484 (19)0.0462 (19)−0.0020 (17)0.0003 (16)−0.0068 (15)
C70.057 (2)0.0386 (18)0.0351 (18)−0.0119 (18)−0.0021 (17)0.0025 (14)
C30.074 (3)0.057 (2)0.074 (3)0.002 (2)−0.016 (2)−0.027 (2)
C20.100 (4)0.078 (3)0.039 (2)−0.011 (3)−0.004 (2)−0.0070 (19)
C120.085 (3)0.050 (2)0.045 (2)−0.007 (2)−0.003 (2)−0.0055 (17)
C110.119 (5)0.050 (2)0.050 (2)−0.015 (3)−0.002 (3)−0.0072 (18)
C100.100 (4)0.068 (3)0.046 (2)−0.041 (3)−0.016 (3)0.000 (2)
C130.063 (3)0.088 (3)0.073 (3)0.012 (2)−0.007 (2)0.008 (2)
C10.051 (3)0.080 (3)0.090 (3)−0.014 (2)−0.002 (2)−0.021 (2)
S1—C61.665 (3)C7—C121.382 (5)
O1—C51.215 (4)C3—H3A0.9600
O2—C81.378 (5)C3—H3B0.9600
O2—C131.416 (5)C3—H3C0.9600
C6—N21.323 (4)C2—H2B0.9600
C6—N11.399 (4)C2—H2C0.9600
N2—C71.411 (4)C2—H2D0.9600
N2—H2A0.8600C12—C111.378 (6)
N1—C51.375 (4)C12—H12A0.9300
N1—H1A0.8600C11—C101.366 (7)
C5—C41.530 (5)C11—H11A0.9300
C8—C91.373 (5)C10—H10A0.9300
C8—C71.394 (5)C13—H13A0.9600
C9—C101.385 (6)C13—H13B0.9600
C9—H9A0.9300C13—H13C0.9600
C4—C11.522 (5)C1—H1B0.9600
C4—C21.529 (5)C1—H1C0.9600
C4—C31.529 (5)C1—H1D0.9600
C8—O2—C13117.9 (3)C4—C3—H3C109.5
N2—C6—N1114.9 (3)H3A—C3—H3C109.5
N2—C6—S1128.3 (3)H3B—C3—H3C109.5
N1—C6—S1116.8 (3)C4—C2—H2B109.5
C6—N2—C7131.5 (3)C4—C2—H2C109.5
C6—N2—H2A114.3H2B—C2—H2C109.5
C7—N2—H2A114.3C4—C2—H2D109.5
C5—N1—C6128.7 (3)H2B—C2—H2D109.5
C5—N1—H1A115.7H2C—C2—H2D109.5
C6—N1—H1A115.7C11—C12—C7120.2 (4)
O1—C5—N1121.9 (3)C11—C12—H12A119.9
O1—C5—C4122.0 (3)C7—C12—H12A119.9
N1—C5—C4116.1 (3)C10—C11—C12120.4 (4)
C9—C8—O2124.6 (4)C10—C11—H11A119.8
C9—C8—C7121.0 (4)C12—C11—H11A119.8
O2—C8—C7114.4 (3)C11—C10—C9120.5 (4)
C8—C9—C10119.1 (4)C11—C10—H10A119.7
C8—C9—H9A120.5C9—C10—H10A119.7
C10—C9—H9A120.5O2—C13—H13A109.5
C1—C4—C2110.8 (4)O2—C13—H13B109.5
C1—C4—C3109.2 (3)H13A—C13—H13B109.5
C2—C4—C3109.6 (3)O2—C13—H13C109.5
C1—C4—C5109.4 (3)H13A—C13—H13C109.5
C2—C4—C5109.4 (3)H13B—C13—H13C109.5
C3—C4—C5108.4 (3)C4—C1—H1B109.5
C12—C7—C8118.7 (3)C4—C1—H1C109.5
C12—C7—N2125.5 (4)H1B—C1—H1C109.5
C8—C7—N2115.7 (3)C4—C1—H1D109.5
C4—C3—H3A109.5H1B—C1—H1D109.5
C4—C3—H3B109.5H1C—C1—H1D109.5
H3A—C3—H3B109.5
N1—C6—N2—C7−178.8 (3)O1—C5—C4—C3−4.2 (5)
S1—C6—N2—C72.0 (6)N1—C5—C4—C3176.6 (3)
N2—C6—N1—C5−1.5 (5)C9—C8—C7—C12−2.3 (5)
S1—C6—N1—C5177.9 (3)O2—C8—C7—C12177.6 (3)
C6—N1—C5—O12.2 (5)C9—C8—C7—N2−179.4 (3)
C6—N1—C5—C4−178.6 (3)O2—C8—C7—N20.5 (4)
C13—O2—C8—C910.6 (5)C6—N2—C7—C1219.9 (6)
C13—O2—C8—C7−169.3 (3)C6—N2—C7—C8−163.3 (3)
O2—C8—C9—C10−178.1 (3)C8—C7—C12—C112.2 (6)
C7—C8—C9—C101.7 (5)N2—C7—C12—C11178.9 (3)
O1—C5—C4—C1114.7 (4)C7—C12—C11—C10−1.4 (6)
N1—C5—C4—C1−64.5 (4)C12—C11—C10—C90.8 (6)
O1—C5—C4—C2−123.7 (4)C8—C9—C10—C11−1.0 (6)
N1—C5—C4—C257.1 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.892.619 (4)142
N2—H2A···O20.862.172.575 (4)109
C12—H12A···S10.932.623.235 (4)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.892.619 (4)142
N2—H2A⋯O20.862.172.575 (4)109
C12—H12A⋯S10.932.623.235 (4)124
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(3-Nitro-phen-yl)-N'-pivaloylthio-urea.

Authors:  M Sukeri M Yusof; Siti Hajar Muharam; M B Kassim; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21
  2 in total

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