| Literature DB >> 22589984 |
Maisara A Kadir, Bohari M Yamin, M Sukeri M Yusof.
Abstract
In the title compound, C(13)H(18)N(2)O(2)S, the carbonyl-thio-urea fragment is nearly planar with an r.m.s. deviation of 0.0096 Å. The dihedral angle between carbonyl-thio-urea group and the benzene ring is 19.16 (16)°. There are two intra-molecular N-H⋯O hydrogen bonds, which lead to two pseudo-six-membered rings. Weak intra-molecular C-H⋯S hydrogen bonding also occurs.Entities:
Year: 2012 PMID: 22589984 PMCID: PMC3344075 DOI: 10.1107/S1600536812010914
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18N2O2S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 770 reflections |
| θ = 1.9–26.0° | |
| µ = 0.23 mm−1 | |
| Slab, colourless | |
| 0.50 × 0.14 × 0.09 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 2763 independent reflections |
| Radiation source: fine-focus sealed tube | 2227 reflections with |
| Graphite monochromator | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 26.0°, θmin = 1.9° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 8711 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2763 reflections | Δρmax = 0.32 e Å−3 |
| 163 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1141 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.63 (15) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.1312 (2) | 0.79180 (7) | 0.57763 (7) | 0.0693 (4) | |
| O1 | 0.3640 (5) | 0.47260 (17) | 0.56305 (13) | 0.0559 (7) | |
| O2 | 0.7537 (5) | 0.5571 (2) | 0.67865 (15) | 0.0662 (8) | |
| C6 | 0.2391 (6) | 0.6781 (2) | 0.58348 (19) | 0.0442 (8) | |
| N2 | 0.3935 (5) | 0.6446 (2) | 0.63138 (15) | 0.0453 (7) | |
| H2A | 0.4306 | 0.5836 | 0.6243 | 0.054* | |
| N1 | 0.1602 (5) | 0.60835 (18) | 0.53095 (15) | 0.0427 (7) | |
| H1A | 0.0573 | 0.6290 | 0.5003 | 0.051* | |
| C5 | 0.2250 (6) | 0.5112 (2) | 0.52178 (18) | 0.0384 (8) | |
| C8 | 0.7025 (7) | 0.6429 (3) | 0.71748 (19) | 0.0474 (9) | |
| C9 | 0.8272 (8) | 0.6805 (3) | 0.7766 (2) | 0.0623 (11) | |
| H9A | 0.9588 | 0.6489 | 0.7924 | 0.075* | |
| C4 | 0.1096 (6) | 0.4544 (2) | 0.45732 (18) | 0.0445 (8) | |
| C7 | 0.5083 (7) | 0.6910 (2) | 0.69201 (17) | 0.0434 (9) | |
| C3 | 0.2134 (8) | 0.3508 (3) | 0.4531 (2) | 0.0682 (12) | |
| H3A | 0.1901 | 0.3171 | 0.5005 | 0.102* | |
| H3B | 0.3724 | 0.3562 | 0.4432 | 0.102* | |
| H3C | 0.1427 | 0.3140 | 0.4128 | 0.102* | |
| C2 | 0.1488 (9) | 0.5089 (3) | 0.3823 (2) | 0.0726 (13) | |
| H2B | 0.0831 | 0.5738 | 0.3850 | 0.109* | |
| H2C | 0.0798 | 0.4724 | 0.3416 | 0.109* | |
| H2D | 0.3082 | 0.5146 | 0.3731 | 0.109* | |
| C12 | 0.4381 (8) | 0.7757 (3) | 0.7293 (2) | 0.0599 (12) | |
| H12A | 0.3061 | 0.8075 | 0.7142 | 0.072* | |
| C11 | 0.5629 (10) | 0.8133 (3) | 0.7888 (2) | 0.0731 (15) | |
| H11A | 0.5165 | 0.8711 | 0.8129 | 0.088* | |
| C10 | 0.7544 (9) | 0.7660 (3) | 0.8125 (2) | 0.0714 (14) | |
| H10A | 0.8365 | 0.7915 | 0.8532 | 0.086* | |
| C13 | 0.9241 (8) | 0.4949 (3) | 0.7089 (2) | 0.0744 (13) | |
| H13A | 0.9422 | 0.4379 | 0.6769 | 0.112* | |
| H13B | 0.8817 | 0.4740 | 0.7591 | 0.112* | |
| H13C | 1.0642 | 0.5307 | 0.7113 | 0.112* | |
| C1 | −0.1417 (7) | 0.4454 (3) | 0.4742 (3) | 0.0734 (12) | |
| H1B | −0.2072 | 0.5103 | 0.4777 | 0.110* | |
| H1C | −0.1626 | 0.4110 | 0.5215 | 0.110* | |
| H1D | −0.2141 | 0.4090 | 0.4341 | 0.110* |
| S1 | 0.0848 (8) | 0.0424 (5) | 0.0806 (7) | 0.0145 (6) | −0.0263 (7) | −0.0102 (5) |
| O1 | 0.0650 (17) | 0.0465 (13) | 0.0562 (14) | 0.0105 (13) | −0.0175 (14) | −0.0061 (11) |
| O2 | 0.068 (2) | 0.0701 (18) | 0.0609 (15) | 0.0127 (16) | −0.0192 (15) | −0.0080 (14) |
| C6 | 0.045 (2) | 0.0429 (18) | 0.0448 (18) | −0.0036 (16) | 0.0009 (18) | 0.0016 (15) |
| N2 | 0.0535 (19) | 0.0360 (14) | 0.0465 (16) | 0.0025 (14) | −0.0089 (15) | −0.0053 (12) |
| N1 | 0.0445 (17) | 0.0396 (15) | 0.0440 (15) | 0.0033 (13) | −0.0109 (14) | −0.0057 (12) |
| C5 | 0.0366 (19) | 0.0403 (17) | 0.0385 (17) | −0.0044 (15) | 0.0033 (15) | 0.0015 (14) |
| C8 | 0.054 (2) | 0.048 (2) | 0.0405 (18) | −0.0111 (18) | −0.0028 (17) | 0.0069 (16) |
| C9 | 0.061 (3) | 0.074 (3) | 0.051 (2) | −0.020 (2) | −0.010 (2) | 0.008 (2) |
| C4 | 0.039 (2) | 0.0484 (19) | 0.0462 (19) | −0.0020 (17) | 0.0003 (16) | −0.0068 (15) |
| C7 | 0.057 (2) | 0.0386 (18) | 0.0351 (18) | −0.0119 (18) | −0.0021 (17) | 0.0025 (14) |
| C3 | 0.074 (3) | 0.057 (2) | 0.074 (3) | 0.002 (2) | −0.016 (2) | −0.027 (2) |
| C2 | 0.100 (4) | 0.078 (3) | 0.039 (2) | −0.011 (3) | −0.004 (2) | −0.0070 (19) |
| C12 | 0.085 (3) | 0.050 (2) | 0.045 (2) | −0.007 (2) | −0.003 (2) | −0.0055 (17) |
| C11 | 0.119 (5) | 0.050 (2) | 0.050 (2) | −0.015 (3) | −0.002 (3) | −0.0072 (18) |
| C10 | 0.100 (4) | 0.068 (3) | 0.046 (2) | −0.041 (3) | −0.016 (3) | 0.000 (2) |
| C13 | 0.063 (3) | 0.088 (3) | 0.073 (3) | 0.012 (2) | −0.007 (2) | 0.008 (2) |
| C1 | 0.051 (3) | 0.080 (3) | 0.090 (3) | −0.014 (2) | −0.002 (2) | −0.021 (2) |
| S1—C6 | 1.665 (3) | C7—C12 | 1.382 (5) |
| O1—C5 | 1.215 (4) | C3—H3A | 0.9600 |
| O2—C8 | 1.378 (5) | C3—H3B | 0.9600 |
| O2—C13 | 1.416 (5) | C3—H3C | 0.9600 |
| C6—N2 | 1.323 (4) | C2—H2B | 0.9600 |
| C6—N1 | 1.399 (4) | C2—H2C | 0.9600 |
| N2—C7 | 1.411 (4) | C2—H2D | 0.9600 |
| N2—H2A | 0.8600 | C12—C11 | 1.378 (6) |
| N1—C5 | 1.375 (4) | C12—H12A | 0.9300 |
| N1—H1A | 0.8600 | C11—C10 | 1.366 (7) |
| C5—C4 | 1.530 (5) | C11—H11A | 0.9300 |
| C8—C9 | 1.373 (5) | C10—H10A | 0.9300 |
| C8—C7 | 1.394 (5) | C13—H13A | 0.9600 |
| C9—C10 | 1.385 (6) | C13—H13B | 0.9600 |
| C9—H9A | 0.9300 | C13—H13C | 0.9600 |
| C4—C1 | 1.522 (5) | C1—H1B | 0.9600 |
| C4—C2 | 1.529 (5) | C1—H1C | 0.9600 |
| C4—C3 | 1.529 (5) | C1—H1D | 0.9600 |
| C8—O2—C13 | 117.9 (3) | C4—C3—H3C | 109.5 |
| N2—C6—N1 | 114.9 (3) | H3A—C3—H3C | 109.5 |
| N2—C6—S1 | 128.3 (3) | H3B—C3—H3C | 109.5 |
| N1—C6—S1 | 116.8 (3) | C4—C2—H2B | 109.5 |
| C6—N2—C7 | 131.5 (3) | C4—C2—H2C | 109.5 |
| C6—N2—H2A | 114.3 | H2B—C2—H2C | 109.5 |
| C7—N2—H2A | 114.3 | C4—C2—H2D | 109.5 |
| C5—N1—C6 | 128.7 (3) | H2B—C2—H2D | 109.5 |
| C5—N1—H1A | 115.7 | H2C—C2—H2D | 109.5 |
| C6—N1—H1A | 115.7 | C11—C12—C7 | 120.2 (4) |
| O1—C5—N1 | 121.9 (3) | C11—C12—H12A | 119.9 |
| O1—C5—C4 | 122.0 (3) | C7—C12—H12A | 119.9 |
| N1—C5—C4 | 116.1 (3) | C10—C11—C12 | 120.4 (4) |
| C9—C8—O2 | 124.6 (4) | C10—C11—H11A | 119.8 |
| C9—C8—C7 | 121.0 (4) | C12—C11—H11A | 119.8 |
| O2—C8—C7 | 114.4 (3) | C11—C10—C9 | 120.5 (4) |
| C8—C9—C10 | 119.1 (4) | C11—C10—H10A | 119.7 |
| C8—C9—H9A | 120.5 | C9—C10—H10A | 119.7 |
| C10—C9—H9A | 120.5 | O2—C13—H13A | 109.5 |
| C1—C4—C2 | 110.8 (4) | O2—C13—H13B | 109.5 |
| C1—C4—C3 | 109.2 (3) | H13A—C13—H13B | 109.5 |
| C2—C4—C3 | 109.6 (3) | O2—C13—H13C | 109.5 |
| C1—C4—C5 | 109.4 (3) | H13A—C13—H13C | 109.5 |
| C2—C4—C5 | 109.4 (3) | H13B—C13—H13C | 109.5 |
| C3—C4—C5 | 108.4 (3) | C4—C1—H1B | 109.5 |
| C12—C7—C8 | 118.7 (3) | C4—C1—H1C | 109.5 |
| C12—C7—N2 | 125.5 (4) | H1B—C1—H1C | 109.5 |
| C8—C7—N2 | 115.7 (3) | C4—C1—H1D | 109.5 |
| C4—C3—H3A | 109.5 | H1B—C1—H1D | 109.5 |
| C4—C3—H3B | 109.5 | H1C—C1—H1D | 109.5 |
| H3A—C3—H3B | 109.5 | ||
| N1—C6—N2—C7 | −178.8 (3) | O1—C5—C4—C3 | −4.2 (5) |
| S1—C6—N2—C7 | 2.0 (6) | N1—C5—C4—C3 | 176.6 (3) |
| N2—C6—N1—C5 | −1.5 (5) | C9—C8—C7—C12 | −2.3 (5) |
| S1—C6—N1—C5 | 177.9 (3) | O2—C8—C7—C12 | 177.6 (3) |
| C6—N1—C5—O1 | 2.2 (5) | C9—C8—C7—N2 | −179.4 (3) |
| C6—N1—C5—C4 | −178.6 (3) | O2—C8—C7—N2 | 0.5 (4) |
| C13—O2—C8—C9 | 10.6 (5) | C6—N2—C7—C12 | 19.9 (6) |
| C13—O2—C8—C7 | −169.3 (3) | C6—N2—C7—C8 | −163.3 (3) |
| O2—C8—C9—C10 | −178.1 (3) | C8—C7—C12—C11 | 2.2 (6) |
| C7—C8—C9—C10 | 1.7 (5) | N2—C7—C12—C11 | 178.9 (3) |
| O1—C5—C4—C1 | 114.7 (4) | C7—C12—C11—C10 | −1.4 (6) |
| N1—C5—C4—C1 | −64.5 (4) | C12—C11—C10—C9 | 0.8 (6) |
| O1—C5—C4—C2 | −123.7 (4) | C8—C9—C10—C11 | −1.0 (6) |
| N1—C5—C4—C2 | 57.1 (4) |
| H··· | ||||
| N2—H2 | 0.86 | 1.89 | 2.619 (4) | 142 |
| N2—H2 | 0.86 | 2.17 | 2.575 (4) | 109 |
| C12—H12 | 0.93 | 2.62 | 3.235 (4) | 124 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.89 | 2.619 (4) | 142 |
| N2—H2 | 0.86 | 2.17 | 2.575 (4) | 109 |
| C12—H12 | 0.93 | 2.62 | 3.235 (4) | 124 |