Literature DB >> 21202407

N-(2-Phenyl-imidazo[1,2-a]pyridin-3-yl)acetamide.

Abderrahmane Anaflous, Hanane Albay, Nour-Eddine Benchat, Brahim El Bali, Michal Dušek, Karla Fejfarová.   

Abstract

The crystal structure of the title compound, C(15)H(13)N(3)O, consists of columns of mol-ecules that are inter-connected by N-H⋯N hydrogen bonds in the direction of the b axis. The torsion angle between the imidazo[1,2-a]pyridine ring system and the phenyl ring is 9.04 (5)°.

Entities:  

Year:  2008        PMID: 21202407      PMCID: PMC2961311          DOI: 10.1107/S1600536808011501

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see Anaflous et al. (2004 ▶); Gueffier et al. (1998 ▶); Mavel et al. (2002 ▶).

Experimental

Crystal data

C15H13N3O M = 251.3 Monoclinic, a = 13.9680 (5) Å b = 5.6784 (2) Å c = 15.8145 (5) Å β = 101.039 (3)° V = 1231.13 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 120 K 0.58 × 0.25 × 0.17 mm

Data collection

Oxford Diffraction Xcalibur2 diffractometer with Sapphire2 CCD detector Absorption correction: none 15703 measured reflections 2556 independent reflections 1544 reflections with I > 3σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.084 S = 1.00 2556 reflections 175 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 1999 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011501/fj2112sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011501/fj2112Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3OF000 = 528
Mr = 251.3Dx = 1.355 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4755 reflections
a = 13.9680 (5) Åθ = 2.6–26.5º
b = 5.6784 (2) ŵ = 0.09 mm1
c = 15.8145 (5) ÅT = 120 K
β = 101.039 (3)ºPrism, colorless
V = 1231.13 (7) Å30.58 × 0.25 × 0.17 mm
Z = 4
Oxford Diffraction Xcalibur2 diffractometer with Sapphire2 CCD detector2556 independent reflections
Radiation source: X-ray tube1544 reflections with I > 3σ(I)
Monochromator: graphiteRint = 0.054
Detector resolution: 8.3438 pixels mm-1θmax = 26.5º
T = 120 Kθmin = 2.6º
Rotation method data acquisition using ω scansh = −17→17
Absorption correction: nonek = −7→7
15703 measured reflectionsl = −19→19
Refinement on F245 constraints
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
S = 1.00(Δ/σ)max = 0.006
2556 reflectionsΔρmax = 0.17 e Å3
175 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: none
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.All the H atoms were discernible in difference Fourier maps and could be refined to reasonable geometry. According to standard procedures for organic compounds the H atoms bonded to C atoms were constrained to ideal positions. The N—H distances were restrained to 0.87 Å with σ 0.01. The isotropic atomic displacement parameters of hydrogen atoms were evaluated as 1.2*Ueq of the parent atom.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
N10.61764 (8)−0.2561 (2)0.47985 (7)0.0230 (4)
N20.56626 (7)0.05089 (18)0.39364 (7)0.0206 (4)
N30.70718 (11)0.3084 (2)0.41732 (9)0.0235 (5)
O10.79160 (9)0.1417 (2)0.32433 (8)0.0298 (4)
C10.69090 (11)−0.0912 (2)0.48648 (9)0.0210 (5)
C20.66186 (9)0.09842 (19)0.43398 (8)0.0224 (4)
C30.54173 (10)−0.1658 (2)0.42431 (9)0.0211 (5)
C40.44673 (11)−0.2519 (3)0.39578 (9)0.0238 (5)
C50.38234 (11)−0.1217 (3)0.33930 (9)0.0262 (5)
C60.41070 (11)0.0979 (2)0.30893 (9)0.0272 (5)
C70.50162 (10)0.1807 (3)0.33604 (9)0.0233 (5)
C80.78417 (11)−0.1346 (2)0.54688 (10)0.0220 (6)
C90.79074 (12)−0.3221 (3)0.60385 (10)0.0285 (5)
C100.87592 (12)−0.3699 (3)0.66086 (10)0.0317 (5)
C110.95689 (11)−0.2316 (3)0.66266 (10)0.0290 (5)
C120.95210 (12)−0.0434 (3)0.60733 (10)0.0373 (6)
C130.86634 (12)0.0062 (3)0.54974 (11)0.0356 (6)
C140.77211 (11)0.3171 (3)0.36247 (10)0.0220 (5)
C150.81873 (12)0.5518 (3)0.35553 (11)0.0294 (6)
H3n0.6911 (10)0.4370 (19)0.4423 (9)0.0282*
H40.42756−0.4008120.4159580.0285*
H50.317152−0.178690.3197560.0314*
H60.3646630.1878880.2687760.0327*
H70.5208960.3288740.3152840.028*
H90.734759−0.4204450.6035020.0341*
H100.878784−0.5008820.6996480.038*
H111.016393−0.2659610.7022460.0348*
H121.0084360.0543040.6085240.0447*
H130.8636460.138620.5116080.0427*
H15a0.773810.674510.363050.0353*
H15b0.8764740.5649150.3993120.0353*
H15c0.8358 (10)0.5666 (19)0.2998 (9)0.0353*
U11U22U33U12U13U23
N10.0273 (7)0.0188 (6)0.0250 (7)−0.0018 (5)0.0100 (6)−0.0017 (5)
N20.0230 (7)0.0198 (6)0.0205 (6)0.0005 (5)0.0079 (5)−0.0023 (5)
N30.0343 (9)0.0126 (7)0.0271 (8)−0.0014 (7)0.0148 (7)−0.0020 (7)
O10.0405 (7)0.0228 (6)0.0305 (7)0.0012 (6)0.0176 (6)−0.0026 (5)
C10.0263 (9)0.0171 (7)0.0225 (8)−0.0029 (7)0.0119 (7)−0.0042 (6)
C20.0267 (8)0.0183 (6)0.0245 (7)−0.0015 (6)0.0108 (6)−0.0028 (5)
C30.0275 (9)0.0186 (7)0.0192 (8)0.0014 (7)0.0098 (7)−0.0021 (6)
C40.0304 (9)0.0210 (8)0.0227 (8)−0.0023 (7)0.0120 (7)−0.0040 (6)
C50.0217 (9)0.0333 (8)0.0247 (8)−0.0023 (7)0.0074 (7)−0.0094 (7)
C60.0317 (8)0.0309 (8)0.0195 (8)0.0080 (6)0.0062 (7)0.0003 (6)
C70.0319 (8)0.0197 (8)0.0207 (8)0.0027 (7)0.0112 (7)−0.0005 (6)
C80.0226 (10)0.0222 (8)0.0222 (9)0.0012 (7)0.0068 (8)−0.0058 (7)
C90.0296 (9)0.0261 (9)0.0308 (9)−0.0033 (8)0.0086 (7)0.0015 (7)
C100.0338 (9)0.0285 (8)0.0327 (9)0.0036 (7)0.0061 (8)0.0048 (7)
C110.0282 (8)0.0324 (9)0.0258 (8)0.0039 (7)0.0034 (7)−0.0015 (7)
C120.0293 (10)0.0377 (9)0.0425 (10)−0.0114 (8)0.0013 (8)0.0022 (7)
C130.0394 (10)0.0306 (9)0.0357 (10)−0.0038 (8)0.0040 (8)0.0111 (8)
C140.0251 (10)0.0210 (9)0.0203 (8)0.0030 (7)0.0055 (7)0.0034 (7)
C150.0335 (10)0.0248 (10)0.0331 (11)−0.0032 (8)0.0144 (9)0.0020 (9)
N1—C11.3763 (18)C6—H60.96
N1—C31.3424 (17)C7—H70.96
N2—C21.3916 (15)C8—C91.387 (2)
N2—C31.3894 (17)C8—C131.393 (2)
N2—C71.3689 (16)C9—C101.375 (2)
N3—C21.3984 (19)C9—H90.96
N3—C141.371 (2)C10—C111.373 (2)
N3—H3n0.880 (12)C10—H100.96
O1—C141.222 (2)C11—C121.375 (2)
C1—C21.3727 (18)C11—H110.96
C1—C81.481 (2)C12—C131.388 (2)
C3—C41.405 (2)C12—H120.96
C4—C51.359 (2)C13—H130.96
C4—H40.96C14—C151.497 (2)
C5—C61.419 (2)C15—H15a0.96
C5—H50.96C15—H15b0.96
C6—C71.345 (2)C15—H15c0.960 (15)
C1—N1—C3105.82 (11)C1—C8—C9119.17 (14)
C2—N2—C3106.91 (10)C1—C8—C13122.90 (14)
C2—N2—C7130.80 (11)C9—C8—C13117.93 (14)
C3—N2—C7122.27 (11)C8—C9—C10121.26 (15)
C2—N3—C14121.89 (13)C8—C9—H9119.372
C2—N3—H3n117.3 (9)C10—C9—H9119.371
C14—N3—H3n120.8 (9)C9—C10—C11120.43 (14)
N1—C1—C2110.99 (11)C9—C10—H10119.784
N1—C1—C8119.03 (12)C11—C10—H10119.784
C2—C1—C8129.96 (13)C10—C11—C12119.48 (13)
N2—C2—N3120.55 (11)C10—C11—H11120.26
N2—C2—C1105.77 (11)C12—C11—H11120.259
N3—C2—C1133.68 (12)C11—C12—C13120.42 (15)
N1—C3—N2110.49 (11)C11—C12—H12119.792
N1—C3—C4131.02 (13)C13—C12—H12119.792
N2—C3—C4118.48 (12)C8—C13—C12120.48 (15)
C3—C4—C5119.18 (14)C8—C13—H13119.758
C3—C4—H4120.41C12—C13—H13119.758
C5—C4—H4120.41N3—C14—O1121.32 (15)
C4—C5—C6120.52 (13)N3—C14—C15115.37 (14)
C4—C5—H5119.739O1—C14—C15123.28 (16)
C6—C5—H5119.74C14—C15—H15a109.471
C5—C6—C7120.46 (13)C14—C15—H15b109.472
C5—C6—H6119.768C14—C15—H15c109.5 (7)
C7—C6—H6119.769H15a—C15—H15b109.472
N2—C7—C6119.07 (13)H15a—C15—H15c109.471
N2—C7—H7120.466H15b—C15—H15c109.47
C6—C7—H7120.465
D—H···AD—HH···AD···AD—H···A
N3—H3n···N1i0.880 (12)2.162 (12)3.0219 (16)165.4 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3n⋯N1i0.880 (12)2.162 (12)3.0219 (16)165.4 (13)

Symmetry code: (i) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

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4.  Crystal Correlation Of Heterocyclic Imidazo[1,2-a]pyridine Analogues and Their Anticholinesterase Potential Evaluation.

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