Literature DB >> 21202263

(2,2'-Bipyridine-κN,N')[N-(2-oxido-1-naphthyl-idene)threoninato-κO,N,O]copper(II).

Zhanglei Qiu1, Lianzhi Li, Yan Liu, Tao Xu, Daqi Wang.   

Abstract

In the title complex, [Cu(C(15)H(13)NO(4))(C(10)H(8)N(2))], the Schiff base ligand is derived from the condensation of 2-hydr-oxy-1-naphthaldehyde and l-threonine. The Cu(II) atom is five-coordinated by one N atom and two O atoms from the Schiff base ligand and by two N atoms from a 2,2'-bipyridine ligand in a distorted square-pyramidal geometry. In the crystal structure, the combination of inter-molecular O-H⋯O and C-H⋯O hydrogen bonds leads to a two-dimensional network.

Entities:  

Year:  2008        PMID: 21202263      PMCID: PMC2961289          DOI: 10.1107/S1600536808012191

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Garnovski et al. (1993 ▶); Kalagouda et al. (2006 ▶); Wang et al. (1999 ▶).

Experimental

Crystal data

[Cu(C15H13NO4)(C10H8N2)] M = 490.99 Orthorhombic, a = 9.955 (2) Å b = 12.180 (3) Å c = 18.438 (4) Å V = 2235.6 (9) Å3 Z = 4 Mo Kα radiation μ = 1.01 mm−1 T = 298 (2) K 0.29 × 0.28 × 0.16 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.757, T max = 0.855 14242 measured reflections 5278 independent reflections 4243 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.088 S = 1.04 5278 reflections 300 parameters 492 restraints H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.54 e Å−3 Absolute structure: Flack (1983 ▶), 2229 Friedel pairs Flack parameter: −0.005 (13) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808012191/hy2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012191/hy2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C15H13NO4)(C10H8N2)]F000 = 1012
Mr = 490.99Dx = 1.459 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5604 reflections
a = 9.955 (2) Åθ = 2.3–26.1º
b = 12.180 (3) ŵ = 1.01 mm1
c = 18.438 (4) ÅT = 298 (2) K
V = 2235.6 (9) Å3Block, blue
Z = 40.29 × 0.28 × 0.16 mm
Bruker SMART APEX CCD area-detector diffractometer5278 independent reflections
Radiation source: fine-focus sealed tube4243 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.027
T = 298(2) Kθmax = 28.3º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.757, Tmax = 0.855k = −14→16
14242 measured reflectionsl = −20→24
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034  w = 1/[σ2(Fo2) + (0.0472P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.089(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.32 e Å3
5278 reflectionsΔρmin = −0.54 e Å3
300 parametersExtinction correction: none
492 restraintsAbsolute structure: Flack (1983), 2229 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.005 (13)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cu10.32501 (3)1.00767 (2)0.977106 (17)0.03806 (10)
N10.1622 (2)1.08781 (15)0.95744 (11)0.0313 (4)
N20.2672 (3)0.89079 (19)1.06492 (15)0.0491 (6)
N30.5005 (2)0.93672 (19)1.00252 (14)0.0480 (6)
O40.3191 (2)0.93362 (17)0.88490 (11)0.0498 (5)
O20.29386 (19)1.31490 (16)1.05070 (12)0.0512 (5)
O10.37076 (18)1.14608 (15)1.03256 (11)0.0424 (4)
O3−0.05190 (19)1.07490 (16)1.05400 (12)0.0474 (5)
H3−0.09611.10821.02360.071*
C10.2783 (3)1.2178 (2)1.03223 (14)0.0371 (6)
C20.1394 (3)1.17825 (19)1.00763 (13)0.0319 (5)
H280.09121.23790.98320.038*
C30.0596 (3)1.1395 (2)1.07501 (15)0.0368 (6)
H290.11941.09251.10370.044*
C40.0177 (3)1.2351 (3)1.12313 (16)0.0510 (7)
H21A−0.02851.20761.16510.077*
H21B−0.04091.28301.09650.077*
H21C0.09601.27501.13820.077*
C50.0856 (2)1.0765 (2)0.90139 (14)0.0325 (5)
H110.01251.12370.89780.039*
C60.1028 (2)0.9982 (2)0.84450 (12)0.0363 (5)
C70.2228 (3)0.9366 (2)0.83774 (15)0.0415 (6)
C80.2402 (3)0.8722 (3)0.77391 (16)0.0545 (8)
H180.31990.83350.76780.065*
C90.1453 (4)0.8654 (3)0.72205 (16)0.0560 (8)
H190.16150.82240.68130.067*
C100.0215 (3)0.9221 (2)0.72803 (15)0.0452 (6)
C11−0.0016 (3)0.9893 (2)0.78988 (13)0.0397 (6)
C12−0.1269 (3)1.0408 (2)0.79527 (17)0.0495 (7)
H27−0.14531.08450.83540.059*
C13−0.2234 (4)1.0284 (3)0.74247 (19)0.0588 (8)
H26−0.30551.06400.74750.071*
C14−0.2000 (4)0.9635 (3)0.68174 (18)0.0621 (9)
H25−0.26590.95560.64640.074*
C15−0.0795 (4)0.9115 (3)0.67446 (17)0.0572 (8)
H15−0.06340.86850.63370.069*
C160.1466 (4)0.8711 (3)1.0941 (2)0.0660 (9)
H170.07010.89761.07100.079*
C170.1333 (6)0.8119 (3)1.1577 (3)0.0965 (13)
H220.04880.79991.17770.116*
C180.2463 (6)0.7710 (4)1.1912 (3)0.1063 (14)
H360.23870.73021.23360.128*
C190.3693 (5)0.7909 (3)1.1617 (3)0.0883 (12)
H370.44680.76651.18490.106*
C200.3776 (4)0.8483 (2)1.09632 (19)0.0579 (8)
C210.5052 (3)0.8664 (2)1.05811 (19)0.0524 (7)
C220.6242 (4)0.8126 (3)1.0751 (2)0.0701 (10)
H330.62710.76241.11310.084*
C230.7371 (4)0.8343 (3)1.0354 (3)0.0775 (11)
H230.81690.79861.04680.093*
C240.7348 (3)0.9067 (3)0.9799 (3)0.0719 (10)
H240.81180.92220.95320.086*
C250.6136 (3)0.9570 (3)0.9642 (2)0.0634 (9)
H320.60971.00660.92590.076*
U11U22U33U12U13U23
Cu10.03383 (16)0.04027 (16)0.04008 (17)0.00393 (14)−0.00421 (14)0.00230 (15)
N10.0301 (10)0.0347 (10)0.0291 (11)0.0002 (9)0.0011 (9)−0.0009 (8)
N20.0536 (15)0.0405 (13)0.0531 (16)−0.0017 (11)−0.0030 (13)0.0083 (12)
N30.0409 (13)0.0384 (13)0.0647 (17)0.0035 (10)−0.0093 (12)0.0003 (11)
O40.0456 (11)0.0590 (12)0.0448 (12)0.0165 (10)−0.0016 (11)−0.0084 (9)
O20.0434 (11)0.0466 (11)0.0636 (14)−0.0096 (9)0.0033 (10)−0.0158 (10)
O10.0341 (9)0.0460 (10)0.0470 (12)−0.0025 (8)−0.0092 (9)−0.0015 (9)
O30.0356 (10)0.0553 (12)0.0514 (13)−0.0103 (9)0.0020 (9)0.0047 (10)
C10.0398 (13)0.0424 (13)0.0291 (13)−0.0075 (11)0.0053 (11)−0.0008 (11)
C20.0348 (12)0.0333 (12)0.0275 (12)0.0016 (10)−0.0021 (10)−0.0008 (9)
C30.0339 (13)0.0442 (14)0.0323 (13)−0.0029 (11)0.0013 (11)0.0017 (11)
C40.0536 (18)0.0621 (19)0.0374 (15)0.0016 (15)0.0060 (14)−0.0050 (14)
C50.0326 (12)0.0360 (12)0.0288 (12)0.0016 (10)−0.0001 (10)0.0002 (10)
C60.0456 (13)0.0364 (12)0.0270 (11)0.0003 (13)0.0012 (10)−0.0009 (11)
C70.0486 (15)0.0413 (14)0.0346 (14)0.0009 (12)0.0065 (12)−0.0036 (11)
C80.0637 (19)0.0570 (17)0.0428 (17)0.0105 (15)0.0104 (15)−0.0090 (14)
C90.074 (2)0.0580 (16)0.0354 (15)−0.0053 (16)0.0078 (15)−0.0131 (13)
C100.0586 (16)0.0469 (15)0.0299 (13)−0.0123 (13)0.0007 (13)−0.0025 (11)
C110.0510 (14)0.0392 (13)0.0291 (11)−0.0082 (13)−0.0017 (11)0.0002 (11)
C120.0552 (16)0.0542 (15)0.0392 (15)−0.0003 (13)−0.0115 (13)−0.0065 (12)
C130.0596 (17)0.065 (2)0.0515 (17)−0.0031 (15)−0.0187 (15)−0.0011 (15)
C140.076 (2)0.0662 (18)0.0440 (16)−0.0210 (16)−0.0221 (16)0.0030 (14)
C150.079 (2)0.0582 (17)0.0344 (15)−0.0206 (16)−0.0067 (15)−0.0039 (13)
C160.074 (2)0.0503 (17)0.074 (2)−0.0007 (16)0.0131 (19)0.0167 (16)
C170.104 (3)0.085 (3)0.101 (3)0.002 (2)0.034 (3)0.038 (2)
C180.128 (3)0.098 (3)0.092 (3)0.009 (3)0.010 (3)0.049 (2)
C190.100 (3)0.080 (2)0.084 (2)0.015 (2)−0.007 (2)0.035 (2)
C200.0753 (19)0.0387 (14)0.0597 (18)0.0037 (15)−0.0113 (17)0.0086 (14)
C210.0575 (17)0.0352 (14)0.0645 (18)0.0071 (13)−0.0215 (15)−0.0033 (14)
C220.076 (2)0.0502 (17)0.084 (2)0.0146 (17)−0.029 (2)−0.0012 (17)
C230.060 (2)0.063 (2)0.109 (3)0.0182 (17)−0.031 (2)−0.020 (2)
C240.0489 (17)0.0566 (18)0.110 (3)0.0058 (15)−0.010 (2)−0.015 (2)
C250.0492 (17)0.0481 (16)0.093 (2)0.0030 (13)−0.0050 (18)−0.0026 (16)
Cu1—O41.925 (2)C8—H180.9300
Cu1—N11.926 (2)C9—C101.417 (5)
Cu1—N32.005 (2)C9—H190.9300
Cu1—O12.0236 (18)C10—C151.415 (4)
Cu1—N22.231 (3)C10—C111.422 (4)
N1—C51.292 (3)C11—C121.400 (4)
N1—C21.457 (3)C12—C131.376 (4)
N2—C161.338 (4)C12—H270.9300
N2—C201.345 (4)C13—C141.390 (5)
N3—C211.337 (4)C13—H260.9300
N3—C251.352 (4)C14—C151.363 (5)
O4—C71.295 (4)C14—H250.9300
O2—C11.240 (3)C15—H150.9300
O1—C11.269 (3)C16—C171.384 (5)
O3—C31.415 (3)C16—H170.9300
O3—H30.8200C17—C181.376 (7)
C1—C21.533 (4)C17—H220.9300
C2—C31.548 (4)C18—C191.362 (7)
C2—H280.9800C18—H360.9300
C3—C41.522 (4)C19—C201.397 (5)
C3—H290.9800C19—H370.9300
C4—H21A0.9600C20—C211.469 (5)
C4—H21B0.9600C21—C221.390 (5)
C4—H21C0.9600C22—C231.366 (6)
C5—C61.428 (3)C22—H330.9300
C5—H110.9300C23—C241.352 (6)
C6—C71.417 (4)C23—H230.9300
C6—C111.452 (3)C24—C251.384 (5)
C7—C81.425 (4)C24—H240.9300
C8—C91.346 (5)C25—H320.9300
O4—Cu1—N192.62 (8)C9—C8—H18118.8
O4—Cu1—N391.77 (9)C7—C8—H18118.8
N1—Cu1—N3174.65 (9)C8—C9—C10121.6 (3)
O4—Cu1—O1147.49 (9)C8—C9—H19119.2
N1—Cu1—O182.08 (8)C10—C9—H19119.2
N3—Cu1—O192.57 (9)C15—C10—C9121.3 (3)
O4—Cu1—N2109.51 (10)C15—C10—C11119.8 (3)
N1—Cu1—N2104.07 (9)C9—C10—C11118.9 (3)
N3—Cu1—N277.29 (10)C12—C11—C10117.3 (3)
O1—Cu1—N2102.88 (9)C12—C11—C6123.7 (2)
C5—N1—C2119.8 (2)C10—C11—C6118.9 (3)
C5—N1—Cu1126.40 (17)C13—C12—C11121.5 (3)
C2—N1—Cu1113.27 (15)C13—C12—H27119.3
C16—N2—C20119.4 (3)C11—C12—H27119.3
C16—N2—Cu1129.6 (2)C12—C13—C14121.0 (3)
C20—N2—Cu1110.3 (2)C12—C13—H26119.5
C21—N3—C25119.3 (3)C14—C13—H26119.5
C21—N3—Cu1119.1 (2)C15—C14—C13119.4 (3)
C25—N3—Cu1121.6 (2)C15—C14—H25120.3
C7—O4—Cu1127.02 (18)C13—C14—H25120.3
C1—O1—Cu1114.08 (16)C14—C15—C10120.9 (3)
C3—O3—H3109.5C14—C15—H15119.5
O2—C1—O1124.4 (2)C10—C15—H15119.5
O2—C1—C2119.6 (2)N2—C16—C17121.3 (4)
O1—C1—C2116.1 (2)N2—C16—H17119.3
N1—C2—C1106.54 (19)C17—C16—H17119.3
N1—C2—C3111.06 (19)C18—C17—C16119.4 (5)
C1—C2—C3108.7 (2)C18—C17—H22120.3
N1—C2—H28110.1C16—C17—H22120.3
C1—C2—H28110.1C19—C18—C17119.5 (4)
C3—C2—H28110.1C19—C18—H36120.3
O3—C3—C4111.7 (2)C17—C18—H36120.3
O3—C3—C2110.6 (2)C18—C19—C20119.1 (4)
C4—C3—C2112.0 (2)C18—C19—H37120.4
O3—C3—H29107.4C20—C19—H37120.4
C4—C3—H29107.4N2—C20—C19121.1 (4)
C2—C3—H29107.4N2—C20—C21116.2 (3)
C3—C4—H21A109.5C19—C20—C21122.7 (4)
C3—C4—H21B109.5N3—C21—C22120.3 (4)
H21A—C4—H21B109.5N3—C21—C20115.7 (3)
C3—C4—H21C109.5C22—C21—C20123.9 (3)
H21A—C4—H21C109.5C23—C22—C21119.3 (4)
H21B—C4—H21C109.5C23—C22—H33120.4
N1—C5—C6126.0 (2)C21—C22—H33120.4
N1—C5—H11117.0C24—C23—C22121.2 (3)
C6—C5—H11117.0C24—C23—H23119.4
C7—C6—C5121.3 (2)C22—C23—H23119.4
C7—C6—C11120.2 (2)C23—C24—C25117.5 (4)
C5—C6—C11118.3 (2)C23—C24—H24121.3
O4—C7—C6125.5 (2)C25—C24—H24121.3
O4—C7—C8116.7 (3)N3—C25—C24122.4 (4)
C6—C7—C8117.8 (3)N3—C25—H32118.8
C9—C8—C7122.4 (3)C24—C25—H32118.8
C1—C2—C3—C471.0 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.821.992.808 (3)178
C5—H11···O2i0.932.493.311 (3)147
C12—H27···O2i0.932.503.431 (4)174
C14—H25···O3ii0.932.523.445 (4)177
Cu1—O41.925 (2)
Cu1—N11.926 (2)
Cu1—N32.005 (2)
Cu1—O12.0236 (18)
Cu1—N22.231 (3)
O4—Cu1—N192.62 (8)
O4—Cu1—N391.77 (9)
N1—Cu1—N3174.65 (9)
O4—Cu1—O1147.49 (9)
N1—Cu1—O182.08 (8)
N3—Cu1—O192.57 (9)
O4—Cu1—N2109.51 (10)
N1—Cu1—N2104.07 (9)
N3—Cu1—N277.29 (10)
O1—Cu1—N2102.88 (9)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.821.992.808 (3)178
C5—H11⋯O2i0.932.493.311 (3)147
C12—H27⋯O2i0.932.503.431 (4)174
C14—H25⋯O3ii0.932.523.445 (4)177

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  6 in total

1.  [N-(3-Meth-oxy-2-oxidobenzyl-idene-κO)threoninato-κO,N](1,10-phenanthroline-κN,N')copper(II) hemihydrate.

Authors:  Buqin Jing; Lianzhi Li; Jianfang Dong; Jinghong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07

2.  {N-[(2-Oxido-1-naphth-yl)methyl-idene]-serinato-κO,N,O'}(1,10-phenanthroline-κN,N')copper(II).

Authors:  Jinghong Li; Zhenghua Guo; Lianzhi Li; Daqi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

3.  {3-Methyl-2-[(1-oxido-2-naphth-yl)methyl-idene-amino-κO,N]butano-ato-κO}(1H-pyrazole-κN)nickel(II).

Authors:  Qin-Long Peng; Gan-Qing Zhao; Li-Hua Chen; Ling-Wei Xue
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

4.  {2-(4-Hy-droxy-phen-yl)-2-[(3-meth-oxy-2-oxidobenzyl-idene)amino-κO,N]propanoato-κO}(1,10-phenanthroline-κN,N')copper(II) dihydrate.

Authors:  Xuewei Pu; Lianzhi Li; Jianfang Dong; Buqin Jing
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

5.  [N-(3-Meth-oxy-2-oxidobenzyl-idene-κO)leucinato-κN,O](1,10-phenanthroline-κN,N')copper(II) monohydrate.

Authors:  Lei Huang; Jianfang Dong; Buqin Jing; Lianzhi Li; Daqi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

6.  Crystal structure and Hirshfeld surface analysis of (aqua-κO)(methanol-κO)[N-(2-oxido-benzyl-idene)threoninato-κ3 O,N,O']copper(II).

Authors:  Natsuki Katsuumi; Yuika Onami; Sayantan Pradhan; Tomoyuki Haraguchi; Takashiro Akitsu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-08-28
  6 in total

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