| Literature DB >> 21202263 |
Zhanglei Qiu1, Lianzhi Li, Yan Liu, Tao Xu, Daqi Wang.
Abstract
In the title complex, [Cu(C(15)H(13)NO(4))(C(10)H(8)N(2))], the Schiff base ligand is derived from the condensation of 2-hydr-oxy-1-naphthaldehyde and l-threonine. The Cu(II) atom is five-coordinated by one N atom and two O atoms from the Schiff base ligand and by two N atoms from a 2,2'-bipyridine ligand in a distorted square-pyramidal geometry. In the crystal structure, the combination of inter-molecular O-H⋯O and C-H⋯O hydrogen bonds leads to a two-dimensional network.Entities:
Year: 2008 PMID: 21202263 PMCID: PMC2961289 DOI: 10.1107/S1600536808012191
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C15H13NO4)(C10H8N2)] | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 5604 reflections |
| θ = 2.3–26.1º | |
| µ = 1.01 mm−1 | |
| Block, blue | |
| 0.29 × 0.28 × 0.16 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 5278 independent reflections |
| Radiation source: fine-focus sealed tube | 4243 reflections with |
| Monochromator: graphite | |
| θmax = 28.3º | |
| φ and ω scans | θmin = 2.0º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 14242 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.32 e Å−3 | |
| 5278 reflections | Δρmin = −0.54 e Å−3 |
| 300 parameters | Extinction correction: none |
| 492 restraints | Absolute structure: Flack (1983), 2229 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.005 (13) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cu1 | 0.32501 (3) | 1.00767 (2) | 0.977106 (17) | 0.03806 (10) | |
| N1 | 0.1622 (2) | 1.08781 (15) | 0.95744 (11) | 0.0313 (4) | |
| N2 | 0.2672 (3) | 0.89079 (19) | 1.06492 (15) | 0.0491 (6) | |
| N3 | 0.5005 (2) | 0.93672 (19) | 1.00252 (14) | 0.0480 (6) | |
| O4 | 0.3191 (2) | 0.93362 (17) | 0.88490 (11) | 0.0498 (5) | |
| O2 | 0.29386 (19) | 1.31490 (16) | 1.05070 (12) | 0.0512 (5) | |
| O1 | 0.37076 (18) | 1.14608 (15) | 1.03256 (11) | 0.0424 (4) | |
| O3 | −0.05190 (19) | 1.07490 (16) | 1.05400 (12) | 0.0474 (5) | |
| H3 | −0.0961 | 1.1082 | 1.0236 | 0.071* | |
| C1 | 0.2783 (3) | 1.2178 (2) | 1.03223 (14) | 0.0371 (6) | |
| C2 | 0.1394 (3) | 1.17825 (19) | 1.00763 (13) | 0.0319 (5) | |
| H28 | 0.0912 | 1.2379 | 0.9832 | 0.038* | |
| C3 | 0.0596 (3) | 1.1395 (2) | 1.07501 (15) | 0.0368 (6) | |
| H29 | 0.1194 | 1.0925 | 1.1037 | 0.044* | |
| C4 | 0.0177 (3) | 1.2351 (3) | 1.12313 (16) | 0.0510 (7) | |
| H21A | −0.0285 | 1.2076 | 1.1651 | 0.077* | |
| H21B | −0.0409 | 1.2830 | 1.0965 | 0.077* | |
| H21C | 0.0960 | 1.2750 | 1.1382 | 0.077* | |
| C5 | 0.0856 (2) | 1.0765 (2) | 0.90139 (14) | 0.0325 (5) | |
| H11 | 0.0125 | 1.1237 | 0.8978 | 0.039* | |
| C6 | 0.1028 (2) | 0.9982 (2) | 0.84450 (12) | 0.0363 (5) | |
| C7 | 0.2228 (3) | 0.9366 (2) | 0.83774 (15) | 0.0415 (6) | |
| C8 | 0.2402 (3) | 0.8722 (3) | 0.77391 (16) | 0.0545 (8) | |
| H18 | 0.3199 | 0.8335 | 0.7678 | 0.065* | |
| C9 | 0.1453 (4) | 0.8654 (3) | 0.72205 (16) | 0.0560 (8) | |
| H19 | 0.1615 | 0.8224 | 0.6813 | 0.067* | |
| C10 | 0.0215 (3) | 0.9221 (2) | 0.72803 (15) | 0.0452 (6) | |
| C11 | −0.0016 (3) | 0.9893 (2) | 0.78988 (13) | 0.0397 (6) | |
| C12 | −0.1269 (3) | 1.0408 (2) | 0.79527 (17) | 0.0495 (7) | |
| H27 | −0.1453 | 1.0845 | 0.8354 | 0.059* | |
| C13 | −0.2234 (4) | 1.0284 (3) | 0.74247 (19) | 0.0588 (8) | |
| H26 | −0.3055 | 1.0640 | 0.7475 | 0.071* | |
| C14 | −0.2000 (4) | 0.9635 (3) | 0.68174 (18) | 0.0621 (9) | |
| H25 | −0.2659 | 0.9556 | 0.6464 | 0.074* | |
| C15 | −0.0795 (4) | 0.9115 (3) | 0.67446 (17) | 0.0572 (8) | |
| H15 | −0.0634 | 0.8685 | 0.6337 | 0.069* | |
| C16 | 0.1466 (4) | 0.8711 (3) | 1.0941 (2) | 0.0660 (9) | |
| H17 | 0.0701 | 0.8976 | 1.0710 | 0.079* | |
| C17 | 0.1333 (6) | 0.8119 (3) | 1.1577 (3) | 0.0965 (13) | |
| H22 | 0.0488 | 0.7999 | 1.1777 | 0.116* | |
| C18 | 0.2463 (6) | 0.7710 (4) | 1.1912 (3) | 0.1063 (14) | |
| H36 | 0.2387 | 0.7302 | 1.2336 | 0.128* | |
| C19 | 0.3693 (5) | 0.7909 (3) | 1.1617 (3) | 0.0883 (12) | |
| H37 | 0.4468 | 0.7665 | 1.1849 | 0.106* | |
| C20 | 0.3776 (4) | 0.8483 (2) | 1.09632 (19) | 0.0579 (8) | |
| C21 | 0.5052 (3) | 0.8664 (2) | 1.05811 (19) | 0.0524 (7) | |
| C22 | 0.6242 (4) | 0.8126 (3) | 1.0751 (2) | 0.0701 (10) | |
| H33 | 0.6271 | 0.7624 | 1.1131 | 0.084* | |
| C23 | 0.7371 (4) | 0.8343 (3) | 1.0354 (3) | 0.0775 (11) | |
| H23 | 0.8169 | 0.7986 | 1.0468 | 0.093* | |
| C24 | 0.7348 (3) | 0.9067 (3) | 0.9799 (3) | 0.0719 (10) | |
| H24 | 0.8118 | 0.9222 | 0.9532 | 0.086* | |
| C25 | 0.6136 (3) | 0.9570 (3) | 0.9642 (2) | 0.0634 (9) | |
| H32 | 0.6097 | 1.0066 | 0.9259 | 0.076* |
| Cu1 | 0.03383 (16) | 0.04027 (16) | 0.04008 (17) | 0.00393 (14) | −0.00421 (14) | 0.00230 (15) |
| N1 | 0.0301 (10) | 0.0347 (10) | 0.0291 (11) | 0.0002 (9) | 0.0011 (9) | −0.0009 (8) |
| N2 | 0.0536 (15) | 0.0405 (13) | 0.0531 (16) | −0.0017 (11) | −0.0030 (13) | 0.0083 (12) |
| N3 | 0.0409 (13) | 0.0384 (13) | 0.0647 (17) | 0.0035 (10) | −0.0093 (12) | 0.0003 (11) |
| O4 | 0.0456 (11) | 0.0590 (12) | 0.0448 (12) | 0.0165 (10) | −0.0016 (11) | −0.0084 (9) |
| O2 | 0.0434 (11) | 0.0466 (11) | 0.0636 (14) | −0.0096 (9) | 0.0033 (10) | −0.0158 (10) |
| O1 | 0.0341 (9) | 0.0460 (10) | 0.0470 (12) | −0.0025 (8) | −0.0092 (9) | −0.0015 (9) |
| O3 | 0.0356 (10) | 0.0553 (12) | 0.0514 (13) | −0.0103 (9) | 0.0020 (9) | 0.0047 (10) |
| C1 | 0.0398 (13) | 0.0424 (13) | 0.0291 (13) | −0.0075 (11) | 0.0053 (11) | −0.0008 (11) |
| C2 | 0.0348 (12) | 0.0333 (12) | 0.0275 (12) | 0.0016 (10) | −0.0021 (10) | −0.0008 (9) |
| C3 | 0.0339 (13) | 0.0442 (14) | 0.0323 (13) | −0.0029 (11) | 0.0013 (11) | 0.0017 (11) |
| C4 | 0.0536 (18) | 0.0621 (19) | 0.0374 (15) | 0.0016 (15) | 0.0060 (14) | −0.0050 (14) |
| C5 | 0.0326 (12) | 0.0360 (12) | 0.0288 (12) | 0.0016 (10) | −0.0001 (10) | 0.0002 (10) |
| C6 | 0.0456 (13) | 0.0364 (12) | 0.0270 (11) | 0.0003 (13) | 0.0012 (10) | −0.0009 (11) |
| C7 | 0.0486 (15) | 0.0413 (14) | 0.0346 (14) | 0.0009 (12) | 0.0065 (12) | −0.0036 (11) |
| C8 | 0.0637 (19) | 0.0570 (17) | 0.0428 (17) | 0.0105 (15) | 0.0104 (15) | −0.0090 (14) |
| C9 | 0.074 (2) | 0.0580 (16) | 0.0354 (15) | −0.0053 (16) | 0.0078 (15) | −0.0131 (13) |
| C10 | 0.0586 (16) | 0.0469 (15) | 0.0299 (13) | −0.0123 (13) | 0.0007 (13) | −0.0025 (11) |
| C11 | 0.0510 (14) | 0.0392 (13) | 0.0291 (11) | −0.0082 (13) | −0.0017 (11) | 0.0002 (11) |
| C12 | 0.0552 (16) | 0.0542 (15) | 0.0392 (15) | −0.0003 (13) | −0.0115 (13) | −0.0065 (12) |
| C13 | 0.0596 (17) | 0.065 (2) | 0.0515 (17) | −0.0031 (15) | −0.0187 (15) | −0.0011 (15) |
| C14 | 0.076 (2) | 0.0662 (18) | 0.0440 (16) | −0.0210 (16) | −0.0221 (16) | 0.0030 (14) |
| C15 | 0.079 (2) | 0.0582 (17) | 0.0344 (15) | −0.0206 (16) | −0.0067 (15) | −0.0039 (13) |
| C16 | 0.074 (2) | 0.0503 (17) | 0.074 (2) | −0.0007 (16) | 0.0131 (19) | 0.0167 (16) |
| C17 | 0.104 (3) | 0.085 (3) | 0.101 (3) | 0.002 (2) | 0.034 (3) | 0.038 (2) |
| C18 | 0.128 (3) | 0.098 (3) | 0.092 (3) | 0.009 (3) | 0.010 (3) | 0.049 (2) |
| C19 | 0.100 (3) | 0.080 (2) | 0.084 (2) | 0.015 (2) | −0.007 (2) | 0.035 (2) |
| C20 | 0.0753 (19) | 0.0387 (14) | 0.0597 (18) | 0.0037 (15) | −0.0113 (17) | 0.0086 (14) |
| C21 | 0.0575 (17) | 0.0352 (14) | 0.0645 (18) | 0.0071 (13) | −0.0215 (15) | −0.0033 (14) |
| C22 | 0.076 (2) | 0.0502 (17) | 0.084 (2) | 0.0146 (17) | −0.029 (2) | −0.0012 (17) |
| C23 | 0.060 (2) | 0.063 (2) | 0.109 (3) | 0.0182 (17) | −0.031 (2) | −0.020 (2) |
| C24 | 0.0489 (17) | 0.0566 (18) | 0.110 (3) | 0.0058 (15) | −0.010 (2) | −0.015 (2) |
| C25 | 0.0492 (17) | 0.0481 (16) | 0.093 (2) | 0.0030 (13) | −0.0050 (18) | −0.0026 (16) |
| Cu1—O4 | 1.925 (2) | C8—H18 | 0.9300 |
| Cu1—N1 | 1.926 (2) | C9—C10 | 1.417 (5) |
| Cu1—N3 | 2.005 (2) | C9—H19 | 0.9300 |
| Cu1—O1 | 2.0236 (18) | C10—C15 | 1.415 (4) |
| Cu1—N2 | 2.231 (3) | C10—C11 | 1.422 (4) |
| N1—C5 | 1.292 (3) | C11—C12 | 1.400 (4) |
| N1—C2 | 1.457 (3) | C12—C13 | 1.376 (4) |
| N2—C16 | 1.338 (4) | C12—H27 | 0.9300 |
| N2—C20 | 1.345 (4) | C13—C14 | 1.390 (5) |
| N3—C21 | 1.337 (4) | C13—H26 | 0.9300 |
| N3—C25 | 1.352 (4) | C14—C15 | 1.363 (5) |
| O4—C7 | 1.295 (4) | C14—H25 | 0.9300 |
| O2—C1 | 1.240 (3) | C15—H15 | 0.9300 |
| O1—C1 | 1.269 (3) | C16—C17 | 1.384 (5) |
| O3—C3 | 1.415 (3) | C16—H17 | 0.9300 |
| O3—H3 | 0.8200 | C17—C18 | 1.376 (7) |
| C1—C2 | 1.533 (4) | C17—H22 | 0.9300 |
| C2—C3 | 1.548 (4) | C18—C19 | 1.362 (7) |
| C2—H28 | 0.9800 | C18—H36 | 0.9300 |
| C3—C4 | 1.522 (4) | C19—C20 | 1.397 (5) |
| C3—H29 | 0.9800 | C19—H37 | 0.9300 |
| C4—H21A | 0.9600 | C20—C21 | 1.469 (5) |
| C4—H21B | 0.9600 | C21—C22 | 1.390 (5) |
| C4—H21C | 0.9600 | C22—C23 | 1.366 (6) |
| C5—C6 | 1.428 (3) | C22—H33 | 0.9300 |
| C5—H11 | 0.9300 | C23—C24 | 1.352 (6) |
| C6—C7 | 1.417 (4) | C23—H23 | 0.9300 |
| C6—C11 | 1.452 (3) | C24—C25 | 1.384 (5) |
| C7—C8 | 1.425 (4) | C24—H24 | 0.9300 |
| C8—C9 | 1.346 (5) | C25—H32 | 0.9300 |
| O4—Cu1—N1 | 92.62 (8) | C9—C8—H18 | 118.8 |
| O4—Cu1—N3 | 91.77 (9) | C7—C8—H18 | 118.8 |
| N1—Cu1—N3 | 174.65 (9) | C8—C9—C10 | 121.6 (3) |
| O4—Cu1—O1 | 147.49 (9) | C8—C9—H19 | 119.2 |
| N1—Cu1—O1 | 82.08 (8) | C10—C9—H19 | 119.2 |
| N3—Cu1—O1 | 92.57 (9) | C15—C10—C9 | 121.3 (3) |
| O4—Cu1—N2 | 109.51 (10) | C15—C10—C11 | 119.8 (3) |
| N1—Cu1—N2 | 104.07 (9) | C9—C10—C11 | 118.9 (3) |
| N3—Cu1—N2 | 77.29 (10) | C12—C11—C10 | 117.3 (3) |
| O1—Cu1—N2 | 102.88 (9) | C12—C11—C6 | 123.7 (2) |
| C5—N1—C2 | 119.8 (2) | C10—C11—C6 | 118.9 (3) |
| C5—N1—Cu1 | 126.40 (17) | C13—C12—C11 | 121.5 (3) |
| C2—N1—Cu1 | 113.27 (15) | C13—C12—H27 | 119.3 |
| C16—N2—C20 | 119.4 (3) | C11—C12—H27 | 119.3 |
| C16—N2—Cu1 | 129.6 (2) | C12—C13—C14 | 121.0 (3) |
| C20—N2—Cu1 | 110.3 (2) | C12—C13—H26 | 119.5 |
| C21—N3—C25 | 119.3 (3) | C14—C13—H26 | 119.5 |
| C21—N3—Cu1 | 119.1 (2) | C15—C14—C13 | 119.4 (3) |
| C25—N3—Cu1 | 121.6 (2) | C15—C14—H25 | 120.3 |
| C7—O4—Cu1 | 127.02 (18) | C13—C14—H25 | 120.3 |
| C1—O1—Cu1 | 114.08 (16) | C14—C15—C10 | 120.9 (3) |
| C3—O3—H3 | 109.5 | C14—C15—H15 | 119.5 |
| O2—C1—O1 | 124.4 (2) | C10—C15—H15 | 119.5 |
| O2—C1—C2 | 119.6 (2) | N2—C16—C17 | 121.3 (4) |
| O1—C1—C2 | 116.1 (2) | N2—C16—H17 | 119.3 |
| N1—C2—C1 | 106.54 (19) | C17—C16—H17 | 119.3 |
| N1—C2—C3 | 111.06 (19) | C18—C17—C16 | 119.4 (5) |
| C1—C2—C3 | 108.7 (2) | C18—C17—H22 | 120.3 |
| N1—C2—H28 | 110.1 | C16—C17—H22 | 120.3 |
| C1—C2—H28 | 110.1 | C19—C18—C17 | 119.5 (4) |
| C3—C2—H28 | 110.1 | C19—C18—H36 | 120.3 |
| O3—C3—C4 | 111.7 (2) | C17—C18—H36 | 120.3 |
| O3—C3—C2 | 110.6 (2) | C18—C19—C20 | 119.1 (4) |
| C4—C3—C2 | 112.0 (2) | C18—C19—H37 | 120.4 |
| O3—C3—H29 | 107.4 | C20—C19—H37 | 120.4 |
| C4—C3—H29 | 107.4 | N2—C20—C19 | 121.1 (4) |
| C2—C3—H29 | 107.4 | N2—C20—C21 | 116.2 (3) |
| C3—C4—H21A | 109.5 | C19—C20—C21 | 122.7 (4) |
| C3—C4—H21B | 109.5 | N3—C21—C22 | 120.3 (4) |
| H21A—C4—H21B | 109.5 | N3—C21—C20 | 115.7 (3) |
| C3—C4—H21C | 109.5 | C22—C21—C20 | 123.9 (3) |
| H21A—C4—H21C | 109.5 | C23—C22—C21 | 119.3 (4) |
| H21B—C4—H21C | 109.5 | C23—C22—H33 | 120.4 |
| N1—C5—C6 | 126.0 (2) | C21—C22—H33 | 120.4 |
| N1—C5—H11 | 117.0 | C24—C23—C22 | 121.2 (3) |
| C6—C5—H11 | 117.0 | C24—C23—H23 | 119.4 |
| C7—C6—C5 | 121.3 (2) | C22—C23—H23 | 119.4 |
| C7—C6—C11 | 120.2 (2) | C23—C24—C25 | 117.5 (4) |
| C5—C6—C11 | 118.3 (2) | C23—C24—H24 | 121.3 |
| O4—C7—C6 | 125.5 (2) | C25—C24—H24 | 121.3 |
| O4—C7—C8 | 116.7 (3) | N3—C25—C24 | 122.4 (4) |
| C6—C7—C8 | 117.8 (3) | N3—C25—H32 | 118.8 |
| C9—C8—C7 | 122.4 (3) | C24—C25—H32 | 118.8 |
| C1—C2—C3—C4 | 71.0 (3) |
| H··· | ||||
| O3—H3···O2i | 0.82 | 1.99 | 2.808 (3) | 178 |
| C5—H11···O2i | 0.93 | 2.49 | 3.311 (3) | 147 |
| C12—H27···O2i | 0.93 | 2.50 | 3.431 (4) | 174 |
| C14—H25···O3ii | 0.93 | 2.52 | 3.445 (4) | 177 |
| Cu1—O4 | 1.925 (2) |
| Cu1—N1 | 1.926 (2) |
| Cu1—N3 | 2.005 (2) |
| Cu1—O1 | 2.0236 (18) |
| Cu1—N2 | 2.231 (3) |
| O4—Cu1—N1 | 92.62 (8) |
| O4—Cu1—N3 | 91.77 (9) |
| N1—Cu1—N3 | 174.65 (9) |
| O4—Cu1—O1 | 147.49 (9) |
| N1—Cu1—O1 | 82.08 (8) |
| N3—Cu1—O1 | 92.57 (9) |
| O4—Cu1—N2 | 109.51 (10) |
| N1—Cu1—N2 | 104.07 (9) |
| N3—Cu1—N2 | 77.29 (10) |
| O1—Cu1—N2 | 102.88 (9) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2i | 0.82 | 1.99 | 2.808 (3) | 178 |
| C5—H11⋯O2i | 0.93 | 2.49 | 3.311 (3) | 147 |
| C12—H27⋯O2i | 0.93 | 2.50 | 3.431 (4) | 174 |
| C14—H25⋯O3ii | 0.93 | 2.52 | 3.445 (4) | 177 |
Symmetry codes: (i) ; (ii) .