Literature DB >> 21579013

{N-[(2-Oxido-1-naphth-yl)methyl-idene]-serinato-κO,N,O'}(1,10-phenanthroline-κN,N')copper(II).

Jinghong Li1, Zhenghua Guo, Lianzhi Li, Daqi Wang.   

Abstract

In the title complex, [Cu(C(14)H(11)NO(4))(C(12)H(8)N(2))], the tridentate Schiff base ligand is derived from the condensation of 2-hydr-oxy-1-naphthaldehyde and l-serine. The Cu(II) atom is five-coordinated by one N atom and two O atoms from the Schiff base ligand and by two N atoms from a 1,10-phenanthroline ligand in a distorted square-pyramidal geometry. In the crystal structure, the combination of inter-molecular O-H⋯O and C-H⋯O hydrogen bonds results in a two-dimensional network structure parallel to (001).

Entities:  

Year:  2010        PMID: 21579013      PMCID: PMC2979222          DOI: 10.1107/S1600536810012675

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to Schiff base complexes, see: Garnovski et al. (1993 ▶); Kalagouda et al. (2006 ▶); Wang et al. (1999 ▶). For our previous work on amino Schiff base complexes, see: Qiu et al. (2008 ▶); Wang et al. (2007 ▶).

Experimental

Crystal data

[Cu(C14H11NO4)(C12H8N2)] M = 500.98 Monoclinic, a = 10.7302 (12) Å b = 6.4687 (6) Å c = 15.7930 (17) Å β = 91.924 (1)° V = 1095.6 (2) Å3 Z = 2 Mo Kα radiation μ = 1.04 mm−1 T = 298 K 0.43 × 0.16 × 0.08 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.664, T max = 0.922 5555 measured reflections 3633 independent reflections 3022 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.094 S = 0.97 3633 reflections 307 parameters 1 restraint H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), with 1529 Friedel pairs Flack parameter: −0.023 (17) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810012675/hy2297sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810012675/hy2297Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C14H11NO4)(C12H8N2)]F(000) = 514
Mr = 500.98Dx = 1.519 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 746 reflections
a = 10.7302 (12) Åθ = 3.3–25.2°
b = 6.4687 (6) ŵ = 1.04 mm1
c = 15.7930 (17) ÅT = 298 K
β = 91.924 (1)°Needle, green
V = 1095.6 (2) Å30.43 × 0.16 × 0.08 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer3633 independent reflections
Radiation source: fine-focus sealed tube3022 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→11
Tmin = 0.664, Tmax = 0.922k = −7→7
5555 measured reflectionsl = −18→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0491P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
3633 reflectionsΔρmax = 0.41 e Å3
307 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), with 1529 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.023 (17)
xyzUiso*/Ueq
Cu10.85224 (4)0.14981 (9)0.75536 (3)0.04385 (16)
N10.6939 (3)0.2834 (6)0.7406 (2)0.0385 (8)
N21.0094 (3)−0.0200 (6)0.7612 (2)0.0472 (9)
N30.9778 (3)0.3251 (6)0.6648 (2)0.0455 (9)
O10.7806 (3)−0.0536 (5)0.6722 (2)0.0536 (8)
O20.6057 (4)−0.1294 (5)0.5986 (2)0.0629 (10)
O30.5115 (3)0.4941 (6)0.6180 (2)0.0682 (10)
H30.54630.60510.61030.102*
O40.8869 (3)0.2791 (5)0.86299 (18)0.0534 (8)
C10.6697 (4)−0.0168 (7)0.6467 (3)0.0455 (11)
C20.6124 (3)0.1876 (7)0.6743 (2)0.0394 (11)
H20.53110.15890.69830.047*
C30.5927 (5)0.3310 (8)0.5981 (3)0.0497 (12)
H3A0.67230.38710.58200.060*
H3B0.55780.25320.55050.060*
C40.6521 (4)0.4288 (7)0.7864 (3)0.0406 (10)
H40.57150.47510.77380.049*
C50.7188 (4)0.5272 (7)0.8559 (3)0.0412 (10)
C60.8261 (4)0.4355 (8)0.8927 (3)0.0463 (11)
C70.8738 (4)0.5219 (9)0.9718 (3)0.0568 (13)
H70.94100.45770.99970.068*
C80.8240 (4)0.6931 (9)1.0064 (3)0.0602 (15)
H80.85780.74311.05740.072*
C90.7211 (4)0.7988 (8)0.9669 (3)0.0524 (12)
C100.6680 (4)0.7142 (6)0.8910 (3)0.0434 (12)
C110.5671 (4)0.8226 (8)0.8529 (3)0.0534 (12)
H110.53000.77110.80320.064*
C120.5216 (5)1.0034 (8)0.8871 (3)0.0596 (13)
H120.45401.07020.86070.071*
C130.5764 (5)1.0859 (8)0.9608 (3)0.0642 (15)
H130.54671.20850.98330.077*
C140.6735 (5)0.9856 (9)0.9992 (3)0.0636 (14)
H140.70991.04121.04840.076*
C151.0230 (5)−0.1874 (8)0.8073 (3)0.0621 (14)
H150.9624−0.21910.84600.075*
C161.1243 (5)−0.3193 (11)0.8008 (4)0.0776 (17)
H161.1298−0.43810.83390.093*
C171.2155 (5)−0.2738 (9)0.7458 (4)0.0780 (18)
H171.2840−0.36080.74150.094*
C181.2056 (4)−0.0959 (8)0.6958 (3)0.0564 (13)
C191.0996 (4)0.0292 (8)0.7055 (3)0.0481 (11)
C201.0833 (4)0.2127 (7)0.6554 (3)0.0429 (12)
C211.1751 (4)0.2679 (9)0.5972 (3)0.0548 (12)
C221.1553 (5)0.4525 (10)0.5521 (3)0.0694 (16)
H221.21400.49700.51410.083*
C231.0512 (5)0.5663 (8)0.5637 (3)0.0671 (15)
H231.03830.68910.53400.080*
C240.9638 (4)0.4976 (8)0.6204 (3)0.0552 (12)
H240.89240.57640.62740.066*
C251.2954 (4)−0.0334 (11)0.6350 (4)0.0730 (17)
H251.3658−0.11470.62820.088*
C261.2811 (4)0.1357 (14)0.5886 (3)0.0708 (15)
H261.34090.16940.54960.085*
U11U22U33U12U13U23
Cu10.0443 (3)0.0443 (3)0.0434 (3)0.0024 (3)0.00652 (18)−0.0022 (3)
N10.0436 (18)0.036 (2)0.0364 (18)−0.0015 (16)0.0031 (15)−0.0063 (16)
N20.050 (2)0.046 (2)0.046 (2)−0.0002 (18)−0.0006 (17)0.0024 (19)
N30.052 (2)0.042 (2)0.043 (2)−0.0019 (19)0.0020 (16)0.0027 (18)
O10.0538 (19)0.048 (2)0.059 (2)0.0080 (16)0.0002 (16)−0.0130 (17)
O20.075 (2)0.048 (2)0.066 (2)−0.002 (2)−0.0035 (19)−0.0200 (19)
O30.068 (2)0.047 (2)0.089 (3)0.0030 (19)−0.0033 (19)0.002 (2)
O40.0529 (17)0.063 (2)0.0442 (17)0.0077 (17)−0.0007 (14)−0.0051 (16)
C10.054 (3)0.040 (3)0.043 (2)−0.006 (2)0.008 (2)−0.006 (2)
C20.0393 (19)0.040 (3)0.039 (2)−0.005 (2)0.0038 (16)−0.011 (2)
C30.058 (3)0.046 (3)0.045 (3)−0.006 (3)0.000 (2)0.002 (2)
C40.039 (2)0.041 (3)0.042 (2)−0.002 (2)0.0012 (18)−0.002 (2)
C50.046 (2)0.042 (3)0.036 (2)−0.006 (2)0.0052 (19)−0.004 (2)
C60.047 (2)0.053 (3)0.039 (2)−0.007 (2)0.0077 (19)−0.004 (2)
C70.051 (3)0.072 (4)0.047 (3)−0.001 (3)−0.003 (2)−0.006 (3)
C80.066 (3)0.069 (5)0.045 (2)−0.011 (3)−0.002 (2)−0.022 (3)
C90.057 (3)0.050 (3)0.051 (3)−0.010 (2)0.012 (2)−0.014 (2)
C100.054 (2)0.042 (3)0.036 (2)−0.007 (2)0.0115 (19)−0.0030 (18)
C110.064 (3)0.052 (3)0.045 (3)−0.004 (3)0.011 (2)−0.003 (2)
C120.073 (3)0.048 (3)0.058 (3)0.004 (3)0.018 (3)−0.003 (3)
C130.085 (4)0.047 (4)0.061 (3)−0.002 (3)0.024 (3)−0.013 (2)
C140.075 (3)0.058 (4)0.058 (3)−0.013 (3)0.010 (3)−0.024 (3)
C150.072 (3)0.054 (3)0.060 (3)−0.003 (3)−0.012 (3)0.011 (3)
C160.087 (3)0.054 (4)0.090 (4)0.010 (4)−0.035 (3)0.014 (4)
C170.057 (3)0.068 (4)0.106 (5)0.015 (3)−0.031 (3)−0.014 (3)
C180.041 (3)0.055 (3)0.071 (3)0.006 (2)−0.012 (2)−0.017 (3)
C190.039 (2)0.052 (3)0.053 (3)−0.001 (2)−0.005 (2)−0.014 (2)
C200.037 (2)0.049 (3)0.043 (2)−0.0048 (19)0.0044 (18)−0.006 (2)
C210.048 (3)0.065 (3)0.052 (3)−0.014 (3)0.008 (2)−0.010 (3)
C220.076 (4)0.080 (4)0.053 (3)−0.033 (3)0.008 (3)0.000 (3)
C230.087 (4)0.057 (4)0.057 (3)−0.019 (3)−0.008 (3)0.013 (2)
C240.060 (3)0.047 (3)0.058 (3)−0.004 (2)−0.010 (2)0.004 (2)
C250.041 (3)0.082 (5)0.097 (5)0.003 (3)0.009 (3)−0.035 (4)
C260.049 (3)0.092 (4)0.072 (3)−0.013 (4)0.018 (2)−0.027 (5)
Cu1—N11.914 (3)C9—C141.415 (7)
Cu1—N22.012 (4)C9—C101.419 (6)
Cu1—N32.297 (4)C10—C111.407 (6)
Cu1—O11.994 (3)C11—C121.385 (7)
Cu1—O41.920 (3)C11—H110.9300
N1—C41.278 (5)C12—C131.393 (7)
N1—C21.477 (5)C12—H120.9300
N2—C151.310 (6)C13—C141.353 (7)
N2—C191.367 (6)C13—H130.9300
N3—C241.324 (6)C14—H140.9300
N3—C201.358 (5)C15—C161.388 (7)
O1—C11.267 (5)C15—H150.9300
O2—C11.242 (5)C16—C171.363 (8)
O3—C31.411 (6)C16—H160.9300
O3—H30.8200C17—C181.398 (8)
O4—C61.300 (5)C17—H170.9300
C1—C21.527 (6)C18—C191.408 (6)
C2—C31.528 (6)C18—C251.441 (8)
C2—H20.9800C19—C201.434 (6)
C3—H3A0.9700C20—C211.415 (6)
C3—H3B0.9700C21—C221.403 (8)
C4—C51.438 (6)C21—C261.433 (8)
C4—H40.9300C22—C231.356 (8)
C5—C61.404 (6)C22—H220.9300
C5—C101.445 (6)C23—C241.391 (7)
C6—C71.447 (6)C23—H230.9300
C7—C81.353 (7)C24—H240.9300
C7—H70.9300C25—C261.323 (9)
C8—C91.424 (7)C25—H250.9300
C8—H80.9300C26—H260.9300
N1—Cu1—O493.23 (13)C14—C9—C8122.4 (5)
N1—Cu1—O184.06 (14)C10—C9—C8117.9 (4)
O4—Cu1—O1158.33 (14)C11—C10—C9116.8 (4)
N1—Cu1—N2172.54 (16)C11—C10—C5123.2 (4)
O4—Cu1—N293.43 (14)C9—C10—C5120.0 (4)
O1—Cu1—N288.51 (14)C12—C11—C10122.0 (4)
N1—Cu1—N3103.78 (14)C12—C11—H11119.0
O4—Cu1—N3103.66 (14)C10—C11—H11119.0
O1—Cu1—N397.86 (13)C11—C12—C13120.3 (5)
N2—Cu1—N377.87 (14)C11—C12—H12119.8
C4—N1—C2120.0 (3)C13—C12—H12119.8
C4—N1—Cu1126.2 (3)C14—C13—C12119.2 (5)
C2—N1—Cu1113.5 (3)C14—C13—H13120.4
C15—N2—C19118.8 (4)C12—C13—H13120.4
C15—N2—Cu1123.7 (3)C13—C14—C9122.0 (5)
C19—N2—Cu1117.0 (3)C13—C14—H14119.0
C24—N3—C20118.2 (4)C9—C14—H14119.0
C24—N3—Cu1133.4 (3)N2—C15—C16122.7 (5)
C20—N3—Cu1108.2 (3)N2—C15—H15118.7
C1—O1—Cu1115.0 (3)C16—C15—H15118.7
C3—O3—H3109.5C17—C16—C15119.7 (6)
C6—O4—Cu1125.0 (3)C17—C16—H16120.2
O2—C1—O1125.3 (4)C15—C16—H16120.2
O2—C1—C2117.5 (4)C16—C17—C18119.7 (5)
O1—C1—C2117.1 (4)C16—C17—H17120.2
N1—C2—C1109.3 (3)C18—C17—H17120.2
N1—C2—C3111.4 (4)C17—C18—C19117.3 (5)
C1—C2—C3110.3 (3)C17—C18—C25124.6 (5)
N1—C2—H2108.6C19—C18—C25118.1 (5)
C1—C2—H2108.6N2—C19—C18121.8 (5)
C3—C2—H2108.6N2—C19—C20118.2 (4)
O3—C3—C2110.4 (4)C18—C19—C20120.0 (4)
O3—C3—H3A109.6N3—C20—C21122.5 (4)
C2—C3—H3A109.6N3—C20—C19118.0 (4)
O3—C3—H3B109.6C21—C20—C19119.5 (4)
C2—C3—H3B109.6C22—C21—C20116.6 (5)
H3A—C3—H3B108.1C22—C21—C26124.5 (5)
N1—C4—C5125.7 (4)C20—C21—C26118.9 (5)
N1—C4—H4117.2C23—C22—C21120.3 (5)
C5—C4—H4117.2C23—C22—H22119.8
C6—C5—C4120.6 (4)C21—C22—H22119.8
C6—C5—C10120.6 (4)C22—C23—C24119.3 (5)
C4—C5—C10118.6 (4)C22—C23—H23120.3
O4—C6—C5126.5 (4)C24—C23—H23120.3
O4—C6—C7116.4 (4)N3—C24—C23122.9 (5)
C5—C6—C7117.1 (4)N3—C24—H24118.5
C8—C7—C6122.1 (5)C23—C24—H24118.5
C8—C7—H7118.9C26—C25—C18122.3 (5)
C6—C7—H7118.9C26—C25—H25118.9
C7—C8—C9121.8 (4)C18—C25—H25118.9
C7—C8—H8119.1C25—C26—C21121.2 (5)
C9—C8—H8119.1C25—C26—H26119.4
C14—C9—C10119.6 (5)C21—C26—H26119.4
O4—Cu1—N1—C49.5 (4)C7—C8—C9—C102.6 (7)
O1—Cu1—N1—C4168.0 (4)C14—C9—C10—C11−1.2 (6)
N3—Cu1—N1—C4−95.4 (4)C8—C9—C10—C11−179.5 (4)
O4—Cu1—N1—C2−164.0 (3)C14—C9—C10—C5177.9 (4)
O1—Cu1—N1—C2−5.6 (3)C8—C9—C10—C5−0.4 (6)
N3—Cu1—N1—C291.1 (3)C6—C5—C10—C11174.5 (4)
O4—Cu1—N2—C1577.5 (4)C4—C5—C10—C11−10.0 (6)
O1—Cu1—N2—C15−80.9 (4)C6—C5—C10—C9−4.5 (6)
N3—Cu1—N2—C15−179.3 (4)C4—C5—C10—C9170.9 (4)
O4—Cu1—N2—C19−111.2 (3)C9—C10—C11—C120.2 (6)
O1—Cu1—N2—C1990.4 (3)C5—C10—C11—C12−178.9 (4)
N3—Cu1—N2—C19−7.9 (3)C10—C11—C12—C130.9 (7)
N1—Cu1—N3—C2410.5 (4)C11—C12—C13—C14−1.0 (7)
O4—Cu1—N3—C24−86.3 (4)C12—C13—C14—C90.0 (7)
O1—Cu1—N3—C2496.3 (4)C10—C9—C14—C131.2 (7)
N2—Cu1—N3—C24−176.9 (4)C8—C9—C14—C13179.4 (5)
N1—Cu1—N3—C20−165.7 (3)C19—N2—C15—C16−1.2 (7)
O4—Cu1—N3—C2097.4 (3)Cu1—N2—C15—C16170.0 (4)
O1—Cu1—N3—C20−80.0 (3)N2—C15—C16—C171.2 (8)
N2—Cu1—N3—C206.8 (3)C15—C16—C17—C18−0.6 (8)
N1—Cu1—O1—C1−0.8 (3)C16—C17—C18—C190.1 (8)
O4—Cu1—O1—C183.0 (5)C16—C17—C18—C25−179.4 (5)
N2—Cu1—O1—C1178.6 (3)C15—N2—C19—C180.6 (7)
N3—Cu1—O1—C1−103.9 (3)Cu1—N2—C19—C18−171.2 (3)
N1—Cu1—O4—C6−13.8 (4)C15—N2—C19—C20179.9 (4)
O1—Cu1—O4—C6−95.8 (5)Cu1—N2—C19—C208.1 (5)
N2—Cu1—O4—C6169.6 (3)C17—C18—C19—N20.0 (7)
N3—Cu1—O4—C691.3 (3)C25—C18—C19—N2179.4 (4)
Cu1—O1—C1—O2−176.0 (4)C17—C18—C19—C20−179.3 (4)
Cu1—O1—C1—C26.9 (5)C25—C18—C19—C200.1 (6)
C4—N1—C2—C1−164.0 (4)C24—N3—C20—C21−3.1 (6)
Cu1—N1—C2—C110.0 (4)Cu1—N3—C20—C21173.8 (4)
C4—N1—C2—C373.8 (5)C24—N3—C20—C19178.2 (4)
Cu1—N1—C2—C3−112.2 (3)Cu1—N3—C20—C19−4.9 (4)
O2—C1—C2—N1171.6 (4)N2—C19—C20—N3−1.4 (6)
O1—C1—C2—N1−11.1 (5)C18—C19—C20—N3177.9 (4)
O2—C1—C2—C3−65.5 (5)N2—C19—C20—C21179.9 (4)
O1—C1—C2—C3111.8 (4)C18—C19—C20—C21−0.8 (6)
N1—C2—C3—O3−73.8 (4)N3—C20—C21—C223.2 (7)
C1—C2—C3—O3164.6 (4)C19—C20—C21—C22−178.1 (4)
C2—N1—C4—C5176.3 (4)N3—C20—C21—C26−177.3 (4)
Cu1—N1—C4—C53.1 (6)C19—C20—C21—C261.4 (7)
N1—C4—C5—C6−16.1 (7)C20—C21—C22—C23−1.4 (8)
N1—C4—C5—C10168.5 (4)C26—C21—C22—C23179.1 (5)
Cu1—O4—C6—C55.7 (6)C21—C22—C23—C24−0.4 (8)
Cu1—O4—C6—C7−174.7 (3)C20—N3—C24—C231.1 (7)
C4—C5—C6—O411.2 (7)Cu1—N3—C24—C23−174.8 (3)
C10—C5—C6—O4−173.4 (4)C22—C23—C24—N30.6 (8)
C4—C5—C6—C7−168.4 (4)C17—C18—C25—C26179.3 (5)
C10—C5—C6—C77.0 (6)C19—C18—C25—C26−0.1 (8)
O4—C6—C7—C8175.5 (4)C18—C25—C26—C210.7 (9)
C5—C6—C7—C8−4.8 (7)C22—C21—C26—C25178.1 (5)
C6—C7—C8—C90.0 (7)C20—C21—C26—C25−1.4 (8)
C7—C8—C9—C14−175.6 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.821.842.659 (5)172
C25—H25···O2ii0.932.633.454 (6)148
Table 1

Selected bond lengths (Å)

Cu1—N11.914 (3)
Cu1—N22.012 (4)
Cu1—N32.297 (4)
Cu1—O11.994 (3)
Cu1—O41.920 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.821.842.659 (5)172
C25—H25⋯O2ii0.932.633.454 (6)148

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,2'-Bipyridine-κN,N')[N-(2-oxido-1-naphthyl-idene)threoninato-κO,N,O]copper(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-30
  2 in total
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1.  {3-Methyl-2-[(1-oxido-2-naphth-yl)methyl-idene-amino-κO,N]butano-ato-κO}(1H-pyrazole-κN)nickel(II).

Authors:  Qin-Long Peng; Gan-Qing Zhao; Li-Hua Chen; Ling-Wei Xue
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

2.  Crystal structure and Hirshfeld surface analysis of (aqua-κO)(methanol-κO)[N-(2-oxido-benzyl-idene)threoninato-κ3 O,N,O']copper(II).

Authors:  Natsuki Katsuumi; Yuika Onami; Sayantan Pradhan; Tomoyuki Haraguchi; Takashiro Akitsu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-08-28
  2 in total

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