Literature DB >> 21753981

{2-(4-Hy-droxy-phen-yl)-2-[(3-meth-oxy-2-oxidobenzyl-idene)amino-κO,N]propanoato-κO}(1,10-phenanthroline-κN,N')copper(II) dihydrate.

Xuewei Pu, Lianzhi Li, Jianfang Dong, Buqin Jing.   

Abstract

In the title complex, [Cu(C(17)H(15)NO(5))(C(12)H(8)N(2))]·2H(2)O, the central Cu(II) ion is five-coordinate, bound to one N atom and two O atoms from the Schiff base ligand and by two N atoms from a 1,10-phenanthroline ligand in a distorted square-pyramidal configuration. In the crystal, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds form a two-dimensional network parallel to (001).

Entities:  

Year:  2011        PMID: 21753981      PMCID: PMC3099980          DOI: 10.1107/S1600536811009627

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases and the applications of Schiff basecopper complexes, see: Chohan et al. (1998 ▶); Nath et al. (2001 ▶); Raso et al. (1999 ▶); Yamada (1966 ▶). For the structure of a similar complex with a five-coordinate CuII ion, see: Qiu et al. (2008 ▶).

Experimental

Crystal data

[Cu(C17H15NO5)(C12H8N2)]·2H2O M = 593.08 Monoclinic, a = 11.755 (3) Å b = 20.653 (5) Å c = 13.202 (3) Å β = 96.935 (4)° V = 3181.6 (14) Å3 Z = 4 Mo Kα radiation μ = 0.73 mm−1 T = 298 K 0.48 × 0.42 × 0.38 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.720, T max = 0.769 8117 measured reflections 3778 independent reflections 2811 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.202 S = 1.04 3778 reflections 363 parameters 15 restraints H-atom parameters constrained Δρmax = 1.19 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 956 Friedel pairs Flack parameter: −0.02 (3) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009627/rn2083sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009627/rn2083Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C17H15NO5)(C12H8N2)]·2H2OF(000) = 1228
Mr = 593.08Dx = 1.238 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 2405 reflections
a = 11.755 (3) Åθ = 2.4–22.2°
b = 20.653 (5) ŵ = 0.73 mm1
c = 13.202 (3) ÅT = 298 K
β = 96.935 (4)°Block, blue
V = 3181.6 (14) Å30.48 × 0.42 × 0.38 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer3778 independent reflections
Radiation source: fine-focus sealed tube2811 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.720, Tmax = 0.769k = −10→24
8117 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.071H-atom parameters constrained
wR(F2) = 0.202w = 1/[σ2(Fo2) + (0.1348P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3778 reflectionsΔρmax = 1.19 e Å3
363 parametersΔρmin = −0.32 e Å3
15 restraintsAbsolute structure: Flack (1983), 957 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.47884 (7)0.39140 (5)0.30240 (6)0.0528 (3)
O10.3247 (4)0.3954 (4)0.2218 (4)0.0629 (13)
O20.1982 (6)0.4622 (4)0.1409 (6)0.086 (2)
O30.6863 (7)0.7563 (4)0.1644 (6)0.093 (2)
H30.68840.77380.10890.139*
O40.6105 (4)0.3954 (4)0.4054 (4)0.0615 (13)
O50.7833 (6)0.3774 (4)0.5400 (5)0.085 (2)
O60.0460 (5)0.3655 (3)0.1065 (5)0.091 (2)
H300.07850.35550.05450.110*
H310.06980.40390.11830.110*
O70.1122 (9)0.5336 (6)0.9760 (9)0.140 (4)
H330.15040.53891.03430.169*
H320.12760.49400.96710.169*
N10.4673 (6)0.4843 (5)0.2928 (5)0.048 (2)
N30.4572 (7)0.2951 (4)0.3234 (6)0.057 (2)
N20.5696 (6)0.3454 (4)0.1729 (5)0.064 (2)
C10.2914 (8)0.4502 (5)0.1928 (7)0.064 (2)
C20.3727 (7)0.5070 (4)0.2167 (6)0.0523 (19)
H20.33230.54300.24470.063*
C30.4188 (7)0.5280 (5)0.1168 (6)0.058 (2)
H3A0.46470.49320.09380.070*
H3B0.35440.53500.06470.070*
C40.4896 (7)0.5882 (4)0.1279 (5)0.0502 (18)
C50.4378 (8)0.6477 (5)0.1252 (8)0.072 (3)
H50.35830.65000.11520.086*
C60.5015 (8)0.7054 (5)0.1372 (7)0.070 (2)
H60.46480.74530.13530.084*
C70.6210 (9)0.7016 (5)0.1519 (6)0.067 (2)
C80.6746 (8)0.6425 (6)0.1572 (7)0.070 (3)
H80.75420.64050.16910.084*
C90.6109 (8)0.5849 (5)0.1449 (6)0.059 (2)
H90.64790.54510.14790.071*
C100.5227 (7)0.5261 (5)0.3509 (6)0.055 (2)
H100.50030.56920.34330.065*
C110.6173 (7)0.5113 (5)0.4271 (6)0.055 (2)
C120.6726 (9)0.5654 (5)0.4794 (7)0.075 (3)
H120.64700.60750.46540.090*
C130.7641 (9)0.5534 (7)0.5505 (8)0.089 (3)
H130.80080.58800.58570.107*
C140.8038 (10)0.4923 (6)0.5719 (7)0.079 (3)
H140.86800.48640.61940.095*
C150.7517 (8)0.4403 (6)0.5254 (6)0.061 (2)
C160.6550 (7)0.4463 (5)0.4466 (6)0.056 (2)
C170.8766 (10)0.3668 (7)0.6178 (10)0.106 (4)
H17A0.94760.37270.58990.158*
H17B0.87280.32350.64350.158*
H17C0.87220.39710.67230.158*
C180.4013 (8)0.2711 (5)0.3963 (7)0.068 (2)
H180.37180.29980.44080.081*
C190.3855 (10)0.2077 (6)0.4090 (9)0.084 (3)
H190.34610.19330.46170.101*
C200.4272 (10)0.1631 (6)0.3443 (10)0.085 (3)
H200.41540.11890.35150.101*
C210.4880 (8)0.1874 (5)0.2676 (8)0.067 (2)
C220.5018 (7)0.2544 (5)0.2576 (7)0.059 (2)
C230.5601 (7)0.2798 (5)0.1781 (6)0.054 (2)
C240.6054 (9)0.2391 (6)0.1102 (8)0.073 (3)
C250.6605 (8)0.2653 (7)0.0366 (8)0.088 (3)
H250.69180.2384−0.00930.106*
C260.6710 (10)0.3290 (8)0.0287 (9)0.092 (3)
H260.70810.3465−0.02330.110*
C270.6258 (8)0.3701 (6)0.0993 (7)0.080 (3)
H270.63500.41470.09480.096*
C280.5357 (9)0.1457 (6)0.1986 (10)0.085 (3)
H280.52910.10100.20370.103*
C290.5923 (12)0.1733 (7)0.1232 (10)0.092 (4)
H290.62360.14570.07830.110*
U11U22U33U12U13U23
Cu10.0548 (5)0.0557 (6)0.0464 (5)−0.0062 (6)−0.0006 (3)0.0017 (5)
O10.062 (3)0.053 (3)0.070 (3)−0.016 (4)−0.005 (2)0.000 (4)
O20.070 (4)0.092 (5)0.089 (5)−0.018 (4)−0.025 (4)0.032 (4)
O30.096 (5)0.082 (5)0.102 (5)−0.038 (4)0.023 (4)−0.002 (4)
O40.066 (3)0.059 (3)0.055 (3)−0.004 (4)−0.009 (2)−0.001 (4)
O50.086 (4)0.090 (7)0.072 (4)0.003 (4)−0.021 (3)0.009 (4)
O60.108 (5)0.077 (5)0.084 (5)−0.032 (4)−0.008 (4)0.007 (4)
O70.127 (7)0.129 (9)0.162 (9)0.001 (7)0.002 (6)0.026 (8)
N10.052 (4)0.054 (5)0.037 (3)−0.001 (3)0.003 (3)0.003 (3)
N30.057 (4)0.056 (5)0.057 (4)−0.004 (4)0.001 (3)−0.005 (4)
N20.053 (4)0.084 (6)0.052 (4)−0.003 (4)−0.006 (3)−0.002 (4)
C10.055 (5)0.063 (6)0.071 (5)−0.014 (4)−0.004 (4)0.009 (5)
C20.056 (4)0.056 (5)0.044 (4)0.000 (4)0.001 (3)0.007 (4)
C30.055 (4)0.073 (6)0.046 (4)−0.013 (4)0.002 (3)0.005 (4)
C40.060 (5)0.051 (5)0.039 (4)−0.008 (4)0.004 (3)0.006 (3)
C50.053 (5)0.073 (7)0.092 (7)0.009 (5)0.019 (4)0.020 (6)
C60.074 (6)0.057 (6)0.082 (6)−0.003 (5)0.020 (5)0.006 (5)
C70.089 (6)0.062 (6)0.054 (5)−0.014 (5)0.021 (4)0.000 (4)
C80.051 (5)0.083 (7)0.071 (6)−0.021 (5)−0.012 (4)0.007 (5)
C90.067 (5)0.064 (6)0.047 (5)−0.004 (5)0.005 (4)0.001 (4)
C100.062 (5)0.054 (5)0.044 (4)−0.014 (4)−0.005 (4)0.001 (4)
C110.056 (4)0.062 (6)0.047 (4)−0.009 (4)0.008 (3)−0.002 (4)
C120.097 (7)0.066 (6)0.058 (5)−0.014 (6)−0.005 (5)−0.010 (5)
C130.086 (7)0.099 (9)0.076 (7)−0.021 (6)−0.016 (5)−0.018 (6)
C140.088 (7)0.094 (8)0.051 (5)−0.015 (6)−0.006 (5)0.000 (5)
C150.057 (5)0.081 (7)0.043 (4)−0.005 (5)0.000 (3)0.011 (5)
C160.053 (4)0.075 (6)0.039 (4)−0.006 (4)0.001 (3)−0.002 (4)
C170.088 (7)0.126 (12)0.090 (7)0.011 (7)−0.037 (6)−0.001 (7)
C180.069 (5)0.076 (7)0.059 (5)−0.006 (5)0.014 (4)0.005 (5)
C190.088 (7)0.083 (8)0.083 (7)−0.026 (6)0.018 (5)0.003 (6)
C200.088 (7)0.061 (6)0.101 (8)−0.016 (6)−0.004 (6)−0.007 (6)
C210.067 (5)0.050 (5)0.077 (6)−0.006 (5)−0.016 (4)−0.005 (5)
C220.053 (4)0.063 (6)0.054 (5)−0.008 (4)−0.017 (4)−0.003 (4)
C230.049 (4)0.062 (6)0.047 (4)0.001 (4)−0.003 (3)−0.008 (4)
C240.067 (6)0.085 (7)0.063 (5)0.005 (5)−0.007 (4)−0.016 (5)
C250.066 (6)0.121 (8)0.075 (6)0.022 (7)0.001 (5)−0.012 (7)
C260.081 (7)0.132 (9)0.066 (6)0.025 (7)0.022 (5)0.015 (7)
C270.076 (5)0.105 (10)0.060 (5)0.001 (6)0.013 (4)0.015 (6)
C280.083 (7)0.061 (7)0.108 (9)−0.005 (5)−0.006 (6)−0.005 (6)
C290.092 (8)0.092 (8)0.088 (8)0.012 (7)−0.001 (6)−0.041 (7)
Cu1—N11.926 (10)C8—H80.9300
Cu1—O41.935 (5)C9—H90.9300
Cu1—O11.989 (5)C10—C111.439 (11)
Cu1—N32.029 (9)C10—H100.9300
Cu1—N22.325 (8)C11—C121.429 (13)
O1—C11.243 (12)C11—C161.428 (13)
O2—C11.245 (11)C12—C131.363 (15)
O3—C71.365 (12)C12—H120.9300
O3—H30.8200C13—C141.363 (17)
O4—C161.267 (12)C13—H130.9300
O5—C151.357 (14)C14—C151.347 (15)
O5—C171.425 (12)C14—H140.9300
O6—H300.8500C15—C161.450 (12)
O6—H310.8500C17—H17A0.9600
O7—H330.8500C17—H17B0.9600
O7—H320.8501C17—H17C0.9600
N1—C101.280 (11)C18—C191.337 (16)
N1—C21.482 (10)C18—H180.9300
N3—C181.325 (13)C19—C201.384 (17)
N3—C221.358 (13)C19—H190.9300
N2—C271.339 (12)C20—C211.400 (17)
N2—C231.361 (12)C20—H200.9300
C1—C21.521 (12)C21—C221.402 (14)
C2—C31.547 (11)C21—C281.418 (16)
C2—H20.9800C22—C231.422 (13)
C3—C41.493 (12)C23—C241.382 (14)
C3—H3A0.9700C24—C251.346 (16)
C3—H3B0.9700C24—C291.379 (18)
C4—C51.370 (13)C25—C261.327 (19)
C4—C91.418 (13)C25—H250.9300
C5—C61.405 (14)C26—C271.412 (17)
C5—H50.9300C26—H260.9300
C6—C71.396 (14)C27—H270.9300
C6—H60.9300C28—C291.39 (2)
C7—C81.373 (15)C28—H280.9300
C8—C91.404 (14)C29—H290.9300
N1—Cu1—O492.8 (3)C12—C11—C16122.4 (8)
N1—Cu1—O182.6 (3)C12—C11—C10116.1 (9)
O4—Cu1—O1166.9 (3)C16—C11—C10121.5 (8)
N1—Cu1—N3167.6 (3)C13—C12—C11117.7 (10)
O4—Cu1—N392.8 (3)C13—C12—H12121.1
O1—Cu1—N389.6 (3)C11—C12—H12121.1
N1—Cu1—N2113.2 (3)C14—C13—C12122.3 (11)
O4—Cu1—N297.8 (2)C14—C13—H13118.9
O1—Cu1—N295.3 (2)C12—C13—H13118.9
N3—Cu1—N277.1 (3)C15—C14—C13121.2 (10)
C1—O1—Cu1115.8 (6)C15—C14—H14119.4
C7—O3—H3109.5C13—C14—H14119.4
C16—O4—Cu1126.2 (7)C14—C15—O5126.5 (8)
C15—O5—C17115.1 (9)C14—C15—C16122.2 (10)
H30—O6—H31101.8O5—C15—C16111.2 (9)
H33—O7—H3298.7O4—C16—C11126.9 (7)
C10—N1—C2118.6 (9)O4—C16—C15118.9 (9)
C10—N1—Cu1127.3 (6)C11—C16—C15114.2 (8)
C2—N1—Cu1113.6 (6)O5—C17—H17A109.5
C18—N3—C22119.8 (9)O5—C17—H17B109.5
C18—N3—Cu1123.1 (8)H17A—C17—H17B109.5
C22—N3—Cu1117.1 (7)O5—C17—H17C109.5
C27—N2—C23117.8 (9)H17A—C17—H17C109.5
C27—N2—Cu1133.5 (7)H17B—C17—H17C109.5
C23—N2—Cu1108.7 (6)N3—C18—C19123.1 (10)
O1—C1—O2125.1 (9)N3—C18—H18118.5
O1—C1—C2118.1 (7)C19—C18—H18118.5
O2—C1—C2116.7 (9)C18—C19—C20120.6 (10)
N1—C2—C1107.4 (7)C18—C19—H19119.7
N1—C2—C3110.8 (6)C20—C19—H19119.7
C1—C2—C3108.4 (7)C19—C20—C21117.3 (10)
N1—C2—H2110.1C19—C20—H20121.4
C1—C2—H2110.1C21—C20—H20121.4
C3—C2—H2110.1C22—C21—C20119.8 (10)
C4—C3—C2113.5 (7)C22—C21—C28118.6 (10)
C4—C3—H3A108.9C20—C21—C28121.6 (10)
C2—C3—H3A108.9N3—C22—C21119.5 (9)
C4—C3—H3B108.9N3—C22—C23120.1 (9)
C2—C3—H3B108.9C21—C22—C23120.4 (9)
H3A—C3—H3B107.7N2—C23—C24122.2 (9)
C5—C4—C9118.8 (8)N2—C23—C22117.1 (8)
C5—C4—C3120.2 (8)C24—C23—C22120.7 (10)
C9—C4—C3121.0 (8)C25—C24—C23118.7 (12)
C4—C5—C6121.9 (8)C25—C24—C29123.8 (12)
C4—C5—H5119.1C23—C24—C29117.5 (11)
C6—C5—H5119.1C26—C25—C24120.9 (12)
C7—C6—C5118.8 (9)C26—C25—H25119.5
C7—C6—H6120.6C24—C25—H25119.5
C5—C6—H6120.6C25—C26—C27119.9 (11)
O3—C7—C8118.8 (9)C25—C26—H26120.1
O3—C7—C6120.9 (10)C27—C26—H26120.1
C8—C7—C6120.3 (9)N2—C27—C26120.6 (12)
C7—C8—C9120.8 (9)N2—C27—H27119.7
C7—C8—H8119.6C26—C27—H27119.7
C9—C8—H8119.6C29—C28—C21118.2 (11)
C8—C9—C4119.4 (10)C29—C28—H28120.9
C8—C9—H9120.3C21—C28—H28120.9
C4—C9—H9120.3C24—C29—C28124.4 (12)
N1—C10—C11124.7 (9)C24—C29—H29117.8
N1—C10—H10117.6C28—C29—H29117.8
C11—C10—H10117.6
C1—C2—C3—C4173.6 (7)
D—H···AD—HH···AD···AD—H···A
O6—H31···O20.851.932.684 (9)148
O3—H3···O6i0.822.532.843 (11)104
O6—H30···O6ii0.852.442.888 (11)114
O7—H33···O2iii0.852.152.721 (13)125
C18—H18···O5iv0.932.463.268 (13)145
Table 1

Selected bond lengths (Å)

Cu1—N11.926 (10)
Cu1—O41.935 (5)
Cu1—O11.989 (5)
Cu1—N32.029 (9)
Cu1—N22.325 (8)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H31⋯O20.851.932.684 (9)148
O3—H3⋯O6i0.822.532.843 (11)104
O6—H30⋯O6ii0.852.442.888 (11)114
O7—H33⋯O2iii0.852.152.721 (13)125
C18—H18⋯O5iv0.932.463.268 (13)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,2'-Bipyridine-κN,N')[N-(2-oxido-1-naphthyl-idene)threoninato-κO,N,O]copper(II).

Authors:  Zhanglei Qiu; Lianzhi Li; Yan Liu; Tao Xu; Daqi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-30
  2 in total

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