Literature DB >> 21202139

3-Bromo-meth-yl-2-chloro-meth-yl-1-phenyl-sulfon-yl-1H-indole.

G Chakkaravarthi, V Dhayalan, A K Mohanakrishnan, V Manivannan.   

Abstract

In the title compound, C(16)H(13)BrClNO(2)S, the indole mean plane forms a dihedral angle of 73.59 (19)° with the phenyl ring. The mol-ecular structure is stabilized by weak intra-molecular C-H⋯O inter-actions. The Br atom is disordered over two positions with site occupancy factors of 0.7 and 0.3.

Entities:  

Year:  2008        PMID: 21202139      PMCID: PMC2960947          DOI: 10.1107/S1600536808007678

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Chakkaravarthi et al. (2007 ▶, 2008 ▶). For the biological activities of indole derivatives, see: Chai et al. (2006 ▶); Nieto et al. (2005 ▶); Olgen & Coban (2003 ▶).

Experimental

Crystal data

C16H13BrClNO2S M = 398.69 Monoclinic, a = 11.8501 (9) Å b = 16.3525 (13) Å c = 8.5793 (6) Å β = 108.766 (3)° V = 1574.1 (2) Å3 Z = 4 Mo Kα radiation μ = 2.92 mm−1 T = 295 (2) K 0.16 × 0.14 × 0.14 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.559, T max = 0.665 14367 measured reflections 2770 independent reflections 1822 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.231 S = 1.06 2770 reflections 209 parameters 12 restraints H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.92 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007678/bt2689sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007678/bt2689Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13BrClNO2SF000 = 800
Mr = 398.69Dx = 1.682 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4037 reflections
a = 11.8501 (9) Åθ = 2.5–25.0º
b = 16.3525 (13) ŵ = 2.92 mm1
c = 8.5793 (6) ÅT = 295 (2) K
β = 108.766 (3)ºBlock, colourless
V = 1574.1 (2) Å30.16 × 0.14 × 0.14 mm
Z = 4
Bruker Kappa APEXII diffractometer2770 independent reflections
Radiation source: fine-focus sealed tube1822 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.045
T = 295(2) Kθmax = 25.0º
ω and φ scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −14→13
Tmin = 0.559, Tmax = 0.665k = −19→19
14367 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.231  w = 1/[σ2(Fo2) + (0.127P)2 + 1.9456P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2770 reflectionsΔρmax = 0.42 e Å3
209 parametersΔρmin = −0.91 e Å3
12 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/UeqOcc. (<1)
Cl10.90925 (16)−0.10531 (12)0.5085 (3)0.0872 (6)
Br10.8135 (6)0.1043 (5)0.3205 (5)0.1572 (16)0.709 (16)
Br1A0.7901 (4)0.1251 (3)0.3139 (9)0.093 (2)0.291 (16)
S10.70049 (14)−0.13649 (11)0.8192 (2)0.0743 (6)
O10.6340 (5)−0.1191 (4)0.9258 (8)0.114 (2)
O20.6743 (5)−0.2077 (3)0.7212 (8)0.109 (2)
N10.6795 (4)−0.0573 (3)0.6922 (5)0.0539 (11)
C10.8512 (6)−0.1369 (4)0.9320 (7)0.0655 (17)
C20.8952 (7)−0.0826 (5)1.0604 (8)0.097 (2)
H20.8449−0.04491.08540.117*
C31.0161 (8)−0.0849 (8)1.1523 (11)0.127 (4)
H31.0474−0.04851.23870.153*
C41.0885 (9)−0.1418 (7)1.1133 (13)0.122 (4)
H41.1688−0.14411.17530.147*
C51.0442 (8)−0.1951 (6)0.9845 (13)0.113 (3)
H51.0947−0.23250.95900.135*
C60.9256 (7)−0.1932 (5)0.8934 (10)0.086 (2)
H60.8953−0.22950.80650.103*
C70.7000 (5)−0.0556 (3)0.5384 (7)0.0574 (14)
C80.6681 (5)0.0197 (3)0.4715 (6)0.0535 (14)
C90.6288 (5)0.0680 (3)0.5809 (5)0.0463 (12)
C100.5887 (6)0.1477 (4)0.5707 (7)0.0622 (15)
H100.58370.17960.47900.075*
C110.5563 (6)0.1790 (4)0.6984 (8)0.078 (2)
H110.52950.23270.69390.094*
C120.5633 (7)0.1313 (5)0.8332 (9)0.083 (2)
H120.54060.15370.91820.099*
C130.6026 (6)0.0519 (5)0.8471 (6)0.0687 (18)
H130.60640.02030.93880.082*
C140.6365 (4)0.0206 (3)0.7184 (6)0.0468 (12)
C150.7557 (4)−0.1232 (4)0.4743 (11)0.086 (2)
H15A0.7151−0.12940.35720.103*
H15B0.7464−0.17390.52780.103*
C160.6722 (5)0.0443 (4)0.3064 (7)0.084 (2)
H16A0.60300.07770.25200.101*0.709 (16)
H16B0.6686−0.00420.24000.101*0.709 (16)
H16C0.60520.08020.25600.101*0.291 (16)
H16D0.6645−0.00330.23630.101*0.291 (16)
U11U22U33U12U13U23
Cl10.0663 (11)0.0872 (13)0.1176 (15)0.0181 (9)0.0429 (10)−0.0109 (10)
Br10.235 (3)0.159 (3)0.106 (2)−0.112 (2)0.095 (2)−0.0245 (15)
Br1A0.063 (4)0.105 (3)0.098 (3)−0.014 (2)0.008 (2)0.041 (3)
S10.0540 (9)0.0688 (11)0.0926 (12)−0.0071 (8)0.0129 (8)0.0402 (9)
O10.082 (3)0.142 (5)0.130 (5)0.015 (3)0.053 (3)0.087 (4)
O20.087 (3)0.059 (3)0.144 (5)−0.029 (3)−0.016 (3)0.035 (3)
N10.057 (3)0.049 (3)0.052 (2)0.000 (2)0.012 (2)0.013 (2)
C10.061 (4)0.067 (4)0.065 (4)−0.010 (3)0.015 (3)0.028 (3)
C20.100 (6)0.123 (7)0.058 (4)−0.002 (5)0.010 (4)0.011 (4)
C30.123 (8)0.145 (10)0.079 (6)−0.039 (8)−0.016 (6)0.010 (6)
C40.077 (6)0.138 (9)0.121 (8)−0.020 (6)−0.010 (6)0.051 (7)
C50.076 (6)0.116 (7)0.139 (8)0.024 (5)0.025 (6)0.041 (7)
C60.072 (5)0.077 (5)0.096 (5)0.011 (4)0.009 (4)0.019 (4)
C70.064 (4)0.051 (3)0.059 (3)−0.005 (3)0.023 (3)−0.008 (3)
C80.070 (4)0.053 (3)0.039 (3)−0.007 (3)0.020 (2)−0.002 (2)
C90.047 (3)0.052 (3)0.034 (2)−0.002 (2)0.005 (2)−0.001 (2)
C100.066 (4)0.050 (3)0.061 (3)0.006 (3)0.007 (3)0.005 (3)
C110.066 (4)0.066 (4)0.095 (5)0.014 (3)0.014 (4)−0.021 (4)
C120.071 (4)0.106 (6)0.073 (4)0.003 (4)0.028 (4)−0.036 (4)
C130.062 (4)0.104 (5)0.037 (3)−0.001 (4)0.013 (3)−0.002 (3)
C140.043 (3)0.057 (3)0.038 (2)−0.003 (2)0.009 (2)0.004 (2)
C150.079 (3)0.074 (5)0.110 (6)−0.007 (4)0.039 (4)−0.026 (4)
C160.134 (5)0.073 (4)0.051 (3)−0.026 (4)0.038 (4)0.001 (3)
Cl1—C151.772 (4)C7—C81.359 (8)
Br1—C161.9114 (11)C7—C151.481 (9)
Br1A—C161.9084 (11)C8—C91.415 (8)
S1—O21.411 (6)C8—C161.489 (7)
S1—O11.415 (6)C9—C101.381 (8)
S1—N11.659 (4)C9—C141.390 (7)
S1—C11.737 (6)C10—C111.371 (7)
N1—C141.417 (7)C10—H100.9300
N1—C71.417 (7)C11—C121.375 (8)
C1—C21.380 (8)C11—H110.9300
C1—C61.386 (10)C12—C131.372 (10)
C2—C31.396 (8)C12—H120.9300
C2—H20.9300C13—C141.387 (8)
C3—C41.379 (9)C13—H130.9300
C3—H30.9300C15—H15A0.9700
C4—C51.371 (9)C15—H15B0.9700
C4—H40.9300C16—H16A0.9700
C5—C61.371 (12)C16—H16B0.9700
C5—H50.9300C16—H16C0.9700
C6—H60.9300C16—H16D0.9700
O2—S1—O1119.3 (4)C9—C10—H10120.6
O2—S1—N1107.2 (3)C10—C11—C12120.3 (6)
O1—S1—N1105.7 (3)C10—C11—H11119.9
O2—S1—C1108.5 (3)C12—C11—H11119.9
O1—S1—C1109.1 (4)C13—C12—C11122.5 (6)
N1—S1—C1106.2 (3)C13—C12—H12118.8
C14—N1—C7108.0 (4)C11—C12—H12118.8
C14—N1—S1125.7 (4)C12—C13—C14117.1 (6)
C7—N1—S1126.3 (4)C12—C13—H13121.4
C2—C1—C6120.8 (7)C14—C13—H13121.4
C2—C1—S1119.9 (6)C13—C14—C9120.9 (5)
C6—C1—S1119.3 (5)C13—C14—N1131.9 (5)
C1—C2—C3119.3 (8)C9—C14—N1107.2 (4)
C1—C2—H2120.4C7—C15—Cl1111.8 (4)
C3—C2—H2120.4C7—C15—H15A109.3
C4—C3—C2119.1 (9)Cl1—C15—H15A109.3
C4—C3—H3120.4C7—C15—H15B109.3
C2—C3—H3120.4Cl1—C15—H15B109.3
C5—C4—C3121.2 (9)H15A—C15—H15B107.9
C5—C4—H4119.4C8—C16—Br1A113.8 (4)
C3—C4—H4119.4C8—C16—Br1112.0 (4)
C6—C5—C4120.1 (9)C8—C16—H16A109.2
C6—C5—H5119.9Br1A—C16—H16A97.1
C4—C5—H5119.9Br1—C16—H16A109.2
C5—C6—C1119.5 (8)C8—C16—H16B109.2
C5—C6—H6120.3Br1A—C16—H16B118.6
C1—C6—H6120.3Br1—C16—H16B109.2
C8—C7—N1107.6 (5)H16A—C16—H16B107.9
C8—C7—C15128.1 (6)C8—C16—H16C108.4
N1—C7—C15124.2 (6)Br1A—C16—H16C94.7
C7—C8—C9109.4 (5)Br1—C16—H16C107.0
C7—C8—C16123.8 (6)H16B—C16—H16C111.0
C9—C8—C16126.7 (5)C8—C16—H16D110.3
C10—C9—C14120.5 (5)Br1A—C16—H16D119.9
C10—C9—C8131.7 (5)Br1—C16—H16D110.9
C14—C9—C8107.8 (5)H16A—C16—H16D104.9
C11—C10—C9118.7 (5)H16C—C16—H16D108.0
C11—C10—H10120.6
O2—S1—N1—C14146.0 (5)C15—C7—C8—C167.1 (9)
O1—S1—N1—C1417.8 (6)C7—C8—C9—C10179.3 (6)
C1—S1—N1—C14−98.1 (5)C16—C8—C9—C10−2.1 (10)
O2—S1—N1—C7−33.4 (6)C7—C8—C9—C14−0.3 (6)
O1—S1—N1—C7−161.6 (5)C16—C8—C9—C14178.3 (5)
C1—S1—N1—C782.5 (5)C14—C9—C10—C11−0.2 (8)
O2—S1—C1—C2−167.5 (6)C8—C9—C10—C11−179.8 (6)
O1—S1—C1—C2−36.0 (6)C9—C10—C11—C12−0.4 (10)
N1—S1—C1—C277.6 (6)C10—C11—C12—C130.3 (11)
O2—S1—C1—C611.3 (6)C11—C12—C13—C140.4 (10)
O1—S1—C1—C6142.8 (5)C12—C13—C14—C9−0.9 (8)
N1—S1—C1—C6−103.7 (5)C12—C13—C14—N1−179.4 (6)
C6—C1—C2—C3−0.2 (11)C10—C9—C14—C130.9 (8)
S1—C1—C2—C3178.6 (7)C8—C9—C14—C13−179.4 (5)
C1—C2—C3—C4−0.5 (15)C10—C9—C14—N1179.7 (5)
C2—C3—C4—C51.1 (17)C8—C9—C14—N1−0.6 (6)
C3—C4—C5—C6−1.0 (16)C7—N1—C14—C13179.9 (6)
C4—C5—C6—C10.3 (13)S1—N1—C14—C130.4 (8)
C2—C1—C6—C50.2 (11)C7—N1—C14—C91.3 (6)
S1—C1—C6—C5−178.5 (6)S1—N1—C14—C9−178.2 (4)
C14—N1—C7—C8−1.5 (6)C8—C7—C15—Cl176.0 (8)
S1—N1—C7—C8178.0 (4)N1—C7—C15—Cl1−98.7 (7)
C14—N1—C7—C15174.1 (5)C7—C8—C16—Br1A−112.1 (6)
S1—N1—C7—C15−6.4 (8)C9—C8—C16—Br1A69.5 (8)
N1—C7—C8—C91.1 (6)C7—C8—C16—Br1−98.2 (7)
C15—C7—C8—C9−174.3 (5)C9—C8—C16—Br183.4 (8)
N1—C7—C8—C16−177.5 (5)
D—H···AD—HH···AD···AD—H···A
C6—H6···O20.932.512.877 (9)104
C13—H13···O10.932.312.873 (10)118
C15—H15B···O20.972.172.939 (10)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O20.932.512.877 (9)104
C13—H13⋯O10.932.312.873 (10)118
C15—H15B⋯O20.972.172.939 (10)136
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