Literature DB >> 24454225

(E)-1-[2-(4-Fluoro-2-nitro-styr-yl)-1-phenyl-sulfonyl-1H-indol-3-yl]propan-1-one.

M Umadevi1, V Saravanan2, R Yamuna3, A K Mohanakrishnan2, G Chakkaravarthi4.   

Abstract

In the title compound, C25H19FN2O5S, the substituted phenyl ring makes a dihedral angle of 12.26 (9)° with the indole ring system. The nitro group is twisted at an angle of 26.92 (8)° out of the plane of the ring to which it is attached. The mol-ecular structure is stabilized by weak C-H⋯O hydrogen bonds. In the crystal, weak C-H⋯O, C-H⋯F and π-π [centroid-centroid distance = 3.6645 (11) Å] inter-actions link the mol-ecules, forming a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454225      PMCID: PMC3885049          DOI: 10.1107/S1600536813030961

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Pomarnacka & Kozlarska-Kedra (2003 ▶); Srivastava et al. (2011 ▶). For related structures, see: Chakkaravarthi et al. (2008 ▶, 2010 ▶). For details of the configuration at the S atom, see: Bassindale (1984 ▶). For details of N-atom hybridization, see: Beddoes et al. (1986 ▶).

Experimental

Crystal data

C25H19FN2O5S M = 478.48 Triclinic, a = 8.2615 (3) Å b = 10.7624 (5) Å c = 13.2432 (6) Å α = 68.606 (2)° β = 80.554 (3)° γ = 81.012 (2)° V = 1075.53 (8) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 295 K 0.30 × 0.24 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.942, T max = 0.961 27388 measured reflections 8185 independent reflections 5506 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.176 S = 1.03 8185 reflections 308 parameters H-atom parameters constrained Δρmax = 0.96 e Å−3 Δρmin = −0.61 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813030961/bt6945sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030961/bt6945Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813030961/bt6945Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H19FN2O5SZ = 2
Mr = 478.48F(000) = 496
Triclinic, P1Dx = 1.477 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2615 (3) ÅCell parameters from 5619 reflections
b = 10.7624 (5) Åθ = 2.1–31.1°
c = 13.2432 (6) ŵ = 0.20 mm1
α = 68.606 (2)°T = 295 K
β = 80.554 (3)°Block, colourless
γ = 81.012 (2)°0.30 × 0.24 × 0.20 mm
V = 1075.53 (8) Å3
Bruker APEXII diffractometer8185 independent reflections
Radiation source: fine-focus sealed tube5506 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scanθmax = 35.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.942, Tmax = 0.961k = −16→17
27388 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.089P)2 + 0.2703P] where P = (Fo2 + 2Fc2)/3
8185 reflections(Δ/σ)max < 0.001
308 parametersΔρmax = 0.96 e Å3
0 restraintsΔρmin = −0.61 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.05337 (18)0.17906 (15)0.76350 (12)0.0387 (3)
C2−0.0663 (2)0.06833 (18)0.85866 (14)0.0476 (4)
H20.02750.02030.89010.057*
C3−0.2214 (2)0.0306 (2)0.90598 (16)0.0563 (4)
H3−0.2324−0.04300.97020.068*
C4−0.3602 (2)0.1021 (2)0.85825 (16)0.0540 (4)
H4−0.46410.07620.89070.065*
C5−0.3457 (2)0.2109 (2)0.76326 (16)0.0548 (4)
H5−0.43970.25760.73140.066*
C6−0.1920 (2)0.25156 (19)0.71465 (14)0.0489 (4)
H6−0.18170.32570.65070.059*
C70.1475 (2)0.19323 (17)0.50807 (12)0.0439 (3)
C80.0691 (3)0.3166 (2)0.44803 (15)0.0596 (5)
H80.03850.38510.47650.072*
C90.0389 (3)0.3323 (2)0.34425 (16)0.0668 (6)
H9−0.01300.41350.30200.080*
C100.0836 (3)0.2308 (2)0.30181 (15)0.0637 (5)
H100.06270.24570.23120.076*
C110.1583 (2)0.1080 (2)0.36119 (13)0.0544 (4)
H110.18580.03970.33220.065*
C120.1919 (2)0.08841 (17)0.46722 (12)0.0429 (3)
C130.27195 (19)−0.02364 (15)0.54893 (12)0.0403 (3)
C140.27322 (18)0.01380 (14)0.63737 (11)0.0367 (3)
C150.3524 (3)−0.14616 (18)0.52664 (14)0.0522 (4)
C160.4209 (3)−0.26746 (18)0.61156 (15)0.0563 (4)
H16A0.3365−0.29570.67300.068*
H16B0.5119−0.24490.63730.068*
C170.4816 (4)−0.3835 (2)0.5708 (2)0.0767 (7)
H17A0.3896−0.41370.55370.115*
H17B0.5345−0.45580.62650.115*
H17C0.5589−0.35420.50650.115*
C180.34816 (19)−0.05675 (15)0.73895 (11)0.0380 (3)
H180.4365−0.02200.75100.046*
C190.29602 (19)−0.16804 (15)0.81477 (11)0.0380 (3)
H190.2011−0.19760.80590.046*
C200.37971 (18)−0.24690 (14)0.91153 (11)0.0360 (3)
C210.5492 (2)−0.24341 (16)0.90850 (14)0.0454 (3)
H210.6053−0.18740.84570.054*
C220.6361 (2)−0.31934 (18)0.99463 (15)0.0510 (4)
H220.7478−0.31250.99130.061*
C230.5542 (2)−0.40558 (17)1.08570 (15)0.0511 (4)
C240.3899 (2)−0.41643 (16)1.09468 (13)0.0462 (4)
H240.3370−0.47601.15690.055*
C250.30441 (19)−0.33571 (15)1.00810 (11)0.0384 (3)
N10.20107 (17)0.14790 (13)0.61298 (10)0.0410 (3)
N20.12683 (19)−0.34714 (16)1.02366 (11)0.0489 (3)
O10.12824 (18)0.36656 (12)0.64011 (11)0.0580 (3)
O20.25410 (15)0.17470 (13)0.78405 (10)0.0492 (3)
O30.3708 (3)−0.1422 (2)0.43278 (14)0.1065 (8)
O40.03576 (17)−0.25160 (16)0.97436 (13)0.0684 (4)
O50.0783 (2)−0.45267 (19)1.08539 (15)0.0913 (6)
S10.14288 (5)0.22764 (4)0.70332 (3)0.04104 (11)
F10.64046 (18)−0.48260 (14)1.16881 (11)0.0778 (4)
U11U22U33U12U13U23
C10.0383 (7)0.0433 (7)0.0372 (7)−0.0005 (5)−0.0030 (5)−0.0194 (6)
C20.0446 (8)0.0492 (9)0.0453 (8)−0.0023 (6)−0.0044 (6)−0.0135 (7)
C30.0536 (10)0.0562 (10)0.0553 (10)−0.0114 (8)0.0045 (8)−0.0171 (8)
C40.0426 (8)0.0676 (11)0.0620 (11)−0.0103 (8)0.0031 (7)−0.0366 (9)
C50.0401 (8)0.0756 (12)0.0585 (10)0.0042 (8)−0.0096 (7)−0.0372 (10)
C60.0465 (9)0.0570 (10)0.0430 (8)0.0034 (7)−0.0073 (6)−0.0199 (7)
C70.0439 (8)0.0475 (8)0.0315 (6)−0.0027 (6)−0.0015 (6)−0.0055 (6)
C80.0646 (11)0.0569 (11)0.0416 (9)0.0094 (9)−0.0054 (8)−0.0053 (8)
C90.0628 (12)0.0732 (13)0.0416 (9)0.0056 (10)−0.0100 (8)0.0033 (9)
C100.0587 (11)0.0875 (15)0.0335 (8)−0.0111 (10)−0.0098 (7)−0.0047 (9)
C110.0584 (10)0.0704 (12)0.0337 (7)−0.0154 (9)−0.0069 (7)−0.0131 (7)
C120.0430 (8)0.0509 (8)0.0304 (6)−0.0113 (6)−0.0013 (5)−0.0078 (6)
C130.0456 (8)0.0412 (7)0.0322 (6)−0.0095 (6)−0.0010 (5)−0.0100 (5)
C140.0390 (7)0.0370 (7)0.0303 (6)−0.0049 (5)−0.0004 (5)−0.0082 (5)
C150.0694 (11)0.0485 (9)0.0438 (8)−0.0094 (8)−0.0045 (8)−0.0216 (7)
C160.0739 (12)0.0455 (9)0.0468 (9)0.0002 (8)0.0042 (8)−0.0202 (7)
C170.1053 (19)0.0522 (11)0.0682 (13)−0.0006 (11)0.0154 (13)−0.0298 (10)
C180.0422 (7)0.0379 (7)0.0326 (6)−0.0020 (5)−0.0038 (5)−0.0118 (5)
C190.0397 (7)0.0407 (7)0.0315 (6)−0.0033 (5)−0.0026 (5)−0.0110 (5)
C200.0412 (7)0.0340 (6)0.0318 (6)−0.0024 (5)−0.0033 (5)−0.0116 (5)
C210.0423 (8)0.0421 (8)0.0453 (8)−0.0035 (6)−0.0041 (6)−0.0085 (6)
C220.0444 (8)0.0480 (9)0.0570 (10)−0.0009 (7)−0.0135 (7)−0.0127 (7)
C230.0628 (11)0.0431 (8)0.0458 (8)0.0028 (7)−0.0217 (8)−0.0105 (7)
C240.0606 (10)0.0419 (8)0.0334 (7)−0.0055 (7)−0.0074 (6)−0.0089 (6)
C250.0460 (8)0.0367 (7)0.0322 (6)−0.0055 (5)−0.0031 (5)−0.0119 (5)
N10.0473 (7)0.0399 (6)0.0302 (5)0.0019 (5)−0.0018 (5)−0.0093 (5)
N20.0490 (8)0.0547 (8)0.0382 (7)−0.0129 (6)0.0003 (6)−0.0096 (6)
O10.0655 (8)0.0389 (6)0.0634 (8)−0.0044 (5)0.0000 (6)−0.0142 (6)
O20.0431 (6)0.0580 (7)0.0523 (7)−0.0025 (5)−0.0092 (5)−0.0258 (6)
O30.187 (2)0.0818 (12)0.0574 (9)0.0227 (13)−0.0319 (12)−0.0396 (9)
O40.0455 (7)0.0704 (9)0.0690 (9)−0.0035 (6)−0.0025 (6)−0.0031 (7)
O50.0707 (10)0.0820 (11)0.0877 (12)−0.0339 (9)−0.0065 (9)0.0192 (9)
S10.0421 (2)0.03958 (19)0.0412 (2)−0.00283 (14)−0.00230 (14)−0.01553 (15)
F10.0838 (9)0.0747 (8)0.0621 (7)−0.0007 (7)−0.0385 (7)0.0009 (6)
C1—C21.385 (2)C15—O31.213 (2)
C1—C61.391 (2)C15—C161.482 (3)
C1—S11.7532 (16)C16—C171.520 (3)
C2—C31.383 (3)C16—H16A0.9700
C2—H20.9300C16—H16B0.9700
C3—C41.383 (3)C17—H17A0.9600
C3—H30.9300C17—H17B0.9600
C4—C51.374 (3)C17—H17C0.9600
C4—H40.9300C18—C191.330 (2)
C5—C61.385 (3)C18—H180.9300
C5—H50.9300C19—C201.4678 (19)
C6—H60.9300C19—H190.9300
C7—C81.394 (2)C20—C211.401 (2)
C7—C121.397 (2)C20—C251.403 (2)
C7—N11.4155 (19)C21—C221.375 (2)
C8—C91.382 (3)C21—H210.9300
C8—H80.9300C22—C231.373 (3)
C9—C101.379 (3)C22—H220.9300
C9—H90.9300C23—F11.3465 (19)
C10—C111.375 (3)C23—C241.363 (3)
C10—H100.9300C24—C251.384 (2)
C11—C121.410 (2)C24—H240.9300
C11—H110.9300C25—N21.466 (2)
C12—C131.448 (2)N1—S11.6824 (13)
C13—C141.373 (2)N2—O51.215 (2)
C13—C151.488 (2)N2—O41.216 (2)
C14—N11.4131 (19)O1—S11.4193 (13)
C14—C181.467 (2)O2—S11.4235 (13)
C2—C1—C6121.56 (16)C17—C16—H16A109.0
C2—C1—S1118.92 (12)C15—C16—H16B109.0
C6—C1—S1119.52 (13)C17—C16—H16B109.0
C3—C2—C1118.70 (16)H16A—C16—H16B107.8
C3—C2—H2120.7C16—C17—H17A109.5
C1—C2—H2120.7C16—C17—H17B109.5
C2—C3—C4120.28 (18)H17A—C17—H17B109.5
C2—C3—H3119.9C16—C17—H17C109.5
C4—C3—H3119.9H17A—C17—H17C109.5
C5—C4—C3120.48 (17)H17B—C17—H17C109.5
C5—C4—H4119.8C19—C18—C14123.25 (14)
C3—C4—H4119.8C19—C18—H18118.4
C4—C5—C6120.46 (17)C14—C18—H18118.4
C4—C5—H5119.8C18—C19—C20123.78 (14)
C6—C5—H5119.8C18—C19—H19118.1
C5—C6—C1118.52 (17)C20—C19—H19118.1
C5—C6—H6120.7C21—C20—C25115.36 (14)
C1—C6—H6120.7C21—C20—C19119.86 (13)
C8—C7—C12122.28 (16)C25—C20—C19124.64 (14)
C8—C7—N1130.77 (17)C22—C21—C20122.68 (15)
C12—C7—N1106.93 (13)C22—C21—H21118.7
C9—C8—C7117.0 (2)C20—C21—H21118.7
C9—C8—H8121.5C23—C22—C21118.50 (17)
C7—C8—H8121.5C23—C22—H22120.8
C10—C9—C8121.67 (19)C21—C22—H22120.8
C10—C9—H9119.2F1—C23—C24119.04 (17)
C8—C9—H9119.2F1—C23—C22118.45 (17)
C11—C10—C9121.72 (18)C24—C23—C22122.51 (16)
C11—C10—H10119.1C23—C24—C25117.75 (15)
C9—C10—H10119.1C23—C24—H24121.1
C10—C11—C12118.23 (19)C25—C24—H24121.1
C10—C11—H11120.9C24—C25—C20123.15 (15)
C12—C11—H11120.9C24—C25—N2115.60 (14)
C7—C12—C11119.09 (16)C20—C25—N2121.24 (13)
C7—C12—C13108.19 (13)C14—N1—C7108.72 (12)
C11—C12—C13132.70 (17)C14—N1—S1125.70 (10)
C14—C13—C12107.60 (14)C7—N1—S1123.84 (11)
C14—C13—C15129.90 (15)O5—N2—O4123.33 (17)
C12—C13—C15122.08 (14)O5—N2—C25117.83 (16)
C13—C14—N1108.51 (13)O4—N2—C25118.84 (14)
C13—C14—C18130.55 (14)O1—S1—O2120.42 (8)
N1—C14—C18120.63 (13)O1—S1—N1105.64 (7)
O3—C15—C16119.04 (18)O2—S1—N1106.91 (7)
O3—C15—C13117.57 (18)O1—S1—C1109.25 (8)
C16—C15—C13123.24 (14)O2—S1—C1108.80 (7)
C15—C16—C17113.04 (17)N1—S1—C1104.66 (7)
C15—C16—H16A109.0
C6—C1—C2—C3−0.6 (3)C25—C20—C21—C22−1.3 (2)
S1—C1—C2—C3179.82 (14)C19—C20—C21—C22−177.11 (15)
C1—C2—C3—C40.5 (3)C20—C21—C22—C232.4 (3)
C2—C3—C4—C50.2 (3)C21—C22—C23—F1178.20 (16)
C3—C4—C5—C6−0.7 (3)C21—C22—C23—C24−1.5 (3)
C4—C5—C6—C10.6 (3)F1—C23—C24—C25179.81 (15)
C2—C1—C6—C50.0 (2)C22—C23—C24—C25−0.5 (3)
S1—C1—C6—C5179.63 (13)C23—C24—C25—C201.7 (2)
C12—C7—C8—C9−1.0 (3)C23—C24—C25—N2−177.55 (15)
N1—C7—C8—C9177.10 (18)C21—C20—C25—C24−0.8 (2)
C7—C8—C9—C100.2 (3)C19—C20—C25—C24174.77 (14)
C8—C9—C10—C111.0 (3)C21—C20—C25—N2178.40 (14)
C9—C10—C11—C12−1.3 (3)C19—C20—C25—N2−6.0 (2)
C8—C7—C12—C110.7 (3)C13—C14—N1—C72.37 (17)
N1—C7—C12—C11−177.79 (14)C18—C14—N1—C7176.59 (13)
C8—C7—C12—C13179.31 (17)C13—C14—N1—S1167.73 (11)
N1—C7—C12—C130.79 (17)C18—C14—N1—S1−18.1 (2)
C10—C11—C12—C70.4 (3)C8—C7—N1—C14179.72 (18)
C10—C11—C12—C13−177.72 (17)C12—C7—N1—C14−1.92 (17)
C7—C12—C13—C140.66 (17)C8—C7—N1—S114.0 (3)
C11—C12—C13—C14178.97 (17)C12—C7—N1—S1−167.62 (11)
C7—C12—C13—C15−172.65 (15)C24—C25—N2—O5−27.0 (2)
C11—C12—C13—C155.7 (3)C20—C25—N2—O5153.67 (18)
C12—C13—C14—N1−1.84 (16)C24—C25—N2—O4153.21 (16)
C15—C13—C14—N1170.76 (16)C20—C25—N2—O4−26.1 (2)
C12—C13—C14—C18−175.29 (15)C14—N1—S1—O1161.77 (13)
C15—C13—C14—C18−2.7 (3)C7—N1—S1—O1−34.98 (15)
C14—C13—C15—O3−161.0 (2)C14—N1—S1—O232.38 (15)
C12—C13—C15—O310.7 (3)C7—N1—S1—O2−164.37 (13)
C14—C13—C15—C1614.4 (3)C14—N1—S1—C1−82.94 (14)
C12—C13—C15—C16−173.90 (17)C7—N1—S1—C180.31 (14)
O3—C15—C16—C17−10.1 (3)C2—C1—S1—O1−154.93 (13)
C13—C15—C16—C17174.49 (19)C6—C1—S1—O125.46 (15)
C13—C14—C18—C19−67.9 (2)C2—C1—S1—O2−21.66 (15)
N1—C14—C18—C19119.31 (17)C6—C1—S1—O2158.73 (12)
C14—C18—C19—C20173.75 (13)C2—C1—S1—N192.33 (13)
C18—C19—C20—C21−26.3 (2)C6—C1—S1—N1−87.28 (13)
C18—C19—C20—C25158.25 (15)
D—H···AD—HH···AD···AD—H···A
C8—H8···O10.932.332.913 (3)120
C11—H11···O30.932.402.905 (3)114
C16—H16A···F1i0.972.543.192 (2)124
C22—H22···O4ii0.932.523.438 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯O10.932.332.913 (3)120
C11—H11⋯O30.932.402.905 (3)114
C16—H16A⋯F1i 0.972.543.192 (2)124
C22—H22⋯O4ii 0.932.523.438 (2)170

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of 1-(6-chloro-1,1-dioxo-1,4,2-benzodithiazin-3-yl)semi-carbazides and their transformation into 4-chloro-2-mercapto-N-(4,5-dihydro-5-oxo-4-phenyl-1H-1,2,4-triazol-3-yl)benzenesulfonamides as potential anticancer and anti-HIV agents.

Authors:  Elzbieta Pomarnacka; Iwona Kozlarska-Kedra
Journal:  Farmaco       Date:  2003-06

3.  3-Bromo-meth-yl-2-chloro-meth-yl-1-phenyl-sulfon-yl-1H-indole.

Authors:  G Chakkaravarthi; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-29

4.  (4-Bromo-phen-yl)(1-phenyl-sulfonyl-1H-indol-2-yl)methanone.

Authors:  G Chakkaravarthi; R Panchatcharam; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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