Literature DB >> 21201799

N-Acetyl-2-hydroxy-N'-[methoxy(1-methylindol-2-yl)methyl]benzohydrazide.

Wagee A Yehye1, Noorsaadah Abdul Rahman, Azhar Ariffin, Seik Weng Ng.   

Abstract

In the crystal structure of the title Schiff-base, C(20)H(21)N(3)O(4), the amino group forms an N-H⋯O hydrogen bond to the acetyl group of an adjacent mol-ecule, forming a zigzag chain. The 2-hydr-oxy group is inter-nally hydrogen bonded to the amido group though an O-H⋯O hydrogen bond.

Entities:  

Year:  2008        PMID: 21201799      PMCID: PMC2960481          DOI: 10.1107/S1600536808026846

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal uses of the precursor Schiff base, see: Jin et al. (2006 ▶); Joshi et al. (2008 ▶); Szczepankiewicz et al. (2001 ▶).

Experimental

Crystal data

C20H21N3O4 M = 367.40 Monoclinic, a = 11.0075 (3) Å b = 10.5197 (3) Å c = 15.4479 (4) Å β = 93.967 (2)° V = 1784.51 (8) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 (2) K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 16316 measured reflections 4072 independent reflections 2646 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.120 S = 1.02 4072 reflections 255 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026846/tk2298sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026846/tk2298Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N3O4F000 = 776
Mr = 367.40Dx = 1.367 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1739 reflections
a = 11.0075 (3) Åθ = 2.2–21.4º
b = 10.5197 (3) ŵ = 0.10 mm1
c = 15.4479 (4) ÅT = 100 (2) K
β = 93.967 (2)ºBlock, colorless
V = 1784.51 (8) Å30.20 × 0.15 × 0.10 mm
Z = 4
Bruker SMART APEX diffractometer2646 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.065
Monochromator: graphiteθmax = 27.5º
T = 100(2) Kθmin = 2.2º
ω scansh = −14→14
Absorption correction: Nonek = −13→13
16316 measured reflectionsl = −20→20
4072 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.120  w = 1/[σ2(Fo2) + (0.0466P)2 + 0.3679P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4072 reflectionsΔρmax = 0.26 e Å3
255 parametersΔρmin = −0.26 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.75833 (13)0.62701 (15)0.28349 (10)0.0328 (4)
H1O0.717 (2)0.5560 (16)0.2811 (18)0.069 (10)*
O20.57533 (11)0.47150 (13)0.28757 (9)0.0266 (3)
O30.27682 (12)0.25872 (13)0.22300 (9)0.0279 (3)
O40.41144 (11)0.35118 (13)0.43051 (8)0.0257 (3)
N10.38731 (14)0.55433 (15)0.29735 (10)0.0197 (4)
H1N0.3430 (17)0.6189 (15)0.3061 (14)0.037 (6)*
N20.33109 (13)0.43653 (14)0.29605 (10)0.0188 (3)
N30.12618 (13)0.52539 (15)0.40494 (10)0.0205 (4)
C10.68446 (17)0.7144 (2)0.31706 (12)0.0262 (5)
C20.73287 (19)0.8337 (2)0.33795 (14)0.0315 (5)
H20.81440.85300.32620.038*
C30.6634 (2)0.9230 (2)0.37533 (14)0.0354 (5)
H30.69721.00420.38920.042*
C40.54370 (19)0.8971 (2)0.39356 (13)0.0308 (5)
H40.49660.95920.42090.037*
C50.49478 (18)0.78036 (18)0.37132 (12)0.0249 (4)
H50.41320.76210.38370.030*
C60.56213 (17)0.68846 (18)0.33118 (12)0.0225 (4)
C70.51091 (17)0.56257 (18)0.30497 (11)0.0207 (4)
C80.31298 (16)0.36884 (19)0.22067 (12)0.0221 (4)
C90.33655 (19)0.4356 (2)0.13833 (13)0.0294 (5)
H9A0.30080.38670.08890.044*
H9B0.42460.44350.13370.044*
H9C0.29970.52040.13830.044*
C100.30451 (16)0.38509 (18)0.38166 (12)0.0212 (4)
H100.25040.30910.37360.025*
C110.24263 (16)0.48432 (18)0.43178 (12)0.0208 (4)
C120.28551 (17)0.55066 (18)0.50327 (12)0.0227 (4)
H120.36240.54000.53430.027*
C130.19310 (17)0.63891 (18)0.52267 (12)0.0222 (4)
C140.18300 (18)0.73351 (19)0.58605 (12)0.0261 (5)
H140.24740.74770.62910.031*
C150.07752 (18)0.8057 (2)0.58468 (13)0.0282 (5)
H150.07040.87080.62670.034*
C16−0.01854 (18)0.7841 (2)0.52232 (13)0.0295 (5)
H16−0.08990.83480.52300.035*
C17−0.01235 (17)0.6909 (2)0.45972 (13)0.0260 (5)
H17−0.07850.67540.41820.031*
C180.09490 (16)0.62076 (18)0.46006 (12)0.0220 (4)
C190.05096 (17)0.4838 (2)0.32897 (12)0.0269 (5)
H19A−0.03510.48720.34150.040*
H19B0.07260.39630.31440.040*
H19C0.06470.53970.27990.040*
C200.4677 (2)0.24041 (19)0.39780 (14)0.0313 (5)
H20A0.53950.21830.43580.047*
H20B0.49240.25740.33920.047*
H20C0.40970.16960.39600.047*
U11U22U33U12U13U23
O10.0245 (7)0.0335 (9)0.0408 (9)−0.0008 (7)0.0048 (6)0.0009 (7)
O20.0224 (7)0.0240 (8)0.0339 (8)0.0036 (6)0.0054 (6)−0.0027 (6)
O30.0311 (8)0.0184 (8)0.0342 (8)−0.0058 (6)0.0016 (6)−0.0067 (6)
O40.0282 (7)0.0211 (8)0.0272 (7)0.0051 (6)−0.0028 (6)−0.0001 (6)
N10.0201 (8)0.0107 (8)0.0284 (9)−0.0007 (7)0.0024 (7)−0.0012 (7)
N20.0219 (8)0.0112 (8)0.0235 (8)−0.0031 (6)0.0023 (6)−0.0011 (7)
N30.0213 (8)0.0190 (9)0.0213 (8)−0.0025 (7)0.0010 (6)−0.0028 (7)
C10.0270 (10)0.0277 (12)0.0236 (10)−0.0010 (9)−0.0011 (8)0.0057 (9)
C20.0291 (11)0.0302 (12)0.0345 (12)−0.0109 (10)−0.0027 (9)0.0081 (10)
C30.0452 (13)0.0230 (12)0.0364 (12)−0.0101 (10)−0.0088 (10)0.0048 (10)
C40.0420 (13)0.0197 (11)0.0297 (11)−0.0021 (9)−0.0028 (10)−0.0017 (9)
C50.0296 (10)0.0209 (11)0.0239 (10)−0.0027 (9)−0.0014 (8)0.0013 (9)
C60.0252 (10)0.0184 (10)0.0236 (10)−0.0025 (8)0.0000 (8)0.0049 (8)
C70.0243 (10)0.0205 (10)0.0172 (9)−0.0013 (8)0.0020 (7)0.0030 (8)
C80.0194 (9)0.0207 (11)0.0259 (10)0.0033 (8)0.0002 (8)−0.0026 (8)
C90.0338 (11)0.0306 (12)0.0241 (10)−0.0007 (10)0.0028 (9)−0.0032 (9)
C100.0228 (9)0.0176 (10)0.0232 (10)−0.0010 (8)0.0007 (8)0.0005 (8)
C110.0222 (9)0.0175 (10)0.0228 (9)−0.0016 (8)0.0022 (8)0.0017 (8)
C120.0238 (10)0.0231 (11)0.0213 (9)0.0003 (8)0.0008 (8)0.0007 (8)
C130.0251 (10)0.0199 (10)0.0218 (10)−0.0024 (8)0.0036 (8)0.0030 (8)
C140.0304 (11)0.0268 (12)0.0216 (10)−0.0033 (9)0.0043 (8)−0.0024 (9)
C150.0356 (11)0.0238 (11)0.0263 (10)0.0006 (9)0.0090 (9)−0.0047 (9)
C160.0282 (11)0.0289 (12)0.0326 (11)0.0042 (9)0.0101 (9)0.0009 (10)
C170.0229 (10)0.0266 (11)0.0286 (11)−0.0011 (8)0.0036 (8)0.0012 (9)
C180.0236 (9)0.0193 (10)0.0236 (10)−0.0040 (8)0.0059 (8)0.0000 (8)
C190.0247 (10)0.0279 (12)0.0274 (11)−0.0023 (9)−0.0028 (8)−0.0050 (9)
C200.0367 (12)0.0185 (11)0.0378 (12)0.0085 (9)−0.0026 (10)0.0007 (9)
O1—C11.354 (2)C8—C91.491 (3)
O1—H1O0.871 (10)C9—H9A0.9800
O2—C71.233 (2)C9—H9B0.9800
O3—C81.226 (2)C9—H9C0.9800
O4—C101.400 (2)C10—C111.492 (3)
O4—C201.428 (2)C10—H101.0000
N1—C71.360 (2)C11—C121.363 (3)
N1—N21.385 (2)C12—C131.424 (3)
N1—H1N0.852 (9)C12—H120.9500
N2—C81.368 (2)C13—C141.406 (3)
N2—C101.477 (2)C13—C181.413 (3)
N3—C181.375 (2)C14—C151.387 (3)
N3—C111.389 (2)C14—H140.9500
N3—C191.456 (2)C15—C161.399 (3)
C1—C21.393 (3)C15—H150.9500
C1—C61.406 (3)C16—C171.382 (3)
C2—C31.365 (3)C16—H160.9500
C2—H20.9500C17—C181.392 (3)
C3—C41.393 (3)C17—H170.9500
C3—H30.9500C19—H19A0.9800
C4—C51.375 (3)C19—H19B0.9800
C4—H40.9500C19—H19C0.9800
C5—C61.390 (3)C20—H20A0.9800
C5—H50.9500C20—H20B0.9800
C6—C71.485 (3)C20—H20C0.9800
C1—O1—H1O106.0 (19)O4—C10—C11107.19 (14)
C10—O4—C20112.71 (14)N2—C10—C11109.52 (15)
C7—N1—N2120.11 (16)O4—C10—H10109.6
C7—N1—H1N121.0 (15)N2—C10—H10109.6
N2—N1—H1N117.1 (15)C11—C10—H10109.6
C8—N2—N1121.13 (15)C12—C11—N3110.09 (17)
C8—N2—C10123.05 (15)C12—C11—C10129.33 (17)
N1—N2—C10115.52 (14)N3—C11—C10120.52 (16)
C18—N3—C11107.92 (15)C11—C12—C13106.97 (16)
C18—N3—C19124.45 (16)C11—C12—H12126.5
C11—N3—C19127.50 (16)C13—C12—H12126.5
O1—C1—C2118.06 (18)C14—C13—C18118.61 (18)
O1—C1—C6122.32 (18)C14—C13—C12134.43 (18)
C2—C1—C6119.6 (2)C18—C13—C12106.95 (17)
C3—C2—C1120.1 (2)C15—C14—C13118.93 (18)
C3—C2—H2119.9C15—C14—H14120.5
C1—C2—H2119.9C13—C14—H14120.5
C2—C3—C4121.1 (2)C14—C15—C16120.91 (19)
C2—C3—H3119.4C14—C15—H15119.5
C4—C3—H3119.4C16—C15—H15119.5
C5—C4—C3118.9 (2)C17—C16—C15121.71 (19)
C5—C4—H4120.5C17—C16—H16119.1
C3—C4—H4120.5C15—C16—H16119.1
C4—C5—C6121.40 (19)C16—C17—C18117.16 (18)
C4—C5—H5119.3C16—C17—H17121.4
C6—C5—H5119.3C18—C17—H17121.4
C5—C6—C1118.71 (18)N3—C18—C17129.29 (17)
C5—C6—C7122.54 (17)N3—C18—C13108.07 (16)
C1—C6—C7118.73 (18)C17—C18—C13122.64 (18)
O2—C7—N1121.25 (17)N3—C19—H19A109.5
O2—C7—C6122.64 (17)N3—C19—H19B109.5
N1—C7—C6116.05 (17)H19A—C19—H19B109.5
O3—C8—N2119.69 (18)N3—C19—H19C109.5
O3—C8—C9123.09 (18)H19A—C19—H19C109.5
N2—C8—C9117.21 (17)H19B—C19—H19C109.5
C8—C9—H9A109.5O4—C20—H20A109.5
C8—C9—H9B109.5O4—C20—H20B109.5
H9A—C9—H9B109.5H20A—C20—H20B109.5
C8—C9—H9C109.5O4—C20—H20C109.5
H9A—C9—H9C109.5H20A—C20—H20C109.5
H9B—C9—H9C109.5H20B—C20—H20C109.5
O4—C10—N2111.40 (15)
C7—N1—N2—C8−84.8 (2)N1—N2—C10—C1148.99 (19)
C7—N1—N2—C1089.2 (2)C18—N3—C11—C120.6 (2)
O1—C1—C2—C3−177.23 (18)C19—N3—C11—C12176.65 (18)
C6—C1—C2—C32.8 (3)C18—N3—C11—C10−176.91 (16)
C1—C2—C3—C40.2 (3)C19—N3—C11—C10−0.9 (3)
C2—C3—C4—C5−1.6 (3)O4—C10—C11—C1211.2 (3)
C3—C4—C5—C6−0.1 (3)N2—C10—C11—C12−109.8 (2)
C4—C5—C6—C13.0 (3)O4—C10—C11—N3−171.84 (16)
C4—C5—C6—C7−178.81 (18)N2—C10—C11—N367.2 (2)
O1—C1—C6—C5175.68 (17)N3—C11—C12—C13−0.6 (2)
C2—C1—C6—C5−4.3 (3)C10—C11—C12—C13176.68 (18)
O1—C1—C6—C7−2.6 (3)C11—C12—C13—C14−178.7 (2)
C2—C1—C6—C7177.42 (17)C11—C12—C13—C180.3 (2)
N2—N1—C7—O219.8 (3)C18—C13—C14—C15−0.2 (3)
N2—N1—C7—C6−162.92 (15)C12—C13—C14—C15178.6 (2)
C5—C6—C7—O2−163.41 (18)C13—C14—C15—C161.0 (3)
C1—C6—C7—O214.8 (3)C14—C15—C16—C17−0.2 (3)
C5—C6—C7—N119.4 (3)C15—C16—C17—C18−1.3 (3)
C1—C6—C7—N1−162.41 (17)C11—N3—C18—C17−179.76 (19)
N1—N2—C8—O3171.07 (16)C19—N3—C18—C174.0 (3)
C10—N2—C8—O3−2.5 (3)C11—N3—C18—C13−0.4 (2)
N1—N2—C8—C9−10.1 (2)C19—N3—C18—C13−176.59 (17)
C10—N2—C8—C9176.32 (16)C16—C17—C18—N3−178.60 (19)
C20—O4—C10—N2−71.2 (2)C16—C17—C18—C132.1 (3)
C20—O4—C10—C11168.97 (15)C14—C13—C18—N3179.21 (16)
C8—N2—C10—O4104.46 (19)C12—C13—C18—N30.1 (2)
N1—N2—C10—O4−69.42 (19)C14—C13—C18—C17−1.4 (3)
C8—N2—C10—C11−137.13 (17)C12—C13—C18—C17179.47 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1o···O20.87 (1)1.81 (2)2.599 (2)150 (3)
N1—H1n···O3i0.85 (1)2.01 (1)2.812 (2)157 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯O20.87 (1)1.81 (2)2.599 (2)150 (3)
N1—H1n⋯O3i0.85 (1)2.01 (1)2.812 (2)157 (2)

Symmetry code: (i) .

  3 in total

1.  Synthesis, structure, and bioactivity of N'-substituted benzylidene-3,4,5-trimethoxybenzohydrazide and 3-acetyl-2-substituted phenyl-5-(3,4,5-trimethoxyphenyl)-2,3-dihydro-1,3,4-oxadiazole derivatives.

Authors:  Linhong Jin; Jiang Chen; Baoan Song; Zhuo Chen; Song Yang; Qianzhu Li; Deyu Hu; Ruiqing Xu
Journal:  Bioorg Med Chem Lett       Date:  2006-07-28       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  New antimitotic agents with activity in multi-drug-resistant cell lines and in vivo efficacy in murine tumor models.

Authors:  B G Szczepankiewicz; G Liu; H S Jae; A S Tasker; I W Gunawardana; T W von Geldern; S L Gwaltney; J R Wu-Wong; L Gehrke; W J Chiou; R B Credo; J D Alder; M A Nukkala; N A Zielinski; K Jarvis; K W Mollison; D J Frost; J L Bauch; Y H Hui; A K Claiborne; Q Li; S H Rosenberg
Journal:  J Med Chem       Date:  2001-12-06       Impact factor: 7.446

  3 in total
  11 in total

1.  (E)-4-Hydr-oxy-N'-(4-nitro-benzyl-idene)benzohydrazide.

Authors:  Cong-Ming Li; Hong-Yan Ban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

2.  (E)-N'-(5-Bromo-2-methoxy-benzyl-idene)-3-methoxy-benzohydrazide.

Authors:  Cong-Ming Li; Hong-Yan Ban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

3.  (E)-N'-(5-Bromo-2-methoxy-benzyl-idene)-4-methoxy-benzohydrazide.

Authors:  Hong-Yan Ban; Cong-Ming Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

4.  (E)-2-Meth-oxy-N'-(4-nitro-benzyl-idene)benzohydrazide.

Authors:  Hong-Yan Ban; Cong-Ming Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

5.  (E)-N'-(2-Chloro-5-nitro-benzyl-idene)-4-methoxy-benzohydrazide.

Authors:  Hong-Yan Ban; Cong-Ming Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-25

6.  N'-(3-Bromo-5-chloro-2-hy-droxy-benzyl-idene)-2H-1,3-benzodioxole-5-carbo-hydrazide.

Authors:  Jiao Wei; Hong-Yan Ban; Xiao-Zhi Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-06

7.  (E)-4-Meth-oxy-N'-(4-nitro-benzyl-idene)benzohydrazide methanol monosolvate.

Authors:  Hong-Yan Ban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20

8.  (E)-N'-(4-Hydroxy-benzyl-idene)-4-hydroxy-benzohydrazide methanol solvate.

Authors:  Cong-Ming Li; Hong-Yan Ban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

9.  (E)-N'-[1-(2-Hydroxy-phen-yl)ethyl-idene]-3-methoxy-benzohydrazide.

Authors:  Cong-Ming Li; Hong-Yan Ban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

10.  (E)-2-Fluoro-N'-(4-nitro-benzyl-idene)benzo-hydrazide.

Authors:  Hong-Yun Wu; Hong-Yan Ban; Jia-Bo Wang; Li-Hua Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18
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