Literature DB >> 21201693

5H-1-Benzothio-pyrano[2,3-b]pyridin-5-one.

Muhammad Naeem Khan, M Nawaz Tahir, Misbahul Ain Khan, Islam Ullah Khan, Muhammad Nadeem Arshad.   

Abstract

Mol-ecules of the title compound, C(12)H(7)NOS, with one half-mol-ecule in the asymmetric unit, are disordered about a crystallographic centre of inversion. Refinement showed that the C=O group is disordered with the S atom and the N atom is disordered over four positions. Adjacent mol-ecules are connected through C-H⋯O hydrogen bonds and π⋯π inter-actions (centroid-centroid distances of 3.635 and 3.858 Å).

Entities:  

Year:  2008        PMID: 21201693      PMCID: PMC2960694          DOI: 10.1107/S1600536808024628

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Hidetoshi (1997 ▶); Khan et al. (2008 ▶); Mann & Reid (1952 ▶).

Experimental

Crystal data

C12H7NOS M = 213.26 Monoclinic, a = 7.7308 (18) Å b = 3.8585 (9) Å c = 15.771 (3) Å β = 99.333 (9)° V = 464.20 (18) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 296 (2) K 0.25 × 0.06 × 0.04 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.977, T max = 0.987 5384 measured reflections 1189 independent reflections 822 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.179 S = 1.17 1189 reflections 83 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024628/bt2756sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024628/bt2756Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H7NOSF000 = 220
Mr = 213.26Dx = 1.525 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1189 reflections
a = 7.7308 (18) Åθ = 2.6–28.7º
b = 3.8585 (9) ŵ = 0.31 mm1
c = 15.771 (3) ÅT = 296 (2) K
β = 99.333 (9)ºNeedle, light yellow
V = 464.20 (18) Å30.25 × 0.06 × 0.04 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer1189 independent reflections
Radiation source: fine-focus sealed tube822 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
Detector resolution: 7.5 pixels mm-1θmax = 28.7º
T = 296(2) Kθmin = 2.6º
ω scansh = −10→10
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −5→3
Tmin = 0.977, Tmax = 0.987l = −21→21
5384 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.070H-atom parameters constrained
wR(F2) = 0.179  w = 1/[σ2(Fo2) + (0.064P)2 + 0.435P] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
1189 reflectionsΔρmax = 0.62 e Å3
83 parametersΔρmin = −0.26 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C60.3852 (15)0.001 (3)0.0576 (7)0.044 (2)0.50
O10.2856 (9)−0.006 (2)0.1093 (4)0.083 (3)0.50
C3B0.1527 (4)−0.2668 (8)−0.05322 (19)0.0508 (7)0.75
H3B0.0739−0.2649−0.01450.061*0.75
N1B0.3839 (4)−0.2689 (8)−0.17028 (19)0.0530 (8)0.25
S10.6613 (4)−0.0009 (10)−0.08029 (19)0.0481 (6)0.50
C3A0.3839 (4)−0.2689 (8)−0.17028 (19)0.0530 (8)0.75
H3A0.4605−0.2676−0.21000.064*0.75
N1A0.1527 (4)−0.2668 (8)−0.05322 (19)0.0508 (7)0.25
C10.4368 (4)−0.1412 (8)−0.08724 (19)0.0444 (7)
C20.3204 (4)−0.1406 (8)−0.02885 (17)0.0437 (7)
C40.1027 (4)−0.3937 (9)−0.1335 (2)0.0577 (9)
H4−0.0102−0.4803−0.14950.069*
C50.2178 (5)−0.3955 (9)−0.1919 (2)0.0570 (9)
H50.1816−0.4842−0.24670.068*
U11U22U33U12U13U23
C60.045 (6)0.038 (3)0.047 (6)0.002 (4)0.002 (3)0.008 (4)
O10.073 (4)0.134 (6)0.053 (4)−0.023 (4)0.047 (3)−0.015 (4)
C3B0.0496 (16)0.0468 (16)0.0563 (17)−0.0002 (13)0.0099 (13)0.0016 (13)
N1B0.0632 (19)0.0482 (17)0.0476 (15)0.0023 (14)0.0090 (13)−0.0010 (13)
S10.0438 (17)0.0620 (11)0.0411 (16)−0.0040 (13)0.0145 (8)−0.0032 (13)
C3A0.0632 (19)0.0482 (17)0.0476 (15)0.0023 (14)0.0090 (13)−0.0010 (13)
N1A0.0496 (16)0.0468 (16)0.0563 (17)−0.0002 (13)0.0099 (13)0.0016 (13)
C10.0434 (14)0.0371 (14)0.0512 (16)0.0028 (12)0.0031 (12)0.0058 (12)
C20.0522 (16)0.0361 (14)0.0420 (14)0.0059 (12)0.0049 (12)0.0037 (11)
C40.0501 (18)0.0507 (19)0.066 (2)−0.0058 (14)−0.0082 (15)0.0034 (15)
C50.069 (2)0.0495 (18)0.0474 (17)0.0000 (16)−0.0075 (15)−0.0048 (14)
C6—O11.209 (9)S1—C2i1.791 (4)
C6—C21.480 (13)S1—C11.803 (4)
C6—C1i1.481 (13)C1—C21.388 (4)
C3B—C41.355 (4)C1—C6i1.481 (13)
C3B—C21.380 (4)C2—S1i1.791 (4)
C3B—H3B0.9300C4—C51.380 (5)
N1B—C51.364 (5)C4—H40.9300
N1B—C11.398 (4)C5—H50.9300
O1—C6—C2117.2 (11)C6i—C1—S115.5 (4)
O1—C6—C1i117.1 (11)C3B—C2—C1119.7 (3)
C2—C6—C1i125.7 (7)C3B—C2—C6123.3 (5)
C4—C3B—C2120.0 (3)C1—C2—C6117.0 (5)
C4—C3B—H3B120.0C3B—C2—S1i107.4 (2)
C2—C3B—H3B120.0C1—C2—S1i132.9 (3)
C5—N1B—C1118.7 (3)C6—C2—S1i15.9 (4)
C2i—S1—C194.30 (18)C3B—C4—C5120.6 (3)
C2—C1—N1B120.0 (3)C3B—C4—H4119.7
C2—C1—C6i117.3 (5)C5—C4—H4119.7
N1B—C1—C6i122.7 (5)N1B—C5—C4120.9 (3)
C2—C1—S1132.8 (3)N1B—C5—H5119.6
N1B—C1—S1107.2 (2)C4—C5—H5119.6
C5—N1B—C1—C2−0.8 (5)S1—C1—C2—C60.2 (6)
C5—N1B—C1—C6i179.5 (6)N1B—C1—C2—S1i−179.5 (3)
C5—N1B—C1—S1179.4 (3)C6i—C1—C2—S1i0.2 (6)
C2i—S1—C1—C2−0.2 (4)S1—C1—C2—S1i0.2 (6)
C2i—S1—C1—N1B179.6 (2)O1—C6—C2—C3B2.2 (15)
C2i—S1—C1—C6i0(2)C1i—C6—C2—C3B−179.7 (7)
C4—C3B—C2—C10.6 (5)O1—C6—C2—C1−178.2 (10)
C4—C3B—C2—C6−179.8 (6)C1i—C6—C2—C1−0.1 (12)
C4—C3B—C2—S1i−179.7 (3)O1—C6—C2—S1i2.0 (11)
N1B—C1—C2—C3B0.1 (4)C1i—C6—C2—S1i−180 (3)
C6i—C1—C2—C3B179.7 (6)C2—C3B—C4—C5−0.5 (5)
S1—C1—C2—C3B179.8 (3)C1—N1B—C5—C40.9 (5)
N1B—C1—C2—C6−179.6 (6)C3B—C4—C5—N1B−0.2 (5)
C6i—C1—C2—C60.1 (11)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1ii0.932.533.286 (7)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.932.533.286 (7)139

Symmetry code: (i) .

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