Literature DB >> 21578273

2-(Phenyl-sulfan-yl)pyridine-3-carboxylic acid.

Muhammad Naeem Khan, Misbahul Ain Khan, Muhammad Nadeem Arshad, Islam Ullah Khan, Salma Rehman.   

Abstract

The title compound, C(12)H(9)NO(2)S, belongs to the nitro-gen-containing group of heterocyclic organic compounds and crystallized with two mol-ecules per asymmetric unit. In the crystal, both molecules form inversion dimers linked by pairs of O-H-O hydrogen bonds. Weak symmetry-related C-H-O inter-actions link the carboxyl dimers along b axis. The dihedral angle between the two aromatic rings in the two mol-ecules are 55.75 (14) and 58.33 (13)°.

Entities:  

Year:  2009        PMID: 21578273      PMCID: PMC2971425          DOI: 10.1107/S1600536809038586

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological effects of heteroaromatic anti­tumor compounds: Denny et al. (1982 ▶); Fujiwara (1997 ▶); Antonini & Martelli (1992 ▶); Cholody et al. (1992 ▶). For the title compound as an inter­mediate for heterocycles, see: Khan et al. (2008a ▶,b ▶). For the synthesis, see: Mann & Reid (1952 ▶).

Experimental

Crystal data

C12H9NO2S M = 231.26 Triclinic, a = 7.2201 (4) Å b = 7.6653 (4) Å c = 19.9537 (11) Å α = 97.895 (3)° β = 98.520 (3)° γ = 91.661 (3)° V = 1080.41 (10) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 K 0.21 × 0.09 × 0.06 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.911, T max = 0.983 23200 measured reflections 5397 independent reflections 2766 reflections with I > 2/s(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.224 S = 1.09 5397 reflections 292 parameters H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.53 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809038586/hg2570sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038586/hg2570Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9NO2SZ = 4
Mr = 231.26F(000) = 480
Triclinic, P1Dx = 1.422 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2201 (4) ÅCell parameters from 3133 reflections
b = 7.6653 (4) Åθ = 2.9–23.8°
c = 19.9537 (11) ŵ = 0.28 mm1
α = 97.895 (3)°T = 296 K
β = 98.520 (3)°Needle, white
γ = 91.661 (3)°0.21 × 0.09 × 0.06 mm
V = 1080.41 (10) Å3
Bruker Kappa APEXII CCD diffractometer5397 independent reflections
Radiation source: fine-focus sealed tube2766 reflections with I > 2/s(I)
graphiteRint = 0.063
φ and ω scansθmax = 28.4°, θmin = 1.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.911, Tmax = 0.983k = −10→10
23200 measured reflectionsl = −26→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.073H-atom parameters constrained
wR(F2) = 0.224w = 1/[σ2(Fo2) + (0.1023P)2 + 0.1581P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
5397 reflectionsΔρmax = 0.59 e Å3
292 parametersΔρmin = −0.52 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.045 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.15013 (14)−0.12613 (12)0.21464 (5)0.0407 (3)
S20.70162 (15)0.36894 (12)0.22267 (5)0.0447 (3)
O10.1649 (4)−0.2094 (3)0.07364 (13)0.0508 (7)
O20.2377 (6)−0.0151 (4)0.00790 (14)0.0709 (10)
H20.2653−0.1043−0.01550.106*
O30.7077 (5)0.2844 (3)0.08218 (13)0.0568 (8)
O40.7667 (5)0.4795 (4)0.01516 (15)0.0689 (10)
H4O0.79580.3911−0.00830.103*
N10.1813 (5)0.2239 (4)0.23401 (15)0.0422 (8)
N20.6430 (4)0.7119 (4)0.23511 (15)0.0414 (8)
C10.1727 (5)0.0818 (4)0.18659 (17)0.0341 (8)
C20.1832 (5)0.0971 (5)0.11768 (18)0.0382 (8)
C30.1939 (6)0.2639 (5)0.1002 (2)0.0496 (10)
H30.20050.27830.05510.059*
C40.1951 (6)0.4099 (5)0.1488 (2)0.0521 (11)
H40.19780.52340.13720.062*
C50.1921 (6)0.3809 (5)0.2150 (2)0.0485 (10)
H50.19810.47870.24860.058*
C60.1937 (6)−0.0559 (5)0.06520 (18)0.0413 (9)
C70.1766 (5)−0.0719 (5)0.30494 (18)0.0380 (8)
C80.3176 (6)−0.1484 (5)0.34292 (19)0.0490 (10)
H80.4002−0.21900.32140.059*
C90.3357 (7)−0.1189 (7)0.4143 (2)0.0656 (13)
H90.4306−0.17090.44030.079*
C100.2159 (8)−0.0149 (7)0.4461 (2)0.0738 (15)
H100.22900.00480.49360.089*
C110.0762 (7)0.0605 (6)0.4077 (2)0.0665 (14)
H11−0.00530.13200.42950.080*
C120.0542 (6)0.0326 (5)0.3379 (2)0.0509 (10)
H12−0.04260.08360.31250.061*
C130.6743 (5)0.5728 (5)0.19104 (18)0.0357 (8)
C140.6895 (5)0.5891 (5)0.12249 (18)0.0373 (8)
C150.6724 (6)0.7539 (5)0.1026 (2)0.0457 (10)
H150.68180.76860.05770.055*
C160.6416 (6)0.8959 (5)0.1483 (2)0.0463 (10)
H160.63171.00810.13580.056*
C170.6261 (5)0.8659 (5)0.2134 (2)0.0442 (9)
H170.60170.96120.24440.053*
C180.7230 (6)0.4371 (5)0.07237 (18)0.0416 (9)
C190.7107 (5)0.4283 (5)0.31237 (18)0.0380 (8)
C200.5879 (6)0.3405 (6)0.3442 (2)0.0492 (10)
H200.49680.26040.31840.059*
C210.5999 (7)0.3716 (7)0.4149 (2)0.0658 (13)
H210.51610.31280.43630.079*
C220.7329 (8)0.4871 (7)0.4529 (2)0.0717 (14)
H220.74150.50660.50040.086*
C230.8545 (7)0.5748 (6)0.4213 (2)0.0683 (14)
H230.94450.65520.44760.082*
C240.8463 (6)0.5467 (6)0.3516 (2)0.0528 (11)
H240.93080.60640.33080.063*
U11U22U33U12U13U23
S10.0630 (7)0.0289 (5)0.0303 (5)0.0032 (4)0.0088 (4)0.0027 (4)
S20.0728 (7)0.0313 (5)0.0326 (5)0.0075 (5)0.0147 (5)0.0060 (4)
O10.092 (2)0.0293 (15)0.0329 (15)0.0027 (13)0.0166 (14)0.0041 (12)
O20.148 (3)0.0337 (16)0.0387 (17)0.0088 (18)0.0413 (19)0.0042 (13)
O30.111 (2)0.0291 (15)0.0366 (16)0.0060 (14)0.0284 (15)0.0063 (12)
O40.137 (3)0.0358 (16)0.0428 (18)0.0118 (18)0.0420 (19)0.0057 (13)
N10.062 (2)0.0298 (17)0.0348 (18)0.0000 (14)0.0090 (15)0.0022 (14)
N20.056 (2)0.0325 (17)0.0378 (18)0.0111 (14)0.0137 (15)0.0047 (14)
C10.041 (2)0.0320 (19)0.0291 (19)0.0071 (15)0.0034 (15)0.0037 (15)
C20.054 (2)0.0300 (19)0.0309 (19)0.0066 (16)0.0075 (16)0.0034 (15)
C30.078 (3)0.034 (2)0.040 (2)0.0069 (19)0.016 (2)0.0065 (18)
C40.084 (3)0.028 (2)0.048 (3)0.0085 (19)0.016 (2)0.0099 (18)
C50.068 (3)0.029 (2)0.046 (2)0.0008 (18)0.013 (2)−0.0059 (18)
C60.065 (3)0.032 (2)0.029 (2)0.0089 (17)0.0106 (17)0.0056 (16)
C70.053 (2)0.0293 (19)0.031 (2)−0.0026 (16)0.0100 (17)0.0019 (15)
C80.063 (3)0.048 (2)0.038 (2)0.005 (2)0.0113 (19)0.0104 (19)
C90.077 (3)0.080 (3)0.041 (3)−0.003 (3)0.003 (2)0.021 (2)
C100.101 (4)0.087 (4)0.032 (2)−0.020 (3)0.020 (3)0.000 (3)
C110.087 (4)0.060 (3)0.054 (3)−0.001 (3)0.035 (3)−0.010 (2)
C120.063 (3)0.048 (2)0.045 (2)0.004 (2)0.020 (2)0.0043 (19)
C130.044 (2)0.0323 (19)0.0295 (19)0.0029 (15)0.0065 (15)0.0008 (15)
C140.052 (2)0.0310 (19)0.0305 (19)0.0016 (16)0.0122 (16)0.0042 (15)
C150.067 (3)0.032 (2)0.041 (2)0.0050 (18)0.0151 (19)0.0080 (17)
C160.064 (3)0.032 (2)0.048 (2)0.0099 (18)0.016 (2)0.0126 (18)
C170.060 (2)0.030 (2)0.043 (2)0.0088 (17)0.0143 (18)−0.0001 (17)
C180.063 (3)0.032 (2)0.032 (2)0.0039 (17)0.0154 (18)0.0047 (17)
C190.052 (2)0.033 (2)0.0301 (19)0.0079 (16)0.0102 (16)0.0056 (16)
C200.056 (3)0.053 (3)0.039 (2)−0.001 (2)0.0074 (19)0.0115 (19)
C210.074 (3)0.087 (4)0.044 (3)0.006 (3)0.023 (2)0.024 (3)
C220.093 (4)0.090 (4)0.033 (2)0.012 (3)0.014 (3)0.005 (3)
C230.079 (3)0.072 (3)0.046 (3)0.004 (3)−0.008 (2)0.001 (2)
C240.064 (3)0.053 (3)0.042 (2)−0.004 (2)0.009 (2)0.009 (2)
S1—C11.771 (4)C9—C101.360 (7)
S1—C71.773 (4)C9—H90.9300
S2—C131.769 (4)C10—C111.365 (7)
S2—C191.776 (4)C10—H100.9300
O1—C61.228 (4)C11—C121.365 (6)
O2—C61.306 (4)C11—H110.9300
O2—H20.8200C12—H120.9300
O3—C181.218 (4)C13—C141.411 (5)
O4—C181.308 (4)C14—C151.379 (5)
O4—H4O0.8200C14—C181.478 (5)
N1—C51.315 (5)C15—C161.367 (5)
N1—C11.334 (4)C15—H150.9300
N2—C171.315 (5)C16—C171.369 (5)
N2—C131.333 (4)C16—H160.9300
C1—C21.409 (5)C17—H170.9300
C2—C31.374 (5)C19—C201.376 (5)
C2—C61.472 (5)C19—C241.386 (5)
C3—C41.374 (5)C20—C211.386 (5)
C3—H30.9300C20—H200.9300
C4—C51.372 (5)C21—C221.354 (7)
C4—H40.9300C21—H210.9300
C5—H50.9300C22—C231.366 (7)
C7—C81.372 (5)C22—H220.9300
C7—C121.387 (5)C23—C241.371 (6)
C8—C91.397 (5)C23—H230.9300
C8—H80.9300C24—H240.9300
C1—S1—C7103.18 (16)C11—C12—C7119.9 (4)
C13—S2—C19103.20 (16)C11—C12—H12120.1
C6—O2—H2109.5C7—C12—H12120.1
C18—O4—H4O109.5N2—C13—C14121.1 (3)
C5—N1—C1118.8 (3)N2—C13—S2117.3 (3)
C17—N2—C13118.6 (3)C14—C13—S2121.6 (3)
N1—C1—C2121.4 (3)C15—C14—C13117.9 (3)
N1—C1—S1116.8 (3)C15—C14—C18119.8 (3)
C2—C1—S1121.8 (3)C13—C14—C18122.3 (3)
C3—C2—C1117.6 (3)C16—C15—C14120.5 (4)
C3—C2—C6119.1 (3)C16—C15—H15119.8
C1—C2—C6123.1 (3)C14—C15—H15119.8
C2—C3—C4120.7 (4)C15—C16—C17117.2 (3)
C2—C3—H3119.6C15—C16—H16121.4
C4—C3—H3119.6C17—C16—H16121.4
C5—C4—C3117.1 (4)N2—C17—C16124.7 (3)
C5—C4—H4121.5N2—C17—H17117.6
C3—C4—H4121.5C16—C17—H17117.6
N1—C5—C4124.3 (3)O3—C18—O4122.1 (3)
N1—C5—H5117.8O3—C18—C14123.5 (3)
C4—C5—H5117.8O4—C18—C14114.3 (3)
O1—C6—O2121.9 (3)C20—C19—C24119.4 (4)
O1—C6—C2123.8 (3)C20—C19—S2117.8 (3)
O2—C6—C2114.2 (3)C24—C19—S2122.5 (3)
C8—C7—C12119.6 (4)C19—C20—C21120.0 (4)
C8—C7—S1117.3 (3)C19—C20—H20120.0
C12—C7—S1122.9 (3)C21—C20—H20120.0
C7—C8—C9119.3 (4)C22—C21—C20120.4 (4)
C7—C8—H8120.3C22—C21—H21119.8
C9—C8—H8120.3C20—C21—H21119.8
C10—C9—C8120.6 (5)C21—C22—C23119.7 (4)
C10—C9—H9119.7C21—C22—H22120.2
C8—C9—H9119.7C23—C22—H22120.2
C9—C10—C11119.6 (4)C22—C23—C24121.3 (4)
C9—C10—H10120.2C22—C23—H23119.3
C11—C10—H10120.2C24—C23—H23119.3
C10—C11—C12121.1 (4)C23—C24—C19119.3 (4)
C10—C11—H11119.5C23—C24—H24120.4
C12—C11—H11119.5C19—C24—H24120.4
C5—N1—C1—C22.8 (5)C17—N2—C13—C140.1 (5)
C5—N1—C1—S1−177.9 (3)C17—N2—C13—S2178.6 (3)
C7—S1—C1—N1−7.2 (3)C19—S2—C13—N2−8.3 (3)
C7—S1—C1—C2172.1 (3)C19—S2—C13—C14170.2 (3)
N1—C1—C2—C3−2.9 (6)N2—C13—C14—C150.4 (6)
S1—C1—C2—C3177.8 (3)S2—C13—C14—C15−177.9 (3)
N1—C1—C2—C6173.5 (3)N2—C13—C14—C18−179.6 (3)
S1—C1—C2—C6−5.8 (5)S2—C13—C14—C182.0 (5)
C1—C2—C3—C40.2 (6)C13—C14—C15—C160.0 (6)
C6—C2—C3—C4−176.3 (4)C18—C14—C15—C16−179.9 (4)
C2—C3—C4—C52.4 (6)C14—C15—C16—C17−1.0 (6)
C1—N1—C5—C40.1 (6)C13—N2—C17—C16−1.3 (6)
C3—C4—C5—N1−2.6 (7)C15—C16—C17—N21.7 (6)
C3—C2—C6—O1−171.7 (4)C15—C14—C18—O3−166.9 (4)
C1—C2—C6—O112.0 (6)C13—C14—C18—O313.2 (6)
C3—C2—C6—O28.6 (6)C15—C14—C18—O411.6 (6)
C1—C2—C6—O2−167.8 (4)C13—C14—C18—O4−168.3 (4)
C1—S1—C7—C8−122.4 (3)C13—S2—C19—C20126.3 (3)
C1—S1—C7—C1262.3 (4)C13—S2—C19—C24−59.6 (4)
C12—C7—C8—C9−0.2 (6)C24—C19—C20—C210.3 (6)
S1—C7—C8—C9−175.7 (3)S2—C19—C20—C21174.6 (3)
C7—C8—C9—C10−0.3 (7)C19—C20—C21—C22−0.5 (7)
C8—C9—C10—C110.3 (8)C20—C21—C22—C230.7 (8)
C9—C10—C11—C120.3 (8)C21—C22—C23—C24−0.8 (8)
C10—C11—C12—C7−0.8 (7)C22—C23—C24—C190.7 (7)
C8—C7—C12—C110.8 (6)C20—C19—C24—C23−0.4 (6)
S1—C7—C12—C11176.0 (3)S2—C19—C24—C23−174.4 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.821.822.624 (2)168 (1)
O4—H4o···O1i0.8201.830002.642 (2)169.62 (19)
C3—H3···O4ii0.932.503.264 (5)139
C4—H4···O1iii0.932.553.458 (5)164
C15—H15···O2ii0.932.543.294 (5)138
C16—H16···O3iii0.932.583.467 (5)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.821.822.624 (2)167 (1)
O4—H4o⋯O1i0.821.832.642 (2)170 (1)
C3—H3⋯O4ii0.932.503.264 (5)139
C4—H4⋯O1iii0.932.553.458 (5)164
C15—H15⋯O2ii0.932.543.294 (5)138
C16—H16⋯O3iii0.932.583.467 (5)160

Symmetry codes: (i) ; (ii) ; (iii) .

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