Literature DB >> 21754742

Diethyl 2-{[(5-oxo-5H-thio-chromeno[2,3-b]pyridin-7-yl)amino]-methyl-idene}propane-dioate.

Muhammad Naeem Khan, M Nawaz Tahir, Misbahul Ain Khan, Munawar Ali Munawar, Abdul Qayyum Ather.   

Abstract

In the title compound, C(15)H(14)O(2)S, the three fused rings are roughly coplanar, the largest deviation from the mean plane being 0.1285 (13) Å for the S atom. An intra-molecular N-H⋯O hydrogen bond generates an S6 ring. In the crystal, inter-molecular C-H⋯O hydrogen bonds form R(2) (2)(14), R(2) (2)(13) and R(3) (2)(17) ring motifs, building a layer parallel to (100).

Entities:  

Year:  2011        PMID: 21754742      PMCID: PMC3120616          DOI: 10.1107/S1600536811016291

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Khan et al. (2008 ▶); Lokaj et al. (1994 ▶); Lynch & McClenaghan (2003 ▶); For graph-set notation, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H18N2O5S M = 398.42 Monoclinic, a = 13.8013 (7) Å b = 7.5180 (3) Å c = 36.2743 (15) Å β = 94.330 (3)° V = 3753.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.35 × 0.18 × 0.15 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.968, T max = 0.985 13274 measured reflections 3314 independent reflections 1776 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.130 S = 0.97 3314 reflections 269 parameters 10 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶)’; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016291/dn2678sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016291/dn2678Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016291/dn2678Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N2O5SF(000) = 1664
Mr = 398.42Dx = 1.410 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1789 reflections
a = 13.8013 (7) Åθ = 2.3–25.3°
b = 7.5180 (3) ŵ = 0.21 mm1
c = 36.2743 (15) ÅT = 296 K
β = 94.330 (3)°Needle, yellow
V = 3753.0 (3) Å30.35 × 0.18 × 0.15 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer3314 independent reflections
Radiation source: fine-focus sealed tube1776 reflections with I > 2σ(I)
graphiteRint = 0.077
Detector resolution: 8.10 pixels mm-1θmax = 25.0°, θmin = 2.3°
ω scansh = −16→16
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = 0→8
Tmin = 0.968, Tmax = 0.985l = 0→42
13274 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0533P)2] where P = (Fo2 + 2Fc2)/3
3314 reflections(Δ/σ)max = 0.001
269 parametersΔρmax = 0.20 e Å3
10 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.10364 (6)−0.08366 (11)−0.04024 (2)0.0529 (3)
O10.11162 (17)0.4807 (3)−0.00428 (6)0.0604 (7)
O20.3194 (2)0.3243 (3)0.21973 (6)0.0911 (9)
C16A0.3217 (7)0.1867 (9)0.24963 (15)0.1062 (19)0.75
H16A0.25630.14920.25400.127*0.75
H16B0.35850.08340.24280.127*0.75
C17A0.3688 (6)0.2726 (9)0.28278 (13)0.1062 (19)0.75
H17A0.43330.30860.27800.159*0.75
H17B0.37180.19010.30300.159*0.75
H17C0.33180.37510.28900.159*0.75
C16B0.2928 (14)0.259 (3)0.2569 (5)0.122 (7)0.25
H16C0.24410.16590.25560.147*0.25
H16D0.27620.35340.27360.147*0.25
C17B0.3965 (14)0.192 (3)0.2636 (8)0.122 (7)0.25
H17D0.41310.12210.24290.184*0.25
H17E0.40190.11980.28550.184*0.25
H17F0.44010.29120.26680.184*0.25
O30.2852 (2)0.0944 (4)0.18250 (6)0.0853 (9)
O40.40074 (19)0.5902 (3)0.18304 (7)0.0793 (8)
C19A0.4388 (7)0.7695 (14)0.1889 (4)0.105 (3)0.53
H19A0.43660.80600.21450.126*0.53
H19B0.40310.85480.17300.126*0.53
C20A0.5401 (7)0.7499 (13)0.1787 (3)0.105 (3)0.53
H20A0.57260.66110.19410.157*0.53
H20B0.57340.86140.18220.157*0.53
H20C0.53990.71460.15330.157*0.53
C19B0.4500 (8)0.7644 (17)0.1791 (5)0.108 (4)0.47
H19C0.40980.85990.18740.130*0.47
H19D0.46150.78540.15340.130*0.47
C20B0.5450 (7)0.7572 (16)0.2024 (3)0.108 (4)0.47
H20D0.53250.74510.22800.163*0.47
H20E0.58080.86470.19900.163*0.47
H20F0.58220.65710.19500.163*0.47
O50.2939 (2)0.6807 (4)0.13788 (7)0.0874 (9)
N10.0155 (2)0.0557 (4)−0.09743 (7)0.0591 (8)
N20.23819 (19)0.1593 (4)0.11064 (7)0.0544 (8)
H20.24320.07650.12700.065*
C10.1051 (2)0.3242 (5)−0.01327 (8)0.0440 (8)
C20.0601 (2)0.2734 (4)−0.05003 (8)0.0446 (8)
C30.0182 (2)0.4052 (5)−0.07279 (9)0.0618 (10)
H30.01950.5229−0.06490.074*
C4−0.0251 (3)0.3623 (6)−0.10695 (10)0.0737 (12)
H4−0.05420.4491−0.12230.088*
C5−0.0242 (3)0.1861 (6)−0.11782 (9)0.0719 (11)
H5−0.05330.1574−0.14100.086*
C60.0558 (2)0.1015 (4)−0.06379 (8)0.0460 (8)
C70.1410 (2)0.0021 (4)0.00313 (8)0.0407 (8)
C80.1395 (2)0.1820 (4)0.01247 (8)0.0390 (8)
C90.1711 (2)0.2333 (4)0.04837 (8)0.0452 (8)
H90.16910.35280.05490.054*
C100.2052 (2)0.1102 (5)0.07425 (8)0.0448 (8)
C110.2065 (2)−0.0693 (4)0.06457 (8)0.0507 (9)
H110.2294−0.15340.08190.061*
C120.1743 (2)−0.1219 (4)0.02973 (8)0.0468 (8)
H120.1746−0.24210.02370.056*
C130.2620 (2)0.3227 (5)0.12156 (8)0.0525 (9)
H130.25550.41060.10350.063*
C140.2949 (2)0.3776 (4)0.15601 (8)0.0503 (9)
C150.3008 (3)0.2515 (6)0.18640 (9)0.0634 (10)
C180.3268 (3)0.5646 (5)0.15800 (9)0.0608 (10)
U11U22U33U12U13U23
S10.0609 (6)0.0445 (6)0.0529 (5)0.0014 (5)0.0003 (4)−0.0085 (4)
O10.0728 (18)0.0357 (15)0.0714 (15)0.0011 (13)−0.0036 (12)−0.0025 (12)
O20.150 (3)0.077 (2)0.0444 (14)−0.0195 (18)−0.0106 (15)0.0048 (13)
C16A0.175 (6)0.088 (4)0.050 (2)0.010 (4)−0.023 (3)0.004 (2)
C17A0.175 (6)0.088 (4)0.050 (2)0.010 (4)−0.023 (3)0.004 (2)
C16B0.20 (2)0.056 (13)0.107 (13)−0.034 (13)0.004 (15)0.009 (9)
C17B0.20 (2)0.056 (13)0.107 (13)−0.034 (13)0.004 (15)0.009 (9)
O30.135 (3)0.0529 (19)0.0666 (16)−0.0019 (18)0.0001 (15)0.0044 (14)
O40.085 (2)0.0608 (19)0.0880 (18)−0.0109 (15)−0.0233 (15)−0.0001 (14)
C19A0.127 (9)0.055 (5)0.129 (7)−0.022 (5)−0.010 (6)0.006 (4)
C20A0.127 (9)0.055 (5)0.129 (7)−0.022 (5)−0.010 (6)0.006 (4)
C19B0.080 (8)0.102 (8)0.138 (8)−0.009 (5)−0.026 (5)−0.044 (6)
C20B0.080 (8)0.102 (8)0.138 (8)−0.009 (5)−0.026 (5)−0.044 (6)
O50.115 (2)0.063 (2)0.0792 (18)0.0021 (16)−0.0280 (16)0.0106 (15)
N10.058 (2)0.072 (2)0.0474 (17)−0.0035 (16)0.0008 (14)−0.0064 (15)
N20.065 (2)0.053 (2)0.0452 (16)−0.0068 (16)0.0044 (13)0.0012 (13)
C10.034 (2)0.044 (2)0.054 (2)−0.0031 (17)0.0088 (15)0.0006 (17)
C20.038 (2)0.046 (2)0.0496 (19)0.0001 (16)0.0032 (15)0.0073 (16)
C30.060 (2)0.059 (3)0.065 (2)0.003 (2)0.0019 (19)0.003 (2)
C40.075 (3)0.081 (3)0.063 (3)0.007 (2)−0.008 (2)0.016 (2)
C50.075 (3)0.091 (4)0.049 (2)−0.001 (3)−0.0056 (19)0.000 (2)
C60.039 (2)0.054 (2)0.0446 (18)−0.0004 (17)0.0057 (15)0.0009 (17)
C70.035 (2)0.039 (2)0.0479 (18)−0.0044 (16)0.0062 (15)0.0002 (15)
C80.0351 (19)0.037 (2)0.0452 (18)−0.0044 (15)0.0061 (14)−0.0006 (15)
C90.044 (2)0.042 (2)0.0507 (19)−0.0033 (16)0.0073 (16)−0.0075 (16)
C100.047 (2)0.050 (2)0.0386 (17)−0.0050 (17)0.0066 (14)0.0010 (16)
C110.053 (2)0.046 (2)0.053 (2)−0.0014 (18)0.0071 (17)0.0101 (17)
C120.051 (2)0.037 (2)0.052 (2)−0.0022 (16)0.0077 (16)−0.0007 (15)
C130.051 (2)0.060 (3)0.047 (2)−0.0038 (19)0.0060 (16)0.0018 (17)
C140.059 (2)0.049 (2)0.0430 (18)−0.0047 (18)0.0061 (16)0.0007 (16)
C150.072 (3)0.066 (3)0.051 (2)0.003 (2)−0.0017 (19)−0.005 (2)
C180.067 (3)0.064 (3)0.050 (2)0.001 (2)−0.0044 (19)−0.0032 (19)
S1—C61.737 (3)C20B—H20D0.9600
S1—C71.742 (3)C20B—H20E0.9600
O1—C11.222 (3)C20B—H20F0.9600
O2—C151.334 (4)O5—C181.204 (4)
O2—C16A1.497 (6)N1—C51.321 (4)
O2—C16B1.506 (14)N1—C61.347 (4)
C16A—C17A1.472 (7)N2—C131.324 (4)
C16A—H16A0.9700N2—C101.413 (4)
C16A—H16B0.9700N2—H20.8600
C17A—H17A0.9600C1—C81.474 (4)
C17A—H17B0.9600C1—C21.478 (4)
C17A—H17C0.9600C2—C61.385 (4)
C16B—C17B1.520 (10)C2—C31.388 (4)
C16B—H16C0.9700C3—C41.373 (4)
C16B—H16D0.9700C3—H30.9300
C17B—H17D0.9600C4—C51.382 (5)
C17B—H17E0.9600C4—H40.9300
C17B—H17F0.9600C5—H50.9300
O3—C151.206 (4)C7—C121.395 (4)
O4—C181.328 (4)C7—C81.395 (4)
O4—C19A1.457 (10)C8—C91.396 (4)
O4—C19B1.487 (12)C9—C101.375 (4)
C19A—C20A1.480 (9)C9—H90.9300
C19A—H19A0.9700C10—C111.395 (4)
C19A—H19B0.9700C11—C121.366 (4)
C20A—H20A0.9600C11—H110.9300
C20A—H20B0.9600C12—H120.9300
C20A—H20C0.9600C13—C141.361 (4)
C19B—C20B1.506 (10)C13—H130.9300
C19B—H19C0.9700C14—C151.452 (4)
C19B—H19D0.9700C14—C181.473 (4)
C6—S1—C7102.90 (15)C6—C2—C1124.7 (3)
C15—O2—C16A111.4 (4)C3—C2—C1118.7 (3)
C15—O2—C16B129.4 (11)C4—C3—C2120.2 (3)
C16A—O2—C16B28.4 (8)C4—C3—H3119.9
C17A—C16A—O2105.8 (5)C2—C3—H3119.9
C17A—C16A—H16A110.6C3—C4—C5118.0 (4)
O2—C16A—H16A110.6C3—C4—H4121.0
C17A—C16A—H16B110.6C5—C4—H4121.0
O2—C16A—H16B110.6N1—C5—C4124.3 (4)
H16A—C16A—H16B108.7N1—C5—H5117.9
O2—C16B—C17B87.8 (14)C4—C5—H5117.9
O2—C16B—H16C114.0N1—C6—C2124.6 (3)
C17B—C16B—H16C114.0N1—C6—S1110.9 (3)
O2—C16B—H16D114.0C2—C6—S1124.5 (2)
C17B—C16B—H16D114.0C12—C7—C8119.4 (3)
H16C—C16B—H16D111.2C12—C7—S1115.9 (2)
C16B—C17B—H17D109.5C8—C7—S1124.7 (2)
C16B—C17B—H17E109.5C7—C8—C9119.0 (3)
H17D—C17B—H17E109.5C7—C8—C1124.0 (3)
C16B—C17B—H17F109.5C9—C8—C1117.0 (3)
H17D—C17B—H17F109.5C10—C9—C8121.2 (3)
H17E—C17B—H17F109.5C10—C9—H9119.4
C18—O4—C19A118.9 (6)C8—C9—H9119.4
C18—O4—C19B113.3 (6)C9—C10—C11119.3 (3)
C19A—O4—C19B15.6 (11)C9—C10—N2122.1 (3)
O4—C19A—C20A102.0 (8)C11—C10—N2118.6 (3)
O4—C19A—H19A111.4C12—C11—C10120.2 (3)
C20A—C19A—H19A111.4C12—C11—H11119.9
O4—C19A—H19B111.4C10—C11—H11119.9
C20A—C19A—H19B111.4C11—C12—C7120.9 (3)
H19A—C19A—H19B109.2C11—C12—H12119.5
O4—C19B—C20B107.4 (10)C7—C12—H12119.5
O4—C19B—H19C110.2N2—C13—C14127.9 (3)
C20B—C19B—H19C110.2N2—C13—H13116.1
O4—C19B—H19D110.2C14—C13—H13116.1
C20B—C19B—H19D110.2C13—C14—C15119.7 (3)
H19C—C19B—H19D108.5C13—C14—C18114.3 (3)
C5—N1—C6116.3 (3)C15—C14—C18125.9 (3)
C13—N2—C10125.3 (3)O3—C15—O2121.9 (3)
C13—N2—H2117.4O3—C15—C14123.4 (3)
C10—N2—H2117.4O2—C15—C14114.6 (4)
O1—C1—C8121.0 (3)O5—C18—O4123.0 (4)
O1—C1—C2120.4 (3)O5—C18—C14124.4 (4)
C8—C1—C2118.5 (3)O4—C18—C14112.5 (3)
C6—C2—C3116.6 (3)
C15—O2—C16A—C17A164.6 (6)O1—C1—C8—C95.8 (4)
C16B—O2—C16A—C17A−60.2 (19)C2—C1—C8—C9−172.7 (2)
C15—O2—C16B—C17B101.0 (17)C7—C8—C9—C101.2 (4)
C16A—O2—C16B—C17B42.9 (14)C1—C8—C9—C10−179.5 (3)
C18—O4—C19A—C20A−118.4 (9)C8—C9—C10—C11−1.1 (4)
C19B—O4—C19A—C20A−46 (3)C8—C9—C10—N2179.5 (3)
C18—O4—C19B—C20B−166.4 (9)C13—N2—C10—C9−16.8 (5)
C19A—O4—C19B—C20B79 (3)C13—N2—C10—C11163.8 (3)
O1—C1—C2—C6174.9 (3)C9—C10—C11—C120.0 (4)
C8—C1—C2—C6−6.5 (4)N2—C10—C11—C12179.4 (3)
O1—C1—C2—C3−5.4 (4)C10—C11—C12—C71.0 (4)
C8—C1—C2—C3173.2 (3)C8—C7—C12—C11−0.9 (4)
C6—C2—C3—C40.4 (5)S1—C7—C12—C11179.2 (2)
C1—C2—C3—C4−179.3 (3)C10—N2—C13—C14−179.4 (3)
C2—C3—C4—C5−0.9 (5)N2—C13—C14—C15−4.2 (5)
C6—N1—C5—C40.9 (5)N2—C13—C14—C18172.5 (3)
C3—C4—C5—N10.2 (6)C16A—O2—C15—O32.2 (6)
C5—N1—C6—C2−1.5 (5)C16B—O2—C15—O3−23.5 (11)
C5—N1—C6—S1179.4 (2)C16A—O2—C15—C14178.4 (5)
C3—C2—C6—N10.9 (4)C16B—O2—C15—C14152.7 (10)
C1—C2—C6—N1−179.4 (3)C13—C14—C15—O36.0 (5)
C3—C2—C6—S1179.8 (2)C18—C14—C15—O3−170.3 (4)
C1—C2—C6—S1−0.5 (4)C13—C14—C15—O2−170.2 (3)
C7—S1—C6—N1−174.8 (2)C18—C14—C15—O213.5 (5)
C7—S1—C6—C26.2 (3)C19A—O4—C18—O55.6 (8)
C6—S1—C7—C12173.8 (2)C19B—O4—C18—O5−10.6 (8)
C6—S1—C7—C8−6.1 (3)C19A—O4—C18—C14−178.4 (6)
C12—C7—C8—C9−0.2 (4)C19B—O4—C18—C14165.4 (7)
S1—C7—C8—C9179.7 (2)C13—C14—C18—O529.7 (5)
C12—C7—C8—C1−179.4 (3)C15—C14—C18—O5−153.8 (4)
S1—C7—C8—C10.5 (4)C13—C14—C18—O4−146.2 (3)
O1—C1—C8—C7−175.0 (3)C15—C14—C18—O430.3 (5)
C2—C1—C8—C76.5 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O30.862.062.683 (3)129
C11—H11···O5i0.932.493.403 (4)167
C12—H12···O1i0.932.453.322 (4)157
C17A—H17C···O3ii0.962.583.516 (8)165
C19A—H19B···O3iii0.972.473.231 (11)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O30.862.062.683 (3)129
C11—H11⋯O5i0.932.493.403 (4)167
C12—H12⋯O1i0.932.453.322 (4)157
C17A—H17C⋯O3ii0.962.583.516 (8)165
C19A—H19B⋯O3iii0.972.473.231 (11)135

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  7-Nitro-5H-1-benzothio-pyrano[2,3-b]pyridin-5-one.

Authors:  Muhammad Naeem Khan; M Nawaz Tahir; Misbahul Ain Khan; Islam Ullah Khan; Muhammad Nadeem Arshad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-20

4.  5H-1-Benzothio-pyrano[2,3-b]pyridin-5-one.

Authors:  Muhammad Naeem Khan; M Nawaz Tahir; Misbahul Ain Khan; Islam Ullah Khan; Muhammad Nadeem Arshad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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